Wall clock time and date at job start Tue Mar 31 2020 15:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 H 1.08998 * 109.70869 * 61.96600 * 3 2 1 5 5 C 1.52882 * 109.61550 * 301.66666 * 3 2 1 6 6 O 1.42962 * 109.29538 * 188.11758 * 5 3 2 7 7 C 1.42954 * 114.17107 * 62.44697 * 6 5 3 8 8 C 1.53000 * 109.51772 * 177.49361 * 7 6 5 9 9 C 1.53007 * 109.55343 * 57.36675 * 7 6 5 10 10 C 1.53295 * 109.22543 * 297.42390 * 7 6 5 11 11 N 1.47149 * 109.67931 * 182.50755 * 3 2 1 12 12 C 1.34769 * 120.98425 * 350.27664 * 11 3 2 13 13 O 1.21354 * 120.00257 * 357.09622 * 12 11 3 14 14 C 1.49455 * 120.00064 * 177.09338 * 12 11 3 15 15 O 1.21344 * 120.00060 * 6.25070 * 14 12 11 16 16 N 1.34780 * 119.99937 * 186.24520 * 14 12 11 17 17 C 1.46495 * 119.99820 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47279 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47532 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47266 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99905 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00078 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99787 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47079 * 90.00190 * 24 22 20 26 26 H 1.48503 * 109.47401 * 209.99963 * 24 22 20 27 27 H 1.48493 * 109.47549 * 330.00208 * 24 22 20 28 28 H 1.08995 * 109.47207 * 175.22345 * 1 2 3 29 29 H 1.09005 * 109.47103 * 295.21799 * 1 2 3 30 30 H 1.08996 * 109.47515 * 55.21615 * 1 2 3 31 31 H 1.08995 * 109.47249 * 240.00016 * 2 1 3 32 32 H 1.08999 * 109.46987 * 119.99756 * 2 1 3 33 33 H 1.08999 * 109.58358 * 68.10363 * 5 3 2 34 34 H 1.09003 * 109.40952 * 308.02148 * 5 3 2 35 35 H 1.08999 * 109.47351 * 179.74459 * 8 7 6 36 36 H 1.09002 * 109.46859 * 299.75130 * 8 7 6 37 37 H 1.09005 * 109.46744 * 59.75094 * 8 7 6 38 38 H 1.09003 * 109.47180 * 300.23145 * 9 7 6 39 39 H 1.09000 * 109.46692 * 60.22891 * 9 7 6 40 40 H 1.08991 * 109.47119 * 180.22799 * 9 7 6 41 41 H 1.09001 * 109.68002 * 292.57516 * 10 7 6 42 42 H 1.08996 * 109.68731 * 172.02670 * 10 7 6 43 43 H 0.96996 * 119.99764 * 0.02562 * 16 14 12 44 44 H 1.09002 * 109.47413 * 300.00556 * 17 16 14 45 45 H 1.09002 * 109.47158 * 60.00533 * 17 16 14 46 46 H 1.08997 * 109.46991 * 300.00021 * 18 17 16 47 47 H 1.09002 * 109.46794 * 60.00060 * 18 17 16 48 48 H 1.09002 * 109.47250 * 300.00362 * 19 18 17 49 49 H 1.09001 * 109.46690 * 59.99798 * 19 18 17 50 50 H 0.97000 * 119.99718 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7078 1.9499 0.9057 5 6 1.4983 2.1784 -1.2257 6 8 2.1251 3.4596 -1.3228 7 6 3.5411 3.4056 -1.5120 8 6 4.0910 4.8253 -1.6638 9 6 3.8589 2.5971 -2.7715 10 6 4.1876 2.7334 -0.2955 11 7 3.5102 1.4484 -0.0606 12 6 4.2153 0.3096 0.0890 13 8 3.6414 -0.7323 0.3293 14 6 5.7040 0.3299 -0.0411 15 8 6.2876 1.3861 -0.1682 16 7 6.3983 -0.8251 -0.0172 17 6 7.8575 -0.8052 -0.1453 18 6 8.3941 -2.2369 -0.0882 19 6 9.9181 -2.2162 -0.2213 20 6 10.4466 -3.6264 -0.1644 21 1 9.7637 -4.4545 -0.0456 22 6 11.8019 -3.8592 -0.2640 23 7 12.2630 -5.0899 -0.2148 24 14 12.9829 -2.4267 -0.4702 25 1 13.4156 -1.9456 0.8664 26 1 14.1698 -2.8711 -1.2443 27 1 12.3025 -1.3247 -1.1965 28 1 -0.3633 -1.0240 -0.0856 29 1 -0.3633 0.4379 0.9298 30 1 -0.3634 0.5862 -0.8440 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4203 2.3070 -1.1278 34 1 1.7158 1.5978 -2.1222 35 1 5.1711 4.7836 -1.8035 36 1 3.6308 5.3026 -2.5290 37 1 3.8626 5.4012 -0.7669 38 1 3.4653 1.5864 -2.6634 39 1 3.3989 3.0756 -3.6361 40 1 4.9388 2.5534 -2.9123 41 1 4.0755 3.3729 0.5801 42 1 5.2459 2.5603 -0.4909 43 1 5.9318 -1.6694 0.0841 44 1 8.1326 -0.3523 -1.0979 45 1 8.2861 -0.2235 0.6708 46 1 8.1191 -2.6902 0.8641 47 1 7.9655 -2.8184 -0.9046 48 1 10.1936 -1.7627 -1.1735 49 1 10.3462 -1.6349 0.5953 50 1 13.2165 -5.2536 -0.2853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593928398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:08 Heat of formation + Delta-G solvation = -97.592898 kcal Electronic energy + Delta-G solvation = -29100.474253 eV Core-core repulsion = 25128.817668 eV Total energy + Delta-G solvation = -3971.656585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58349 -39.76190 -38.63878 -36.13369 -35.62989 -34.61543 -33.37750 -32.64972 -31.54468 -28.62227 -27.90687 -27.50054 -26.76194 -25.50238 -23.73328 -22.40394 -21.67026 -20.80233 -20.22437 -19.61743 -17.91272 -17.21032 -16.80208 -16.72426 -16.38197 -16.02871 -15.45408 -15.37320 -15.16378 -15.02815 -14.42854 -14.28382 -14.16052 -13.87583 -13.59259 -13.37930 -13.27371 -12.81475 -12.76544 -12.54986 -12.35911 -12.24577 -12.16798 -12.05931 -11.97623 -11.74415 -11.62446 -11.17750 -11.06080 -10.96085 -10.88703 -10.51140 -10.38845 -10.16063 -9.97070 -9.78921 -9.28234 -9.20934 -8.96996 -8.81411 -8.59456 -6.09717 -4.08982 1.25446 2.07995 3.03888 3.22612 3.27786 3.35650 3.37467 3.38431 4.16104 4.28047 4.40464 4.48399 4.53960 4.57805 4.63090 4.71743 4.96617 5.08623 5.16416 5.19717 5.23866 5.31969 5.34485 5.36448 5.39054 5.47579 5.47990 5.49671 5.53234 5.61857 5.78540 5.81446 5.83298 5.86033 5.91591 5.95716 6.19631 6.29471 6.32715 6.52543 6.68551 6.78959 6.86056 7.13515 7.16486 7.28759 7.60034 7.71167 7.89477 8.46327 8.94247 9.51943 11.03508 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002504 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.656897 B =11179.719335 C =12284.143376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C 0.109 3.891 4 H 0.083 0.917 5 C 0.049 3.951 6 O -0.374 6.374 7 C 0.098 3.902 8 C -0.135 4.135 9 C -0.176 4.176 10 C 0.030 3.970 11 N -0.580 5.580 12 C 0.510 3.490 13 O -0.513 6.513 14 C 0.503 3.497 15 O -0.518 6.518 16 N -0.686 5.686 17 C 0.110 3.890 18 C -0.115 4.115 19 C -0.010 4.010 20 C -0.524 4.524 21 H 0.072 0.928 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.265 1.265 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.413 0.587 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.352 18.162 -2.135 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.006 3.994 4 H 0.101 0.899 5 C -0.029 4.029 6 O -0.293 6.293 7 C 0.059 3.941 8 C -0.193 4.193 9 C -0.233 4.233 10 C -0.091 4.091 11 N -0.314 5.314 12 C 0.293 3.707 13 O -0.389 6.389 14 C 0.284 3.716 15 O -0.397 6.397 16 N -0.337 5.337 17 C -0.012 4.012 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.562 4.562 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.184 0.816 43 H 0.250 0.750 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.037 0.963 49 H 0.033 0.967 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.145 18.386 -2.088 29.633 hybrid contribution 0.519 0.043 -0.013 0.521 sum -22.626 18.429 -2.101 29.257 Atomic orbital electron populations 1.21969 0.96106 1.02182 1.01552 1.22084 0.94545 0.93465 1.05634 1.22097 0.78769 0.98858 0.99633 0.89858 1.23055 0.97996 0.85175 0.96639 1.87994 1.20170 1.27791 1.93326 1.21937 0.81240 0.96854 0.94114 1.21707 1.01187 0.93361 1.03028 1.22371 1.03054 1.00390 0.97525 1.24017 1.03877 0.83254 0.97976 1.48003 1.06457 1.07809 1.69100 1.20179 0.88231 0.83883 0.78385 1.90784 1.70010 1.31109 1.46983 1.20192 0.88137 0.84899 0.78398 1.90292 1.70329 1.29075 1.49994 1.46056 1.09226 1.08726 1.69643 1.21889 0.76388 1.00543 1.02380 1.21746 0.99258 0.92143 1.02192 1.19496 0.90245 0.98328 0.96698 1.21081 0.92952 0.91568 1.50567 0.90943 1.25032 0.98376 0.95563 0.94494 1.69910 1.14038 1.19491 1.50611 0.86773 0.80661 0.83186 0.78638 1.20232 1.21352 1.18914 0.92101 0.92681 0.92872 0.91152 0.88222 0.87483 0.92197 0.90400 0.91475 0.91606 0.92397 0.91638 0.90865 0.90784 0.81640 0.75025 0.90979 0.90948 0.91784 0.91795 0.96253 0.96674 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.66 37.16 0.36 -0.75 16 2 C -0.12 -1.12 3.92 -26.73 -0.10 -1.22 16 3 C 0.11 1.01 3.21 -67.63 -0.22 0.80 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C 0.05 0.41 5.22 37.10 0.19 0.60 16 6 O -0.37 -3.70 10.23 -35.23 -0.36 -4.06 16 7 C 0.10 0.91 1.11 -90.46 -0.10 0.81 16 8 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 9 C -0.18 -1.60 8.10 37.16 0.30 -1.30 16 10 C 0.03 0.31 5.08 -3.53 -0.02 0.29 16 11 N -0.58 -6.32 2.55 -165.49 -0.42 -6.74 16 12 C 0.51 6.40 7.63 -11.59 -0.09 6.31 16 13 O -0.51 -6.90 12.17 5.49 0.07 -6.83 16 14 C 0.50 6.76 7.81 -11.58 -0.09 6.67 16 15 O -0.52 -7.49 13.04 5.50 0.07 -7.42 16 16 N -0.69 -9.18 5.55 -60.73 -0.34 -9.51 16 17 C 0.11 1.66 5.67 -4.04 -0.02 1.63 16 18 C -0.12 -2.05 5.27 -26.73 -0.14 -2.20 16 19 C -0.01 -0.22 4.04 -27.89 -0.11 -0.33 16 20 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 21 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 24 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.31 6.34 -51.93 -0.33 -0.02 16 31 H 0.07 0.75 7.35 -51.93 -0.38 0.37 16 32 H 0.10 1.12 6.20 -51.93 -0.32 0.80 16 33 H 0.11 0.70 6.78 -51.93 -0.35 0.35 16 34 H 0.06 0.51 6.24 -51.93 -0.32 0.19 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.57 6.11 -51.93 -0.32 0.26 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.17 1.93 3.91 -56.51 -0.22 1.71 16 43 H 0.41 5.11 7.96 -40.82 -0.32 4.79 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 49 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -30.76 384.23 -7.65 -38.41 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.42 Total: 2.81 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.14 Total: -2.38 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.02 Total: -42.91 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.22 Total: -18.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.76 -7.65 -38.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593928398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.181 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds