Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 H 1.09005 * 109.55744 * 305.12679 * 3 2 1 5 5 C 1.53298 * 109.51474 * 184.99797 * 3 2 1 6 6 N 1.47154 * 108.38610 * 187.77511 * 5 3 2 7 7 C 1.34774 * 120.98102 * 230.51768 * 6 5 3 8 8 O 1.21352 * 119.99903 * 181.61230 * 7 6 5 9 9 C 1.49453 * 120.00216 * 1.60239 * 7 6 5 10 10 O 1.21350 * 119.99781 * 353.55541 * 9 7 6 11 11 N 1.34775 * 119.99937 * 173.55857 * 9 7 6 12 12 C 1.46500 * 119.99824 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47372 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47544 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47308 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99952 * 180.27347 * 15 14 13 18 18 N 1.31517 * 120.00155 * 359.72531 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 179.71736 * 17 15 14 20 20 H 1.48507 * 109.46486 * 60.00287 * 19 17 15 21 21 H 1.48493 * 109.47203 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47363 * 300.00433 * 19 17 15 23 23 C 1.47149 * 118.03430 * 50.78787 * 6 5 3 24 24 H 1.09002 * 109.68159 * 189.49066 * 23 6 5 25 25 C 1.52999 * 109.68029 * 68.93709 * 23 6 5 26 26 C 1.52995 * 109.47144 * 65.00350 * 25 23 6 27 27 C 1.53714 * 108.16121 * 309.15915 * 23 6 5 28 28 O 1.42958 * 109.51247 * 65.25413 * 3 2 1 29 29 H 1.09006 * 109.47393 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47701 * 299.99805 * 1 2 3 32 32 H 1.09001 * 109.47013 * 240.00122 * 2 1 3 33 33 H 1.08993 * 109.47324 * 120.00327 * 2 1 3 34 34 H 1.09001 * 109.67574 * 68.05176 * 5 3 2 35 35 H 1.08996 * 109.71429 * 307.52153 * 5 3 2 36 36 H 0.97000 * 120.00171 * 0.02562 * 11 9 7 37 37 H 1.08998 * 109.47238 * 59.99633 * 12 11 9 38 38 H 1.09007 * 109.47034 * 299.99929 * 12 11 9 39 39 H 1.08998 * 109.47246 * 59.99629 * 13 12 11 40 40 H 1.09007 * 109.46976 * 299.99956 * 13 12 11 41 41 H 1.08998 * 109.47195 * 59.99544 * 14 13 12 42 42 H 1.09007 * 109.46904 * 299.99947 * 14 13 12 43 43 H 0.96999 * 119.99576 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46782 * 184.99680 * 25 23 6 45 45 H 1.08994 * 109.47201 * 304.99364 * 25 23 6 46 46 H 1.09004 * 109.46734 * 299.99360 * 26 25 23 47 47 H 1.08994 * 109.47877 * 59.99428 * 26 25 23 48 48 H 1.08999 * 109.46794 * 180.02562 * 26 25 23 49 49 H 1.09008 * 109.65645 * 292.56855 * 27 23 6 50 50 H 1.09004 * 109.48442 * 172.40428 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9835 -0.8401 5 6 3.5678 1.4455 -0.1259 6 7 4.0465 2.8239 0.0645 7 6 4.8918 3.3928 -0.8177 8 8 5.2984 4.5203 -0.6280 9 6 5.3286 2.6349 -2.0295 10 8 5.0177 1.4693 -2.1609 11 7 6.0679 3.2461 -2.9763 12 6 6.4956 2.5034 -4.1644 13 6 7.3156 3.4221 -5.0724 14 6 7.7618 2.6467 -6.3136 15 6 8.5699 3.5514 -7.2076 16 1 8.7472 4.5771 -6.9195 17 6 9.0778 3.0715 -8.3962 18 7 8.8615 1.8226 -8.7472 19 14 10.0729 4.1952 -9.5082 20 1 11.2704 4.6814 -8.7766 21 1 10.5020 3.4439 -10.7150 22 1 9.2381 5.3536 -9.9164 23 6 3.5797 3.5606 1.2496 24 1 3.8751 4.6070 1.1713 25 6 4.1884 2.9457 2.5114 26 6 5.7062 3.1371 2.4909 27 6 2.0471 3.4565 1.3057 28 8 1.6673 2.0807 1.2237 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8552 1.0904 -1.1155 35 1 4.0008 0.7979 0.6364 36 1 6.3168 4.1777 -2.8710 37 1 5.6190 2.1461 -4.7047 38 1 7.1068 1.6533 -3.8610 39 1 8.1923 3.7790 -4.5319 40 1 6.7048 4.2724 -5.3759 41 1 6.8849 2.2901 -6.8539 42 1 8.3724 1.7961 -6.0105 43 1 9.2191 1.4850 -9.5832 44 1 3.7724 3.4359 3.3916 45 1 3.9568 1.8811 2.5449 46 1 6.1223 2.6468 1.6107 47 1 5.9379 4.2016 2.4574 48 1 6.1399 2.6985 3.3896 49 1 1.6115 4.0048 0.4704 50 1 1.6881 3.8781 2.2446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593929186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = -122.642761 kcal Electronic energy + Delta-G solvation = -28632.075255 eV Core-core repulsion = 24659.332426 eV Total energy + Delta-G solvation = -3972.742829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31177 -39.60405 -38.35105 -36.11110 -35.61234 -34.41320 -33.41032 -32.87371 -31.31196 -29.71983 -28.37814 -27.18042 -25.00708 -24.47974 -23.59997 -22.76657 -21.68877 -20.94058 -20.39955 -19.43583 -17.81700 -17.44261 -16.87805 -16.48160 -16.35602 -16.02246 -15.47826 -15.26307 -14.98112 -14.84430 -14.49310 -14.44186 -14.21601 -14.02769 -13.63677 -13.54916 -13.36330 -12.70332 -12.69390 -12.32883 -12.25944 -11.94344 -11.89863 -11.84182 -11.66533 -11.33158 -11.30014 -11.23242 -11.16850 -10.91939 -10.80856 -10.71599 -10.63672 -10.40975 -9.94862 -9.62357 -9.24031 -9.14816 -9.04299 -8.85077 -8.40471 -6.05439 -4.08646 1.31152 2.12934 3.09227 3.29249 3.30546 3.35301 3.37540 3.42753 4.19593 4.33889 4.36443 4.42094 4.59955 4.68297 4.75996 4.81949 5.01802 5.03668 5.09367 5.20817 5.25871 5.30540 5.31894 5.39566 5.50990 5.51847 5.54362 5.62405 5.67071 5.70334 5.71347 5.80142 5.84806 6.01270 6.01874 6.03584 6.04201 6.34018 6.48245 6.66678 6.81503 6.85313 6.90869 7.21688 7.57766 7.63309 7.69262 7.92319 7.95669 8.33618 8.97564 9.55864 11.05792 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002257 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.871669 B =12400.263596 C =13375.694873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.062 0.938 5 C 0.025 3.975 6 N -0.579 5.579 7 C 0.510 3.490 8 O -0.520 6.520 9 C 0.504 3.496 10 O -0.517 6.517 11 N -0.686 5.686 12 C 0.112 3.888 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.101 3.899 24 H 0.109 0.891 25 C -0.125 4.125 26 C -0.149 4.149 27 C 0.056 3.944 28 O -0.374 6.374 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.165 0.835 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 -0.170 23.416 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.080 0.920 5 C -0.097 4.097 6 N -0.313 5.313 7 C 0.293 3.707 8 O -0.396 6.396 9 C 0.285 3.715 10 O -0.396 6.396 11 N -0.336 5.336 12 C -0.010 4.010 13 C -0.161 4.161 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.002 4.002 24 H 0.127 0.873 25 C -0.163 4.163 26 C -0.207 4.207 27 C -0.021 4.021 28 O -0.293 6.293 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.181 0.819 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.522 -0.605 23.384 28.074 hybrid contribution 0.851 1.159 -0.727 1.611 sum -14.671 0.554 22.657 26.998 Atomic orbital electron populations 1.21701 0.95041 1.01650 1.02193 1.21487 0.96802 0.93572 1.03290 1.22603 0.93551 0.94804 0.87010 0.92034 1.23950 0.94280 0.81771 1.09649 1.48021 1.44889 1.15615 1.22746 1.20218 0.79814 0.86486 0.84182 1.90752 1.54612 1.18313 1.75879 1.20054 0.80177 0.87104 0.84196 1.90320 1.55103 1.16568 1.77582 1.46120 1.50590 1.16357 1.20569 1.21895 0.99491 0.95750 0.83826 1.21935 0.98112 0.98428 0.97630 1.19021 0.96552 0.95403 0.90260 1.21156 1.33171 0.97531 1.04378 0.92628 1.25022 0.96371 0.95103 0.97902 1.69950 1.45590 1.14388 1.23374 0.86632 0.80532 0.80668 0.80018 1.20208 1.21255 1.20213 1.22202 0.94740 0.98330 0.84979 0.87347 1.21747 0.96237 1.02159 0.96193 1.21718 0.95322 1.02030 1.01591 1.23024 0.92451 0.83730 1.02916 1.87936 1.79843 1.23308 1.38188 0.92893 0.92605 0.92068 0.89902 0.90925 0.81915 0.90735 0.75187 0.90918 0.90915 0.92388 0.92425 0.96194 0.96194 0.92828 0.90623 0.90951 0.93043 0.92442 0.92608 0.92615 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 37.16 0.36 -0.71 16 2 C -0.11 -0.88 5.64 -26.73 -0.15 -1.03 16 3 C 0.08 0.72 2.78 -26.58 -0.07 0.64 16 4 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 5 C 0.02 0.25 5.27 -3.53 -0.02 0.24 16 6 N -0.58 -6.40 2.21 -165.00 -0.36 -6.76 16 7 C 0.51 6.75 7.48 -11.58 -0.09 6.67 16 8 O -0.52 -7.65 15.97 5.50 0.09 -7.57 16 9 C 0.50 7.20 7.81 -11.58 -0.09 7.11 16 10 O -0.52 -7.93 13.04 5.50 0.07 -7.86 16 11 N -0.69 -9.84 5.55 -60.73 -0.34 -10.17 16 12 C 0.11 1.84 5.67 -4.04 -0.02 1.81 16 13 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 14 C 0.03 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.10 0.92 2.63 -67.21 -0.18 0.74 16 24 H 0.11 1.07 7.09 -51.93 -0.37 0.70 16 25 C -0.13 -1.02 5.36 -26.73 -0.14 -1.16 16 26 C -0.15 -1.37 9.80 37.16 0.36 -1.00 16 27 C 0.06 0.45 6.38 37.53 0.24 0.69 16 28 O -0.37 -3.47 9.64 -35.23 -0.34 -3.81 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 7.83 -51.93 -0.41 0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.16 1.96 3.96 -56.37 -0.22 1.73 16 35 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 36 H 0.41 5.46 7.96 -40.82 -0.32 5.13 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.64 7.12 -51.93 -0.37 0.27 16 46 H 0.05 0.57 7.49 -51.93 -0.39 0.18 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 50 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -30.52 399.29 -8.41 -38.94 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.78 Total: 1.80 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.49 Total: -1.19 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.04 Total: -42.62 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.18 Total: -19.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.52 -8.41 -38.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593929186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.707 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds