Wall clock time and date at job start Tue Mar 31 2020 15:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 H 1.08998 * 109.70869 * 61.96600 * 3 2 1 5 5 C 1.52882 * 109.61550 * 301.66666 * 3 2 1 6 6 O 1.42962 * 109.29538 * 188.11758 * 5 3 2 7 7 C 1.42954 * 114.17107 * 62.44697 * 6 5 3 8 8 C 1.53000 * 109.51772 * 177.49361 * 7 6 5 9 9 C 1.53007 * 109.55343 * 57.36675 * 7 6 5 10 10 C 1.53295 * 109.22543 * 297.42390 * 7 6 5 11 11 N 1.47149 * 109.67931 * 182.50755 * 3 2 1 12 12 C 1.34769 * 120.98425 * 350.27664 * 11 3 2 13 13 O 1.21354 * 120.00257 * 357.09622 * 12 11 3 14 14 C 1.49455 * 120.00064 * 177.09338 * 12 11 3 15 15 O 1.21344 * 120.00060 * 6.25070 * 14 12 11 16 16 N 1.34780 * 119.99937 * 186.24520 * 14 12 11 17 17 C 1.46495 * 119.99820 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47279 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47532 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47266 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99905 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00077 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00078 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99787 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47079 * 90.00190 * 24 22 20 26 26 H 1.48503 * 109.47401 * 209.99963 * 24 22 20 27 27 H 1.48493 * 109.47549 * 330.00208 * 24 22 20 28 28 H 1.08995 * 109.47207 * 175.22345 * 1 2 3 29 29 H 1.09005 * 109.47103 * 295.21799 * 1 2 3 30 30 H 1.08996 * 109.47515 * 55.21615 * 1 2 3 31 31 H 1.08995 * 109.47249 * 240.00016 * 2 1 3 32 32 H 1.08999 * 109.46987 * 119.99756 * 2 1 3 33 33 H 1.08999 * 109.58358 * 68.10363 * 5 3 2 34 34 H 1.09003 * 109.40952 * 308.02148 * 5 3 2 35 35 H 1.08999 * 109.47351 * 179.74459 * 8 7 6 36 36 H 1.09002 * 109.46859 * 299.75130 * 8 7 6 37 37 H 1.09005 * 109.46744 * 59.75094 * 8 7 6 38 38 H 1.09003 * 109.47180 * 300.23145 * 9 7 6 39 39 H 1.09000 * 109.46692 * 60.22891 * 9 7 6 40 40 H 1.08991 * 109.47119 * 180.22799 * 9 7 6 41 41 H 1.09001 * 109.68002 * 292.57516 * 10 7 6 42 42 H 1.08996 * 109.68731 * 172.02670 * 10 7 6 43 43 H 0.96996 * 119.99764 * 0.02562 * 16 14 12 44 44 H 1.09002 * 109.47413 * 300.00556 * 17 16 14 45 45 H 1.09002 * 109.47158 * 60.00533 * 17 16 14 46 46 H 1.08997 * 109.46991 * 300.00021 * 18 17 16 47 47 H 1.09002 * 109.46794 * 60.00060 * 18 17 16 48 48 H 1.09002 * 109.47250 * 300.00362 * 19 18 17 49 49 H 1.09001 * 109.46690 * 59.99798 * 19 18 17 50 50 H 0.97000 * 119.99718 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7078 1.9499 0.9057 5 6 1.4983 2.1784 -1.2257 6 8 2.1251 3.4596 -1.3228 7 6 3.5411 3.4056 -1.5120 8 6 4.0910 4.8253 -1.6638 9 6 3.8589 2.5971 -2.7715 10 6 4.1876 2.7334 -0.2955 11 7 3.5102 1.4484 -0.0606 12 6 4.2153 0.3096 0.0890 13 8 3.6414 -0.7323 0.3293 14 6 5.7040 0.3299 -0.0411 15 8 6.2876 1.3861 -0.1682 16 7 6.3983 -0.8251 -0.0172 17 6 7.8575 -0.8052 -0.1453 18 6 8.3941 -2.2369 -0.0882 19 6 9.9181 -2.2162 -0.2213 20 6 10.4466 -3.6264 -0.1644 21 1 9.7637 -4.4545 -0.0456 22 6 11.8019 -3.8592 -0.2640 23 7 12.2630 -5.0899 -0.2148 24 14 12.9829 -2.4267 -0.4702 25 1 13.4156 -1.9456 0.8664 26 1 14.1698 -2.8711 -1.2443 27 1 12.3025 -1.3247 -1.1965 28 1 -0.3633 -1.0240 -0.0856 29 1 -0.3633 0.4379 0.9298 30 1 -0.3634 0.5862 -0.8440 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4203 2.3070 -1.1278 34 1 1.7158 1.5978 -2.1222 35 1 5.1711 4.7836 -1.8035 36 1 3.6308 5.3026 -2.5290 37 1 3.8626 5.4012 -0.7669 38 1 3.4653 1.5864 -2.6634 39 1 3.3989 3.0756 -3.6361 40 1 4.9388 2.5534 -2.9123 41 1 4.0755 3.3729 0.5801 42 1 5.2459 2.5603 -0.4909 43 1 5.9318 -1.6694 0.0841 44 1 8.1326 -0.3523 -1.0979 45 1 8.2861 -0.2235 0.6708 46 1 8.1191 -2.6902 0.8641 47 1 7.9655 -2.8184 -0.9046 48 1 10.1936 -1.7627 -1.1735 49 1 10.3462 -1.6349 0.5953 50 1 13.2165 -5.2536 -0.2853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593928398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:07 Heat of formation + Delta-G solvation = -118.161857 kcal Electronic energy + Delta-G solvation = -29101.366190 eV Core-core repulsion = 25128.817668 eV Total energy + Delta-G solvation = -3972.548522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48980 -40.68978 -39.58795 -37.35095 -36.47442 -35.59959 -35.03268 -33.36109 -33.31953 -29.52518 -29.17509 -28.28431 -27.62530 -26.49731 -24.94776 -23.55415 -22.56250 -22.23921 -21.16135 -20.61033 -19.05374 -18.72315 -18.04994 -17.58687 -17.34523 -17.02861 -16.50666 -16.38835 -16.12793 -15.94726 -15.89917 -15.51704 -15.06763 -14.80378 -14.74461 -14.59512 -14.20530 -13.95159 -13.82007 -13.65213 -13.46040 -13.22015 -13.01244 -12.95194 -12.78766 -12.75558 -12.68756 -12.44086 -12.27957 -11.90387 -11.81642 -11.74241 -11.61416 -11.59143 -11.37084 -11.33246 -11.13111 -10.75546 -10.33918 -9.94132 -9.64687 -8.28467 -6.33082 0.23268 1.12757 1.38847 1.40386 1.52051 2.01616 2.27708 2.37594 2.67612 3.07471 3.16416 3.54005 3.74843 3.83460 3.84255 3.94218 4.00643 4.02207 4.17028 4.31289 4.37212 4.45705 4.48121 4.54186 4.61654 4.69452 4.72152 4.76503 4.80025 4.86108 4.87519 4.90714 4.94277 5.01632 5.05444 5.15868 5.21220 5.24892 5.30847 5.35132 5.46753 5.53102 5.55289 5.65387 5.86987 6.11719 6.15337 6.27953 6.61968 6.75587 6.85184 7.31806 8.88201 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002504 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.656897 B =11179.719335 C =12284.143376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.107 3.893 4 H 0.090 0.910 5 C 0.050 3.950 6 O -0.382 6.382 7 C 0.098 3.902 8 C -0.133 4.133 9 C -0.173 4.173 10 C 0.029 3.971 11 N -0.576 5.576 12 C 0.509 3.491 13 O -0.527 6.527 14 C 0.503 3.497 15 O -0.527 6.527 16 N -0.684 5.684 17 C 0.124 3.876 18 C -0.105 4.105 19 C -0.010 4.010 20 C -0.533 4.533 21 H 0.033 0.967 22 C 0.002 3.998 23 N -0.953 5.953 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.287 1.287 27 H -0.242 1.242 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.157 0.843 43 H 0.418 0.582 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.024 0.976 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.410 20.974 -2.530 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C 0.005 3.995 4 H 0.108 0.892 5 C -0.027 4.027 6 O -0.301 6.301 7 C 0.058 3.942 8 C -0.191 4.191 9 C -0.230 4.230 10 C -0.092 4.092 11 N -0.309 5.309 12 C 0.292 3.708 13 O -0.404 6.404 14 C 0.285 3.715 15 O -0.407 6.407 16 N -0.335 5.335 17 C 0.002 3.998 18 C -0.143 4.143 19 C -0.048 4.048 20 C -0.571 4.571 21 H 0.052 0.948 22 C -0.195 4.195 23 N -0.594 5.594 24 Si 0.774 3.226 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.165 1.165 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.173 0.827 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.042 0.958 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.243 21.225 -2.485 32.317 hybrid contribution 0.765 -0.897 0.127 1.186 sum -23.478 20.328 -2.357 31.144 Atomic orbital electron populations 1.21928 0.94023 1.02638 1.02687 1.21917 0.96268 0.93058 1.03741 1.22257 0.77651 0.99019 1.00571 0.89169 1.23153 0.99092 0.84565 0.95868 1.87993 1.20351 1.28459 1.93271 1.21997 0.81088 0.97697 0.93400 1.21721 1.01578 0.92276 1.03514 1.22341 1.02886 0.99836 0.97932 1.24006 1.03347 0.82975 0.98823 1.48100 1.07261 1.07529 1.68028 1.20024 0.87776 0.84269 0.78728 1.90799 1.70029 1.31674 1.47921 1.20378 0.88624 0.84557 0.77976 1.90314 1.70751 1.29339 1.50283 1.45925 1.08582 1.09189 1.69823 1.21579 0.77274 0.98258 1.02737 1.21521 0.96446 0.94200 1.02123 1.19450 0.93162 0.94970 0.97205 1.21484 0.92693 0.93301 1.49639 0.94824 1.26043 1.00613 0.98534 0.94282 1.70073 1.14601 1.22174 1.52503 0.85650 0.77945 0.79838 0.79176 1.19237 1.21300 1.16489 0.92127 0.91797 0.91355 0.92759 0.90379 0.85191 0.92425 0.89763 0.90811 0.91259 0.93503 0.90723 0.91111 0.90308 0.82714 0.74495 0.90571 0.90689 0.91981 0.91888 0.95552 0.95764 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.66 71.98 0.70 -1.17 16 2 C -0.11 -2.00 3.92 30.60 0.12 -1.88 16 3 C 0.11 1.84 3.21 44.83 0.14 1.98 16 4 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 5 C 0.05 0.74 5.22 71.94 0.38 1.11 16 6 O -0.38 -6.71 10.23 -148.98 -1.52 -8.24 16 7 C 0.10 1.63 1.11 -10.69 -0.01 1.62 16 8 C -0.13 -1.74 8.85 71.98 0.64 -1.10 16 9 C -0.17 -2.89 8.10 71.98 0.58 -2.30 16 10 C 0.03 0.57 5.08 86.35 0.44 1.00 16 11 N -0.58 -11.99 2.55 -795.85 -2.03 -14.02 16 12 C 0.51 12.49 7.63 87.27 0.67 13.16 16 13 O -0.53 -14.13 12.17 -3.26 -0.04 -14.17 16 14 C 0.50 13.08 7.81 87.27 0.68 13.76 16 15 O -0.53 -14.62 13.04 -3.23 -0.04 -14.67 16 16 N -0.68 -17.64 5.55 -464.41 -2.58 -20.22 16 17 C 0.12 3.54 5.67 86.38 0.49 4.03 16 18 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 19 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 20 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 21 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 22 C 0.00 0.11 5.47 84.65 0.46 0.57 16 23 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 24 Si 0.95 43.29 27.47 68.60 1.88 45.17 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.62 6.34 -2.39 -0.02 0.60 16 31 H 0.05 1.14 7.35 -2.39 -0.02 1.12 16 32 H 0.08 1.75 6.20 -2.39 -0.01 1.74 16 33 H 0.13 1.30 6.78 -2.39 -0.02 1.28 16 34 H 0.06 0.89 6.24 -2.39 -0.01 0.87 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 38 H 0.05 0.88 6.11 -2.39 -0.01 0.86 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.16 3.43 3.91 -74.92 -0.29 3.14 16 43 H 0.42 10.09 7.96 -92.71 -0.74 9.36 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 49 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 50 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.67 384.23 1.65 -65.02 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.14 Total: 22.91 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.81 Total: -2.68 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -4.30 Total: -93.34 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.61 Total: -37.07 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -66.67 1.65 -65.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593928398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.142 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds