Wall clock time and date at job start Tue Mar 31 2020 15:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.08996 * 109.46857 * 305.93367 * 3 2 1 5 5 N 1.46495 * 109.46957 * 65.93292 * 3 2 1 6 6 C 1.34777 * 120.00192 * 274.99692 * 5 3 2 7 7 O 1.21276 * 120.00068 * 0.02562 * 6 5 3 8 8 C 1.50695 * 119.99888 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47160 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47319 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47488 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00157 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47367 * 89.99720 * 16 14 12 18 18 H 1.48500 * 109.46974 * 209.99569 * 16 14 12 19 19 H 1.48499 * 109.46823 * 329.99444 * 16 14 12 20 20 C 1.50697 * 109.46704 * 185.93322 * 3 2 1 21 21 O 1.21280 * 120.00023 * 263.11340 * 20 3 2 22 22 N 1.34785 * 119.99794 * 83.12057 * 20 3 2 23 23 C 1.47143 * 120.98013 * 4.73907 * 22 20 3 24 24 C 1.53721 * 108.15979 * 129.43693 * 23 22 20 25 25 O 1.42962 * 109.14870 * 52.53286 * 24 23 22 26 26 C 1.42960 * 114.16557 * 297.29219 * 25 24 23 27 27 C 1.47151 * 120.97772 * 185.02243 * 22 20 3 28 28 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47241 * 300.00229 * 1 2 3 30 30 H 1.09001 * 109.47380 * 59.99918 * 1 2 3 31 31 H 1.08998 * 109.46902 * 119.99495 * 2 1 3 32 32 H 1.08998 * 109.47241 * 239.99771 * 2 1 3 33 33 H 0.97006 * 119.99758 * 94.99943 * 5 3 2 34 34 H 1.09002 * 109.47566 * 299.99874 * 8 6 5 35 35 H 1.08995 * 109.47537 * 59.99867 * 8 6 5 36 36 H 1.08993 * 109.47311 * 300.00335 * 9 8 6 37 37 H 1.09011 * 109.46924 * 59.99973 * 9 8 6 38 38 H 1.09002 * 109.47697 * 300.00692 * 10 9 8 39 39 H 1.09005 * 109.47050 * 60.00656 * 10 9 8 40 40 H 1.09002 * 109.47301 * 300.00935 * 11 10 9 41 41 H 1.08997 * 109.46798 * 60.00531 * 11 10 9 42 42 H 0.96999 * 119.99764 * 180.02562 * 15 14 12 43 43 H 1.09005 * 109.68372 * 249.20782 * 23 22 20 44 44 H 1.08997 * 109.68773 * 9.76437 * 23 22 20 45 45 H 1.08999 * 109.65382 * 292.56615 * 24 23 22 46 46 H 1.09003 * 109.48166 * 172.39793 * 24 23 22 47 47 H 1.09001 * 109.51172 * 302.65538 * 26 25 24 48 48 H 1.08999 * 109.54865 * 182.53457 * 26 25 24 49 49 H 1.08998 * 109.68691 * 350.23273 * 27 22 20 50 50 H 1.09000 * 109.68091 * 110.75445 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5925 1.9861 -0.8321 5 7 1.6717 2.0907 1.2611 6 6 0.4563 2.6569 1.3980 7 8 -0.3326 2.6295 0.4774 8 6 0.0777 3.3241 2.6951 9 6 -1.3429 3.8815 2.5863 10 6 -1.7276 4.5584 3.9034 11 6 -3.1485 5.1153 3.7948 12 6 -3.5271 5.7825 5.0919 13 1 -2.8243 5.8072 5.9117 14 6 -4.7702 6.3622 5.2318 15 7 -5.1008 6.9440 6.3640 16 14 -5.9854 6.3200 3.8136 17 1 -6.8197 5.0956 3.9129 18 1 -6.8582 7.5199 3.8739 19 1 -5.2442 6.3110 2.5269 20 6 3.5398 1.4450 -0.1469 21 8 4.2451 1.5359 0.8355 22 7 4.0972 1.3463 -1.3700 23 6 3.2649 1.3392 -2.5834 24 6 3.8303 2.3845 -3.5584 25 8 5.2270 2.1440 -3.7457 26 6 6.0091 2.2812 -2.5569 27 6 5.5558 1.2363 -1.5310 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.3026 2.1123 1.9976 34 1 0.1215 2.5956 3.5048 35 1 0.7723 4.1384 2.9012 36 1 -1.3864 4.6101 1.7768 37 1 -2.0379 3.0674 2.3801 38 1 -1.6842 3.8295 4.7128 39 1 -1.0327 5.3724 4.1100 40 1 -3.1923 5.8440 2.9854 41 1 -3.8430 4.3010 3.5885 42 1 -5.9755 7.3515 6.4624 43 1 3.2941 0.3511 -3.0428 44 1 2.2372 1.5943 -2.3252 45 1 3.6847 3.3842 -3.1491 46 1 3.3154 2.3046 -4.5158 47 1 5.8714 3.2805 -2.1439 48 1 7.0619 2.1268 -2.7931 49 1 6.0458 1.4233 -0.5755 50 1 5.8117 0.2378 -1.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588941071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:09 Heat of formation + Delta-G solvation = -156.571085 kcal Electronic energy + Delta-G solvation = -28154.286896 eV Core-core repulsion = 24180.072825 eV Total energy + Delta-G solvation = -3974.214071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95133 -40.70707 -39.39908 -36.95307 -36.31266 -35.95688 -34.60665 -33.51619 -32.49635 -31.73000 -29.67578 -28.29563 -27.16340 -25.16676 -23.94298 -23.67457 -22.36076 -21.71324 -21.34817 -20.45800 -18.87696 -18.81991 -18.06449 -17.39614 -17.26185 -17.08444 -16.72360 -16.47114 -16.29790 -16.07320 -15.96131 -15.64836 -15.13624 -15.06278 -14.76625 -14.61101 -14.28392 -13.90803 -13.73945 -13.61520 -13.48159 -13.40074 -13.06470 -12.85757 -12.80430 -12.56833 -12.40682 -12.30852 -12.07824 -11.90943 -11.81920 -11.74300 -11.50300 -11.33055 -11.31047 -11.25492 -10.97118 -10.79800 -10.75402 -10.15161 -9.74863 -8.28979 -6.32333 1.23619 1.35687 1.37231 1.50159 1.50784 1.64862 2.22744 2.36727 2.80824 3.06280 3.13546 3.66054 3.71311 3.80862 3.87225 3.92354 4.03550 4.05118 4.13021 4.16509 4.20773 4.28099 4.44389 4.46863 4.60847 4.63936 4.64329 4.70751 4.76442 4.78030 4.79252 4.87290 4.87453 4.96547 5.07657 5.16270 5.18952 5.20371 5.27444 5.35766 5.42903 5.61468 5.66751 5.69515 6.04799 6.05858 6.30157 6.45220 6.75785 6.81065 7.19824 7.32382 8.87664 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.002007 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.023066 B =13948.001551 C =14003.301573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.127 3.873 4 H 0.113 0.887 5 N -0.714 5.714 6 C 0.521 3.479 7 O -0.560 6.560 8 C -0.134 4.134 9 C -0.093 4.093 10 C -0.096 4.096 11 C -0.016 4.016 12 C -0.531 4.531 13 H 0.034 0.966 14 C 0.001 3.999 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.250 1.250 20 C 0.518 3.482 21 O -0.565 6.565 22 N -0.610 5.610 23 C 0.064 3.936 24 C 0.043 3.957 25 O -0.392 6.392 26 C 0.050 3.950 27 C 0.075 3.925 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.266 0.734 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.131 0.869 47 H 0.049 0.951 48 H 0.128 0.872 49 H 0.092 0.908 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.818 -16.832 -23.800 37.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.130 0.870 5 N -0.369 5.369 6 C 0.309 3.691 7 O -0.438 6.438 8 C -0.174 4.174 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.053 4.053 12 C -0.569 4.569 13 H 0.053 0.947 14 C -0.196 4.196 15 N -0.592 5.592 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.173 1.173 20 C 0.306 3.694 21 O -0.444 6.444 22 N -0.344 5.344 23 C -0.058 4.058 24 C -0.034 4.034 25 O -0.311 6.311 26 C -0.028 4.028 27 C -0.047 4.047 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.252 0.748 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.070 0.930 46 H 0.149 0.851 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.111 0.889 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.598 -16.758 -24.042 37.626 hybrid contribution -0.580 0.478 0.749 1.061 sum 23.017 -16.279 -23.293 36.570 Atomic orbital electron populations 1.21742 0.94307 1.01465 1.02262 1.21820 0.97062 0.92913 1.03900 1.20977 0.90514 0.96910 0.89676 0.86984 1.45840 1.16896 1.57953 1.16214 1.20938 0.80768 0.77118 0.90244 1.90689 1.50819 1.59592 1.42730 1.21686 0.98574 1.02148 0.94977 1.21255 0.94992 0.99755 0.97122 1.21353 0.96277 0.99115 0.96604 1.19565 0.95333 0.95529 0.94882 1.21556 1.00169 1.35445 0.99743 0.94743 1.26043 1.00498 0.94451 0.98571 1.70072 1.22368 1.39377 1.27427 0.85652 0.78613 0.78023 0.80341 1.19155 1.20832 1.17344 1.20747 0.90471 0.75256 0.82912 1.90689 1.64191 1.51028 1.38447 1.48182 1.08193 1.72138 1.05871 1.22905 0.95785 1.02382 0.84744 1.23221 0.81819 0.97041 1.01293 1.87971 1.19004 1.91372 1.32719 1.23059 0.97237 0.97378 0.85088 1.22431 0.79594 1.01316 1.01387 0.91844 0.94125 0.92468 0.91282 0.88665 0.74844 0.87008 0.87252 0.92622 0.92430 0.92677 0.92791 0.96653 0.96691 0.92546 0.88030 0.87538 0.92991 0.85136 0.93231 0.85433 0.88932 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.53 71.98 0.61 -1.90 16 2 C -0.12 -1.69 5.59 30.60 0.17 -1.52 16 3 C 0.13 2.11 1.90 44.25 0.08 2.20 16 4 H 0.11 1.84 5.57 -2.39 -0.01 1.83 16 5 N -0.71 -13.81 5.01 -446.12 -2.23 -16.04 16 6 C 0.52 12.41 6.44 87.66 0.56 12.98 16 7 O -0.56 -16.44 13.12 -3.02 -0.04 -16.48 16 8 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 9 C -0.09 -2.93 4.50 30.59 0.14 -2.80 16 10 C -0.10 -3.69 5.15 30.59 0.16 -3.54 16 11 C -0.02 -0.76 4.04 29.85 0.12 -0.64 16 12 C -0.53 -31.47 9.66 25.60 0.25 -31.23 16 13 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 14 C 0.00 0.05 5.47 84.65 0.46 0.51 16 15 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 16 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 20 C 0.52 9.03 6.93 87.65 0.61 9.64 16 21 O -0.56 -13.34 15.44 -3.03 -0.05 -13.38 16 22 N -0.61 -7.69 3.01 -816.54 -2.46 -10.15 16 23 C 0.06 0.49 6.37 86.50 0.55 1.04 16 24 C 0.04 0.36 7.00 72.22 0.51 0.86 16 25 O -0.39 -4.62 10.74 -148.98 -1.60 -6.22 16 26 C 0.05 0.47 6.98 72.08 0.50 0.97 16 27 C 0.07 0.81 6.65 86.35 0.57 1.38 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.93 5.62 -2.39 -0.01 0.92 16 30 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.93 7.97 -2.39 -0.02 0.91 16 33 H 0.41 7.46 7.76 -92.70 -0.72 6.74 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.06 1.89 8.10 -2.38 -0.02 1.87 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.02 0.73 7.20 -2.39 -0.02 0.72 16 41 H 0.01 0.70 7.57 -2.39 -0.02 0.69 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.11 0.71 5.50 -2.39 -0.01 0.70 16 45 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.09 1.24 7.06 -2.39 -0.02 1.22 16 50 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.88 392.79 1.42 -75.46 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.15 Total: 14.75 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 5.47 Total: -14.99 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -4.40 Total: -86.81 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.69 Total: -36.09 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -76.88 1.42 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588941071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.113 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds