Wall clock time and date at job start Tue Mar 31 2020 15:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 H 1.08995 * 109.47310 * 305.00075 * 3 2 1 5 5 N 1.46507 * 109.46906 * 64.99958 * 3 2 1 6 6 C 1.34782 * 119.99662 * 274.99999 * 5 3 2 7 7 O 1.21590 * 119.99977 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99817 * 180.02562 * 6 5 3 9 9 C 1.47021 * 125.64937 * 359.94913 * 8 6 5 10 10 C 1.54370 * 107.28813 * 181.13182 * 9 8 6 11 11 C 1.55147 * 102.92092 * 22.14333 * 10 9 8 12 12 O 1.42905 * 111.00578 * 82.63751 * 11 10 9 13 13 C 1.50702 * 111.00308 * 206.45025 * 11 10 9 14 14 H 1.08002 * 120.00299 * 356.82421 * 13 11 10 15 15 C 1.37884 * 119.99942 * 176.53980 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47423 * 125.64837 * 179.97438 * 8 6 5 22 22 C 1.52998 * 109.47343 * 184.99536 * 3 2 1 23 23 C 1.53177 * 109.54443 * 299.82838 * 22 3 2 24 24 C 1.53103 * 109.15898 * 183.23754 * 23 22 3 25 25 O 1.42907 * 109.48311 * 57.47305 * 24 23 22 26 26 C 1.42905 * 114.09792 * 298.88647 * 25 24 23 27 27 C 1.53094 * 109.41557 * 61.16193 * 26 25 24 28 28 H 1.08995 * 109.47424 * 300.00138 * 1 2 3 29 29 H 1.09005 * 109.46768 * 60.00343 * 1 2 3 30 30 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47087 * 239.99680 * 2 1 3 32 32 H 1.09003 * 109.46609 * 120.00167 * 2 1 3 33 33 H 0.96995 * 120.00225 * 95.00566 * 5 3 2 34 34 H 1.09001 * 109.88518 * 300.52094 * 9 8 6 35 35 H 1.09002 * 109.88165 * 61.68403 * 9 8 6 36 36 H 1.09001 * 110.70699 * 263.79361 * 10 9 8 37 37 H 1.09008 * 110.75075 * 140.51110 * 10 9 8 38 38 H 0.96701 * 113.99475 * 183.17547 * 12 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.08996 * 110.36708 * 36.99367 * 21 8 6 41 41 H 1.09002 * 110.46021 * 274.71461 * 21 8 6 42 42 H 1.09008 * 109.54031 * 59.99926 * 22 3 2 43 43 H 1.09009 * 109.52127 * 303.05311 * 23 22 3 44 44 H 1.08997 * 109.52629 * 63.24119 * 23 22 3 45 45 H 1.08998 * 109.40800 * 297.49545 * 24 23 22 46 46 H 1.08998 * 109.49598 * 177.50375 * 24 23 22 47 47 H 1.09001 * 109.48371 * 301.17888 * 26 25 24 48 48 H 1.08999 * 109.49232 * 181.15195 * 26 25 24 49 49 H 1.08994 * 109.52344 * 182.48768 * 27 26 25 50 50 H 1.08997 * 109.57294 * 62.32579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6643 1.3669 7 8 -0.3412 2.6325 0.4317 8 7 0.0787 3.2673 2.5184 9 6 0.9153 3.3781 3.7223 10 6 0.0844 4.1192 4.7916 11 6 -1.3751 3.8861 4.3200 12 8 -1.8563 2.6123 4.7537 13 6 -2.2800 4.9930 4.7965 14 1 -1.8883 5.7766 5.4281 15 6 -3.6068 5.0084 4.4214 16 7 -4.0838 4.0542 3.6523 17 14 -4.7266 6.3846 5.0058 18 1 -3.9522 7.3270 5.8528 19 1 -5.2734 7.1103 3.8312 20 1 -5.8444 5.8109 5.7974 21 6 -1.2149 3.9245 2.7795 22 6 3.5649 1.4443 -0.1256 23 6 4.1775 0.6909 1.0590 24 6 5.7040 0.7674 0.9679 25 8 6.1121 2.1368 0.9453 26 6 5.6078 2.8775 -0.1679 27 6 4.0776 2.8877 -0.1213 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1232 1.9978 34 1 1.1800 2.3840 4.0826 35 1 1.8182 3.9450 3.4953 36 1 0.3231 5.1828 4.7963 37 1 0.2457 3.6824 5.7772 38 1 -2.7470 2.4014 4.4417 39 1 -5.0173 4.0649 3.3887 40 1 -2.0239 3.3735 2.3001 41 1 -1.1969 4.9553 2.4253 42 1 3.8546 0.9572 -1.0567 43 1 3.8462 1.1475 1.9918 44 1 3.8614 -0.3518 1.0304 45 1 6.0375 0.2736 0.0553 46 1 6.1453 0.2709 1.8321 47 1 5.9401 2.4113 -1.0955 48 1 5.9797 3.9011 -0.1222 49 1 3.6901 3.4145 -0.9933 50 1 3.7433 3.3903 0.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:47 Heat of formation + Delta-G solvation = -156.572949 kcal Electronic energy + Delta-G solvation = -30104.331929 eV Core-core repulsion = 26130.117777 eV Total energy + Delta-G solvation = -3974.214152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60406 -40.36700 -39.15582 -37.32979 -36.02278 -34.19294 -33.71996 -33.30525 -31.97685 -31.45921 -29.56577 -28.23904 -26.76523 -24.76759 -24.32741 -24.10477 -22.00449 -21.47887 -21.26771 -20.32890 -19.26342 -18.80765 -17.54956 -17.05317 -17.00272 -16.81693 -16.76131 -16.24742 -15.84944 -15.61446 -15.34898 -15.20627 -14.81863 -14.69990 -14.65043 -14.37564 -14.13105 -13.69940 -13.53272 -13.49695 -13.25967 -12.96844 -12.87032 -12.61863 -12.50181 -12.35711 -12.31820 -12.20036 -12.18420 -12.10269 -12.00686 -11.82385 -11.34863 -11.24535 -11.10528 -11.07338 -10.66005 -10.42843 -10.30773 -9.97249 -9.28131 -8.25064 -6.42056 1.40431 1.43777 1.54721 1.76383 2.26428 2.38202 3.01147 3.03579 3.14764 3.54843 3.72638 3.80121 3.84300 4.09915 4.10214 4.18649 4.24299 4.24615 4.32700 4.36324 4.37026 4.48479 4.60907 4.65452 4.75435 4.76976 4.79750 4.84607 4.85381 4.89283 5.02966 5.03903 5.06314 5.10026 5.14742 5.17998 5.28176 5.32909 5.37194 5.42152 5.46793 5.49310 5.70759 5.76535 6.05030 6.23877 6.34233 6.65449 7.13887 7.29482 7.36520 7.68665 8.80421 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.003193 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.993464 B = 8767.468092 C = 9350.854651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.168 3.832 4 H 0.063 0.937 5 N -0.723 5.723 6 C 0.712 3.288 7 O -0.632 6.632 8 N -0.636 5.636 9 C 0.110 3.890 10 C -0.111 4.111 11 C 0.232 3.768 12 O -0.588 6.588 13 C -0.556 4.556 14 H 0.069 0.931 15 C 0.025 3.975 16 N -0.916 5.916 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.132 3.868 22 C -0.085 4.085 23 C -0.151 4.151 24 C 0.059 3.941 25 O -0.405 6.405 26 C 0.063 3.937 27 C -0.150 4.150 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.374 0.626 39 H 0.269 0.731 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.345 -7.023 -6.676 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.063 3.937 4 H 0.082 0.918 5 N -0.380 5.380 6 C 0.414 3.586 7 O -0.514 6.514 8 N -0.373 5.373 9 C -0.013 4.013 10 C -0.148 4.148 11 C 0.192 3.808 12 O -0.396 6.396 13 C -0.594 4.594 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.205 1.205 21 C 0.008 3.992 22 C -0.104 4.104 23 C -0.189 4.189 24 C -0.017 4.017 25 O -0.324 6.324 26 C -0.013 4.013 27 C -0.188 4.188 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.091 0.909 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.386 -7.083 -7.084 22.714 hybrid contribution -2.008 0.772 0.006 2.152 sum 18.378 -6.311 -7.078 20.680 Atomic orbital electron populations 1.21697 0.97368 0.99883 1.00738 1.21977 0.94647 0.96161 1.03582 1.20946 0.94597 0.92767 0.85353 0.91830 1.45117 1.14375 1.60563 1.17933 1.15688 0.82909 0.78279 0.81699 1.90858 1.53611 1.67066 1.39898 1.47860 1.18284 1.58527 1.12627 1.22041 0.93815 1.00650 0.84752 1.22596 0.93122 1.00756 0.98367 1.19858 0.91443 0.82082 0.87422 1.86070 1.37035 1.38508 1.77995 1.21852 0.95149 1.10226 1.32173 0.91288 1.25839 0.99651 0.98183 0.93867 1.69795 1.15754 1.34219 1.35791 0.85403 0.78478 0.79095 0.78020 1.18703 1.20912 1.20548 1.22572 0.82810 0.94038 0.99780 1.21471 0.91623 0.96510 1.00807 1.22306 0.96577 1.02024 0.97951 1.22712 0.93460 0.82372 1.03167 1.87923 1.73164 1.23407 1.47930 1.22626 0.92178 0.97173 0.89345 1.22213 0.97026 0.96801 1.02792 0.95782 0.94397 0.92803 0.88716 0.90621 0.76135 0.91331 0.89792 0.89396 0.89761 0.77672 0.92174 0.94237 0.94550 0.87515 0.92131 0.88801 0.91677 0.87922 0.91656 0.88548 0.90881 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.51 71.98 0.61 -3.72 16 2 C -0.13 -2.72 5.11 30.59 0.16 -2.56 16 3 C 0.17 3.90 2.01 44.99 0.09 3.99 16 4 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 5 N -0.72 -20.41 4.17 -457.81 -1.91 -22.32 16 6 C 0.71 28.46 7.06 179.05 1.26 29.72 16 7 O -0.63 -30.41 13.73 -4.00 -0.05 -30.47 16 8 N -0.64 -26.37 3.33 -829.62 -2.76 -29.13 16 9 C 0.11 3.65 6.15 86.75 0.53 4.19 16 10 C -0.11 -4.24 6.13 31.80 0.19 -4.04 16 11 C 0.23 11.39 0.88 -10.14 -0.01 11.38 16 12 O -0.59 -30.77 13.17 -148.98 -1.96 -32.73 16 13 C -0.56 -29.21 8.26 25.60 0.21 -29.00 16 14 H 0.07 3.51 7.78 -2.91 -0.02 3.48 16 15 C 0.03 1.34 5.29 84.66 0.45 1.79 16 16 N -0.92 -50.74 10.69 21.45 0.23 -50.51 16 17 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.13 6.62 5.50 86.86 0.48 7.10 16 22 C -0.09 -1.31 2.13 -10.68 -0.02 -1.33 16 23 C -0.15 -2.01 4.85 30.69 0.15 -1.86 16 24 C 0.06 0.73 6.84 72.02 0.49 1.23 16 25 O -0.40 -7.13 10.77 -148.98 -1.60 -8.74 16 26 C 0.06 0.91 6.84 72.01 0.49 1.40 16 27 C -0.15 -2.54 5.31 30.68 0.16 -2.38 16 28 H 0.02 0.93 5.64 -2.39 -0.01 0.91 16 29 H 0.04 1.29 7.84 -2.38 -0.02 1.27 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.47 6.79 -2.39 -0.02 1.45 16 33 H 0.40 9.69 5.59 -92.71 -0.52 9.17 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 37 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.37 20.72 7.26 -74.06 -0.54 20.18 16 39 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.04 2.29 7.47 -2.39 -0.02 2.27 16 41 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 42 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 0.96 6.41 -2.38 -0.02 0.94 16 44 H 0.09 1.02 6.74 -2.39 -0.02 1.00 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.18 7.36 -2.39 -0.02 1.16 16 Total: -1.00 -67.73 377.98 -0.89 -68.63 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.11 Total: 45.14 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.25 Total: 15.90 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -4.44 Total: -101.97 kcal Atomic # 8 Polarization: -68.32 SS G_CDS: -3.62 Total: -71.94 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -67.73 -0.89 -68.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.945 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds