Wall clock time and date at job start Tue Mar 31 2020 15:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 H 1.08995 * 109.47310 * 305.00075 * 3 2 1 5 5 N 1.46507 * 109.46906 * 64.99958 * 3 2 1 6 6 C 1.34782 * 119.99662 * 274.99999 * 5 3 2 7 7 O 1.21590 * 119.99977 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99817 * 180.02562 * 6 5 3 9 9 C 1.47021 * 125.64937 * 359.94913 * 8 6 5 10 10 C 1.54370 * 107.28813 * 181.13182 * 9 8 6 11 11 C 1.55147 * 102.92092 * 22.14333 * 10 9 8 12 12 O 1.42905 * 111.00578 * 82.63751 * 11 10 9 13 13 C 1.50702 * 111.00308 * 206.45025 * 11 10 9 14 14 H 1.08002 * 120.00299 * 356.82421 * 13 11 10 15 15 C 1.37884 * 119.99942 * 176.53980 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47423 * 125.64837 * 179.97438 * 8 6 5 22 22 C 1.52998 * 109.47343 * 184.99536 * 3 2 1 23 23 C 1.53177 * 109.54443 * 299.82838 * 22 3 2 24 24 C 1.53103 * 109.15898 * 183.23754 * 23 22 3 25 25 O 1.42907 * 109.48311 * 57.47305 * 24 23 22 26 26 C 1.42905 * 114.09792 * 298.88647 * 25 24 23 27 27 C 1.53094 * 109.41557 * 61.16193 * 26 25 24 28 28 H 1.08995 * 109.47424 * 300.00138 * 1 2 3 29 29 H 1.09005 * 109.46768 * 60.00343 * 1 2 3 30 30 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47087 * 239.99680 * 2 1 3 32 32 H 1.09003 * 109.46609 * 120.00167 * 2 1 3 33 33 H 0.96995 * 120.00225 * 95.00566 * 5 3 2 34 34 H 1.09001 * 109.88518 * 300.52094 * 9 8 6 35 35 H 1.09002 * 109.88165 * 61.68403 * 9 8 6 36 36 H 1.09001 * 110.70699 * 263.79361 * 10 9 8 37 37 H 1.09008 * 110.75075 * 140.51110 * 10 9 8 38 38 H 0.96701 * 113.99475 * 183.17547 * 12 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.08996 * 110.36708 * 36.99367 * 21 8 6 41 41 H 1.09002 * 110.46021 * 274.71461 * 21 8 6 42 42 H 1.09008 * 109.54031 * 59.99926 * 22 3 2 43 43 H 1.09009 * 109.52127 * 303.05311 * 23 22 3 44 44 H 1.08997 * 109.52629 * 63.24119 * 23 22 3 45 45 H 1.08998 * 109.40800 * 297.49545 * 24 23 22 46 46 H 1.08998 * 109.49598 * 177.50375 * 24 23 22 47 47 H 1.09001 * 109.48371 * 301.17888 * 26 25 24 48 48 H 1.08999 * 109.49232 * 181.15195 * 26 25 24 49 49 H 1.08994 * 109.52344 * 182.48768 * 27 26 25 50 50 H 1.08997 * 109.57294 * 62.32579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6643 1.3669 7 8 -0.3412 2.6325 0.4317 8 7 0.0787 3.2673 2.5184 9 6 0.9153 3.3781 3.7223 10 6 0.0844 4.1192 4.7916 11 6 -1.3751 3.8861 4.3200 12 8 -1.8563 2.6123 4.7537 13 6 -2.2800 4.9930 4.7965 14 1 -1.8883 5.7766 5.4281 15 6 -3.6068 5.0084 4.4214 16 7 -4.0838 4.0542 3.6523 17 14 -4.7266 6.3846 5.0058 18 1 -3.9522 7.3270 5.8528 19 1 -5.2734 7.1103 3.8312 20 1 -5.8444 5.8109 5.7974 21 6 -1.2149 3.9245 2.7795 22 6 3.5649 1.4443 -0.1256 23 6 4.1775 0.6909 1.0590 24 6 5.7040 0.7674 0.9679 25 8 6.1121 2.1368 0.9453 26 6 5.6078 2.8775 -0.1679 27 6 4.0776 2.8877 -0.1213 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1232 1.9978 34 1 1.1800 2.3840 4.0826 35 1 1.8182 3.9450 3.4953 36 1 0.3231 5.1828 4.7963 37 1 0.2457 3.6824 5.7772 38 1 -2.7470 2.4014 4.4417 39 1 -5.0173 4.0649 3.3887 40 1 -2.0239 3.3735 2.3001 41 1 -1.1969 4.9553 2.4253 42 1 3.8546 0.9572 -1.0567 43 1 3.8462 1.1475 1.9918 44 1 3.8614 -0.3518 1.0304 45 1 6.0375 0.2736 0.0553 46 1 6.1453 0.2709 1.8321 47 1 5.9401 2.4113 -1.0955 48 1 5.9797 3.9011 -0.1222 49 1 3.6901 3.4145 -0.9933 50 1 3.7433 3.3903 0.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:48 Heat of formation + Delta-G solvation = -135.570306 kcal Electronic energy + Delta-G solvation = -30103.421186 eV Core-core repulsion = 26130.117777 eV Total energy + Delta-G solvation = -3973.303409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40012 -39.24699 -37.64028 -36.11543 -34.21499 -32.73936 -32.17352 -32.02870 -31.31061 -29.84213 -27.84034 -27.11433 -24.94163 -24.02866 -23.36515 -22.66103 -21.04374 -20.12774 -19.57623 -19.22965 -17.57596 -17.03897 -16.53263 -16.24762 -15.81635 -15.43538 -15.08802 -14.93373 -14.57371 -14.43137 -14.12772 -14.06673 -13.77053 -13.48631 -13.00545 -12.80601 -12.77375 -12.67951 -12.14463 -12.01676 -11.64291 -11.61029 -11.57215 -11.41530 -11.37496 -11.09927 -11.02029 -10.83911 -10.76399 -10.57975 -10.45448 -10.44215 -10.40910 -10.15841 -9.71559 -9.50998 -9.34227 -8.68377 -8.65750 -8.33100 -7.63605 -6.26709 -4.36063 3.17297 3.22739 3.29736 3.33030 3.64182 3.80891 4.26905 4.36578 4.45712 4.52681 4.57581 4.75082 4.94037 5.00671 5.06939 5.19939 5.24410 5.29445 5.35347 5.43516 5.44000 5.46569 5.60520 5.67599 5.69796 5.74624 5.79636 5.85118 5.93272 6.04627 6.07055 6.10858 6.15697 6.19419 6.39743 6.53465 6.73414 6.76571 6.90017 6.90776 6.95092 7.01594 7.26552 7.35652 7.70073 7.76403 8.04609 8.59422 8.69108 9.21341 9.33012 9.43570 10.80400 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.003193 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.993464 B = 8767.468092 C = 9350.854651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.171 3.829 4 H 0.087 0.913 5 N -0.744 5.744 6 C 0.717 3.283 7 O -0.592 6.592 8 N -0.629 5.629 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.892 5.892 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.115 3.885 22 C -0.096 4.096 23 C -0.154 4.154 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.062 3.938 27 C -0.151 4.151 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.390 0.610 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.383 0.617 39 H 0.270 0.730 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.564 -6.406 -6.854 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.065 3.935 4 H 0.105 0.895 5 N -0.402 5.402 6 C 0.419 3.581 7 O -0.471 6.471 8 N -0.365 5.365 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.531 5.531 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.007 4.007 22 C -0.115 4.115 23 C -0.191 4.191 24 C -0.015 4.015 25 O -0.302 6.302 26 C -0.015 4.015 27 C -0.189 4.189 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.111 0.889 49 H 0.093 0.907 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.531 -6.449 -7.281 20.048 hybrid contribution -1.142 0.609 0.103 1.298 sum 16.389 -5.839 -7.178 18.821 Atomic orbital electron populations 1.21777 0.94443 1.00025 1.03826 1.21997 0.97553 0.96183 1.01398 1.20761 0.92241 0.93060 0.87429 0.89476 1.45253 1.16293 1.61941 1.16672 1.15487 0.81849 0.78257 0.82519 1.90888 1.52009 1.65679 1.38536 1.47918 1.19056 1.58296 1.11262 1.21905 0.93701 0.99455 0.86675 1.22596 0.96064 0.99532 0.97201 1.19624 0.89114 0.83103 0.87393 1.86081 1.37650 1.37583 1.77933 1.21520 0.94409 1.09587 1.32064 0.91513 1.25081 0.98210 0.96152 0.93793 1.69672 1.15633 1.32806 1.35012 0.86359 0.80332 0.81659 0.78601 1.19599 1.20786 1.20772 1.23091 0.82088 0.95615 0.99942 1.21515 0.94611 0.96219 0.99149 1.22310 0.96115 1.01569 0.99149 1.22578 0.94014 0.83149 1.01802 1.87944 1.72853 1.22236 1.47214 1.22586 0.93269 0.96691 0.88970 1.22235 0.96020 0.96800 1.03823 0.91656 0.92357 0.94209 0.91871 0.92039 0.77450 0.92845 0.93320 0.90509 0.90848 0.76618 0.92041 0.89949 0.92677 0.89850 0.91004 0.90207 0.93307 0.88917 0.93345 0.88936 0.90673 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.51 37.16 0.32 -1.89 16 2 C -0.13 -1.58 5.11 -26.73 -0.14 -1.71 16 3 C 0.17 2.09 2.01 -67.93 -0.14 1.96 16 4 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 5 N -0.74 -10.79 4.17 -58.67 -0.24 -11.03 16 6 C 0.72 14.02 7.06 -86.92 -0.61 13.41 16 7 O -0.59 -13.54 13.73 5.29 0.07 -13.47 16 8 N -0.63 -12.85 3.33 -176.19 -0.59 -13.44 16 9 C 0.11 1.86 6.15 -3.04 -0.02 1.84 16 10 C -0.12 -2.29 6.13 -24.88 -0.15 -2.44 16 11 C 0.25 5.99 0.88 -89.61 -0.08 5.91 16 12 O -0.58 -14.90 13.17 -35.23 -0.46 -15.36 16 13 C -0.54 -13.95 8.26 -34.44 -0.28 -14.23 16 14 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 15 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 16 N -0.89 -23.83 10.69 55.43 0.59 -23.24 16 17 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.11 2.76 5.50 -2.52 -0.01 2.74 16 22 C -0.10 -0.87 2.13 -90.44 -0.19 -1.07 16 23 C -0.15 -1.29 4.85 -26.59 -0.13 -1.42 16 24 C 0.06 0.49 6.84 37.21 0.25 0.74 16 25 O -0.38 -3.92 10.77 -35.23 -0.38 -4.30 16 26 C 0.06 0.52 6.84 37.21 0.25 0.78 16 27 C -0.15 -1.42 5.31 -26.59 -0.14 -1.56 16 28 H 0.06 1.24 5.64 -51.93 -0.29 0.95 16 29 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.69 6.79 -51.93 -0.35 0.34 16 33 H 0.39 5.07 5.59 -40.82 -0.23 4.84 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 37 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 38 H 0.38 10.14 7.26 45.56 0.33 10.47 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.08 2.24 7.47 -51.93 -0.39 1.86 16 41 H 0.05 1.38 8.03 -51.93 -0.42 0.96 16 42 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.07 0.67 6.41 -51.92 -0.33 0.34 16 44 H 0.08 0.60 6.74 -51.93 -0.35 0.25 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.84 7.36 -51.93 -0.38 0.46 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -29.57 377.98 -9.32 -38.89 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -7.82 Total: 16.12 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.17 Total: 4.80 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.24 Total: -47.71 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.77 Total: -33.13 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.57 -9.32 -38.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.681 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds