Wall clock time and date at job start Tue Mar 31 2020 15:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 H 1.09005 * 109.55744 * 305.12679 * 3 2 1 5 5 C 1.53298 * 109.51474 * 184.99797 * 3 2 1 6 6 N 1.47154 * 108.38610 * 187.77511 * 5 3 2 7 7 C 1.34774 * 120.98102 * 230.51768 * 6 5 3 8 8 O 1.21352 * 119.99903 * 181.61230 * 7 6 5 9 9 C 1.49453 * 120.00216 * 1.60239 * 7 6 5 10 10 O 1.21350 * 119.99781 * 353.55541 * 9 7 6 11 11 N 1.34775 * 119.99937 * 173.55857 * 9 7 6 12 12 C 1.46500 * 119.99824 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47372 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47544 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47308 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99952 * 180.27347 * 15 14 13 18 18 N 1.31517 * 120.00155 * 359.72531 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 179.71736 * 17 15 14 20 20 H 1.48507 * 109.46486 * 60.00287 * 19 17 15 21 21 H 1.48493 * 109.47203 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47363 * 300.00433 * 19 17 15 23 23 C 1.47149 * 118.03430 * 50.78787 * 6 5 3 24 24 H 1.09002 * 109.68159 * 189.49066 * 23 6 5 25 25 C 1.52999 * 109.68029 * 68.93709 * 23 6 5 26 26 C 1.52995 * 109.47144 * 65.00350 * 25 23 6 27 27 C 1.53714 * 108.16121 * 309.15915 * 23 6 5 28 28 O 1.42958 * 109.51247 * 65.25413 * 3 2 1 29 29 H 1.09006 * 109.47393 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47701 * 299.99805 * 1 2 3 32 32 H 1.09001 * 109.47013 * 240.00122 * 2 1 3 33 33 H 1.08993 * 109.47324 * 120.00327 * 2 1 3 34 34 H 1.09001 * 109.67574 * 68.05176 * 5 3 2 35 35 H 1.08996 * 109.71429 * 307.52153 * 5 3 2 36 36 H 0.97000 * 120.00171 * 0.02562 * 11 9 7 37 37 H 1.08998 * 109.47238 * 59.99633 * 12 11 9 38 38 H 1.09007 * 109.47034 * 299.99929 * 12 11 9 39 39 H 1.08998 * 109.47246 * 59.99629 * 13 12 11 40 40 H 1.09007 * 109.46976 * 299.99956 * 13 12 11 41 41 H 1.08998 * 109.47195 * 59.99544 * 14 13 12 42 42 H 1.09007 * 109.46904 * 299.99947 * 14 13 12 43 43 H 0.96999 * 119.99576 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46782 * 184.99680 * 25 23 6 45 45 H 1.08994 * 109.47201 * 304.99364 * 25 23 6 46 46 H 1.09004 * 109.46734 * 299.99360 * 26 25 23 47 47 H 1.08994 * 109.47877 * 59.99428 * 26 25 23 48 48 H 1.08999 * 109.46794 * 180.02562 * 26 25 23 49 49 H 1.09008 * 109.65645 * 292.56855 * 27 23 6 50 50 H 1.09004 * 109.48442 * 172.40428 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9835 -0.8401 5 6 3.5678 1.4455 -0.1259 6 7 4.0465 2.8239 0.0645 7 6 4.8918 3.3928 -0.8177 8 8 5.2984 4.5203 -0.6280 9 6 5.3286 2.6349 -2.0295 10 8 5.0177 1.4693 -2.1609 11 7 6.0679 3.2461 -2.9763 12 6 6.4956 2.5034 -4.1644 13 6 7.3156 3.4221 -5.0724 14 6 7.7618 2.6467 -6.3136 15 6 8.5699 3.5514 -7.2076 16 1 8.7472 4.5771 -6.9195 17 6 9.0778 3.0715 -8.3962 18 7 8.8615 1.8226 -8.7472 19 14 10.0729 4.1952 -9.5082 20 1 11.2704 4.6814 -8.7766 21 1 10.5020 3.4439 -10.7150 22 1 9.2381 5.3536 -9.9164 23 6 3.5797 3.5606 1.2496 24 1 3.8751 4.6070 1.1713 25 6 4.1884 2.9457 2.5114 26 6 5.7062 3.1371 2.4909 27 6 2.0471 3.4565 1.3057 28 8 1.6673 2.0807 1.2237 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8552 1.0904 -1.1155 35 1 4.0008 0.7979 0.6364 36 1 6.3168 4.1777 -2.8710 37 1 5.6190 2.1461 -4.7047 38 1 7.1068 1.6533 -3.8610 39 1 8.1923 3.7790 -4.5319 40 1 6.7048 4.2724 -5.3759 41 1 6.8849 2.2901 -6.8539 42 1 8.3724 1.7961 -6.0105 43 1 9.2191 1.4850 -9.5832 44 1 3.7724 3.4359 3.3916 45 1 3.9568 1.8811 2.5449 46 1 6.1223 2.6468 1.6107 47 1 5.9379 4.2016 2.4574 48 1 6.1399 2.6985 3.3896 49 1 1.6115 4.0048 0.4704 50 1 1.6881 3.8781 2.2446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593929186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:45 Heat of formation + Delta-G solvation = -141.680022 kcal Electronic energy + Delta-G solvation = -28632.900772 eV Core-core repulsion = 24659.332426 eV Total energy + Delta-G solvation = -3973.568346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29895 -40.56588 -39.37764 -37.34599 -36.57049 -35.44047 -34.99571 -33.64711 -33.07164 -30.41858 -29.37931 -28.71694 -26.28040 -25.32084 -24.59693 -24.00770 -22.51373 -22.36209 -21.53697 -20.38437 -18.89972 -18.51476 -18.34497 -17.63534 -17.42987 -17.16396 -16.51517 -16.48367 -16.04905 -16.03385 -15.80410 -15.45740 -15.23862 -14.84440 -14.56418 -14.40699 -14.25575 -14.19547 -13.80018 -13.61685 -13.47556 -13.40350 -12.91550 -12.73995 -12.62426 -12.55298 -12.45840 -12.36825 -12.18173 -12.00676 -11.93862 -11.82894 -11.70918 -11.56370 -11.44455 -11.23818 -11.16935 -10.54585 -10.39702 -10.19158 -9.70808 -8.19893 -6.30726 0.20838 1.11184 1.41818 1.44101 1.52022 1.98922 2.27212 2.42353 2.72485 3.14069 3.15042 3.57788 3.65362 3.89301 3.95157 4.03074 4.06210 4.13636 4.16940 4.34412 4.37489 4.41400 4.50372 4.53687 4.57290 4.60240 4.65228 4.75824 4.87282 4.90414 4.91448 4.98881 5.01130 5.06707 5.13947 5.14310 5.19324 5.25207 5.29810 5.38407 5.45190 5.51180 5.70274 5.83954 5.84677 6.09774 6.14081 6.23217 6.58491 6.82318 6.86097 7.38641 8.91767 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002257 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.871669 B =12400.263596 C =13375.694873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.083 3.917 4 H 0.055 0.945 5 C 0.027 3.973 6 N -0.572 5.572 7 C 0.511 3.489 8 O -0.538 6.538 9 C 0.503 3.497 10 O -0.529 6.529 11 N -0.682 5.682 12 C 0.127 3.873 13 C -0.106 4.106 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.097 3.903 24 H 0.104 0.896 25 C -0.119 4.119 26 C -0.147 4.147 27 C 0.057 3.943 28 O -0.378 6.378 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.419 0.581 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H -0.003 1.003 42 H -0.004 1.004 43 H 0.264 0.736 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 0.882 24.863 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.025 3.975 4 H 0.073 0.927 5 C -0.094 4.094 6 N -0.305 5.305 7 C 0.294 3.706 8 O -0.416 6.416 9 C 0.285 3.715 10 O -0.408 6.408 11 N -0.333 5.333 12 C 0.004 3.996 13 C -0.144 4.144 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.006 4.006 24 H 0.122 0.878 25 C -0.157 4.157 26 C -0.204 4.204 27 C -0.020 4.020 28 O -0.296 6.296 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.236 0.451 24.867 29.702 hybrid contribution 1.029 0.789 -1.116 1.711 sum -15.207 1.241 23.752 28.230 Atomic orbital electron populations 1.21671 0.94474 1.02233 1.01874 1.21500 0.97241 0.92660 1.03619 1.22555 0.92362 0.95639 0.86956 0.92704 1.23889 0.95338 0.81373 1.08847 1.48131 1.43724 1.15909 1.22720 1.19951 0.80309 0.86195 0.84147 1.90743 1.55629 1.18896 1.76302 1.20315 0.79756 0.87027 0.84436 1.90351 1.55383 1.17118 1.77989 1.45930 1.50790 1.16568 1.20053 1.21517 0.98843 0.95027 0.84178 1.21642 0.98883 0.98191 0.95716 1.18918 0.95026 0.94998 0.92228 1.21650 1.33249 0.98250 1.05001 0.91852 1.25965 0.97605 0.96593 0.99679 1.70086 1.46887 1.16317 1.24001 0.85520 0.79111 0.78699 0.77838 1.19210 1.21049 1.19152 1.22427 0.95805 0.97882 0.84454 0.87846 1.21733 0.95389 1.02077 0.96471 1.21695 0.96187 1.01491 1.01065 1.23169 0.91258 0.83197 1.04399 1.87941 1.79748 1.23973 1.37973 0.93079 0.91606 0.92469 0.89684 0.90511 0.83417 0.90207 0.74390 0.91302 0.91532 0.91603 0.91490 0.98418 0.98519 0.92763 0.88130 0.91305 0.95394 0.92905 0.91356 0.92776 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.81 71.98 0.71 -1.19 16 2 C -0.11 -1.61 5.64 30.59 0.17 -1.44 16 3 C 0.08 1.43 2.78 30.69 0.09 1.52 16 4 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 5 C 0.03 0.53 5.27 86.35 0.45 0.99 16 6 N -0.57 -12.24 2.21 -794.30 -1.75 -14.00 16 7 C 0.51 13.38 7.48 87.27 0.65 14.03 16 8 O -0.54 -15.62 15.97 -3.25 -0.05 -15.67 16 9 C 0.50 14.34 7.81 87.27 0.68 15.02 16 10 O -0.53 -16.30 13.04 -3.25 -0.04 -16.35 16 11 N -0.68 -19.36 5.55 -464.40 -2.58 -21.94 16 12 C 0.13 4.17 5.67 86.38 0.49 4.66 16 13 C -0.11 -4.00 5.27 30.59 0.16 -3.84 16 14 C 0.03 1.31 4.97 29.84 0.15 1.46 16 15 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.10 1.62 2.63 45.11 0.12 1.74 16 24 H 0.10 1.89 7.09 -2.39 -0.02 1.87 16 25 C -0.12 -1.69 5.36 30.59 0.16 -1.52 16 26 C -0.15 -2.52 9.80 71.98 0.71 -1.82 16 27 C 0.06 0.78 6.38 72.22 0.46 1.24 16 28 O -0.38 -6.26 9.64 -148.98 -1.44 -7.70 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.80 7.83 -2.39 -0.02 0.78 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.15 3.54 3.96 -72.69 -0.29 3.26 16 35 H 0.08 1.53 7.52 -2.39 -0.02 1.51 16 36 H 0.42 10.81 7.96 -92.71 -0.74 10.07 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.06 7.12 -2.39 -0.02 1.04 16 46 H 0.03 0.60 7.49 -2.39 -0.02 0.58 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -65.42 399.29 2.05 -63.37 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.10 Total: 21.01 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.70 Total: 1.48 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -4.04 Total: -91.74 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.53 Total: -39.71 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.42 2.05 -63.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593929186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.313 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds