Wall clock time and date at job start Tue Mar 31 2020 15:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47548 * 2 1 4 4 H 1.09005 * 109.50946 * 54.89614 * 3 2 1 5 5 C 1.53292 * 109.51607 * 174.99752 * 3 2 1 6 6 N 1.47147 * 108.38308 * 172.22756 * 5 3 2 7 7 C 1.34783 * 120.98252 * 129.44718 * 6 5 3 8 8 O 1.21347 * 120.00052 * 187.88493 * 7 6 5 9 9 C 1.49442 * 119.99698 * 7.87241 * 7 6 5 10 10 O 1.21347 * 120.00507 * 6.68931 * 9 7 6 11 11 N 1.34780 * 120.00024 * 186.40774 * 9 7 6 12 12 C 1.46496 * 120.00294 * 180.28273 * 11 9 7 13 13 C 1.53003 * 109.47174 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47097 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47333 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99298 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00302 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00608 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 120.00057 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47059 * 89.99571 * 19 17 15 21 21 H 1.48499 * 109.46885 * 209.99655 * 19 17 15 22 22 H 1.48497 * 109.46896 * 329.99704 * 19 17 15 23 23 C 1.47156 * 118.03810 * 309.71227 * 6 5 3 24 24 H 1.08993 * 109.68315 * 170.00624 * 23 6 5 25 25 C 1.53002 * 109.68266 * 290.56759 * 23 6 5 26 26 C 1.53001 * 109.46818 * 294.99551 * 25 23 6 27 27 C 1.52882 * 108.60194 * 50.22814 * 23 6 5 28 28 O 1.42953 * 109.30412 * 307.93683 * 27 23 6 29 29 H 1.09007 * 109.46585 * 60.00164 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47397 * 300.00243 * 1 2 3 32 32 H 1.09003 * 109.47639 * 239.99756 * 2 1 3 33 33 H 1.09002 * 109.47271 * 119.99753 * 2 1 3 34 34 H 1.08994 * 109.68034 * 52.50372 * 5 3 2 35 35 H 1.09004 * 109.68286 * 291.95294 * 5 3 2 36 36 H 0.97004 * 119.99529 * 0.27617 * 11 9 7 37 37 H 1.09003 * 109.46652 * 299.99989 * 12 11 9 38 38 H 1.08993 * 109.47518 * 59.99555 * 12 11 9 39 39 H 1.09004 * 109.46757 * 299.99826 * 13 12 11 40 40 H 1.08999 * 109.47062 * 59.99936 * 13 12 11 41 41 H 1.09004 * 109.47267 * 299.99626 * 14 13 12 42 42 H 1.08993 * 109.47465 * 59.99454 * 14 13 12 43 43 H 0.96994 * 120.00787 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.47129 * 54.99558 * 25 23 6 45 45 H 1.08997 * 109.46941 * 174.99890 * 25 23 6 46 46 H 1.09007 * 109.47248 * 60.00277 * 26 25 23 47 47 H 1.08999 * 109.47037 * 180.02562 * 26 25 23 48 48 H 1.09006 * 109.46929 * 300.00145 * 26 25 23 49 49 H 1.09001 * 109.58364 * 187.91949 * 27 23 6 50 50 H 1.09001 * 109.40690 * 67.84273 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9827 0.8406 5 6 3.5678 1.4454 0.1260 6 7 4.0465 2.8238 -0.0643 7 6 4.8913 3.3930 0.8183 8 8 5.1625 4.5721 0.7250 9 6 5.4937 2.5720 1.9121 10 8 5.3204 1.3712 1.9353 11 7 6.2343 3.1645 2.8697 12 6 6.8300 2.3589 3.9385 13 6 7.6134 3.2689 4.8868 14 6 8.2350 2.4276 6.0034 15 6 9.0061 3.3239 6.9378 16 1 9.0489 4.3872 6.7533 17 6 9.6569 2.7866 8.0280 18 7 10.3303 3.5686 8.8431 19 14 9.5835 0.9473 8.3465 20 1 10.7152 0.2796 7.6547 21 1 9.6770 0.6938 9.8067 22 1 8.3000 0.4066 7.8313 23 6 3.5710 3.5646 -1.2436 24 1 3.8605 4.6120 -1.1604 25 6 4.1785 2.9603 -2.5111 26 6 5.6953 3.1604 -2.4951 27 6 2.0473 3.4565 -1.3057 28 8 1.6674 2.0808 -1.2238 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0003 0.7980 -0.6368 35 1 3.8553 1.0903 1.1156 36 1 6.3729 4.1244 2.8512 37 1 6.0411 1.8502 4.4927 38 1 7.5034 1.6200 3.5043 39 1 8.4021 3.7779 4.3328 40 1 6.9395 4.0074 5.3210 41 1 7.4459 1.9189 6.5572 42 1 8.9086 1.6887 5.5695 43 1 10.7885 3.1906 9.6099 44 1 3.9531 1.8946 -2.5497 45 1 3.7563 3.4530 -3.3869 46 1 6.1176 2.6677 -1.6193 47 1 6.1281 2.7304 -3.3984 48 1 5.9208 4.2262 -2.4565 49 1 1.6891 3.8778 -2.2450 50 1 1.6110 4.0049 -0.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593929189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:59 Heat of formation + Delta-G solvation = -122.725967 kcal Electronic energy + Delta-G solvation = -28682.881607 eV Core-core repulsion = 24710.135170 eV Total energy + Delta-G solvation = -3972.746437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35641 -39.67548 -38.38606 -36.17455 -35.69440 -34.50313 -33.41333 -32.92051 -31.53106 -29.79381 -28.49339 -27.57731 -25.08774 -24.52471 -23.61935 -22.64650 -21.72439 -20.93846 -20.34138 -19.44292 -17.93643 -17.50099 -16.93346 -16.76913 -16.45092 -16.12821 -15.55721 -15.31461 -15.08939 -14.89964 -14.53386 -14.29118 -14.23374 -13.95289 -13.68769 -13.64280 -13.44625 -12.77754 -12.75155 -12.63248 -12.30669 -12.14614 -12.01715 -11.89515 -11.72350 -11.40241 -11.35138 -11.34665 -11.23547 -11.15258 -10.95254 -10.76144 -10.45298 -10.17932 -9.96961 -9.79611 -9.37159 -9.26958 -9.12251 -8.89567 -8.58872 -6.09053 -4.08347 1.26078 2.07495 3.02939 3.23565 3.28294 3.35975 3.36759 3.38998 4.16310 4.30064 4.31994 4.41027 4.54996 4.62099 4.68933 4.77383 4.95632 4.99381 5.05140 5.16875 5.19727 5.24484 5.27042 5.32443 5.37544 5.45049 5.48518 5.50942 5.63499 5.64812 5.65270 5.75805 5.79606 5.87202 5.96936 5.98071 6.00188 6.17470 6.33789 6.50983 6.69350 6.75524 6.78811 7.14515 7.17418 7.29564 7.56964 7.71749 7.89012 8.46977 8.94828 9.52583 11.04147 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.002394 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.467857 B =11692.892032 C =12666.332034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.062 0.938 5 C 0.046 3.954 6 N -0.581 5.581 7 C 0.511 3.489 8 O -0.518 6.518 9 C 0.503 3.497 10 O -0.519 6.519 11 N -0.688 5.688 12 C 0.111 3.889 13 C -0.115 4.115 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.101 3.899 24 H 0.110 0.890 25 C -0.126 4.126 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.373 6.373 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.107 0.893 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 -3.972 -24.008 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.080 0.920 5 C -0.075 4.075 6 N -0.316 5.316 7 C 0.294 3.706 8 O -0.393 6.393 9 C 0.283 3.717 10 O -0.398 6.398 11 N -0.339 5.339 12 C -0.011 4.011 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.002 4.002 24 H 0.128 0.872 25 C -0.164 4.164 26 C -0.208 4.208 27 C -0.022 4.022 28 O -0.291 6.291 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.163 0.837 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.125 0.875 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.133 -4.275 -23.986 30.979 hybrid contribution 0.366 -0.288 0.432 0.635 sum -18.768 -4.563 -23.554 30.460 Atomic orbital electron populations 1.21701 0.94972 1.01688 1.02235 1.21493 0.96860 0.93501 1.03315 1.22639 0.93474 0.94897 0.87195 0.92008 1.23489 0.94015 0.81903 1.08129 1.47977 1.44764 1.15537 1.23286 1.20244 0.79941 0.87349 0.83038 1.90756 1.60102 1.15154 1.73306 1.20036 0.80638 0.87849 0.83157 1.90512 1.59197 1.14514 1.75549 1.46068 1.49269 1.13015 1.25521 1.21878 0.97367 0.94632 0.87258 1.21747 0.98699 0.98378 0.96516 1.19498 0.95929 0.95904 0.93450 1.21081 1.30930 0.95644 1.08481 0.90943 1.25029 0.94706 0.97973 0.95756 1.69906 1.33487 1.35376 1.15295 0.86774 0.79120 0.86017 0.77358 1.20235 1.21352 1.18914 1.22031 0.94837 0.98367 0.84947 0.87228 1.21774 0.96247 1.02258 0.96146 1.21736 0.95395 1.01977 1.01703 1.22878 0.92554 0.83675 1.03051 1.87947 1.79816 1.23358 1.38009 0.92006 0.92575 0.92895 0.90828 0.89983 0.90443 0.83699 0.75084 0.90993 0.91000 0.91794 0.91788 0.96244 0.96676 0.92650 0.90903 0.90521 0.93031 0.92487 0.92485 0.87456 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.63 16 2 C -0.11 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.65 2.78 -26.58 -0.07 0.58 16 4 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 5 C 0.05 0.45 5.02 -3.54 -0.02 0.44 16 6 N -0.58 -6.18 2.21 -165.50 -0.37 -6.55 16 7 C 0.51 6.58 7.46 -11.59 -0.09 6.49 16 8 O -0.52 -7.49 15.97 5.50 0.09 -7.40 16 9 C 0.50 6.94 7.74 -11.59 -0.09 6.85 16 10 O -0.52 -7.72 13.21 5.50 0.07 -7.64 16 11 N -0.69 -9.48 5.55 -60.73 -0.34 -9.82 16 12 C 0.11 1.70 5.67 -4.04 -0.02 1.68 16 13 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 14 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 16 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 19 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 23 C 0.10 0.89 2.62 -67.63 -0.18 0.71 16 24 H 0.11 1.04 7.06 -51.93 -0.37 0.67 16 25 C -0.13 -0.98 5.34 -26.73 -0.14 -1.12 16 26 C -0.15 -1.33 9.80 37.16 0.36 -0.97 16 27 C 0.06 0.42 6.33 37.10 0.23 0.65 16 28 O -0.37 -3.27 9.65 -35.23 -0.34 -3.61 16 29 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.74 7.55 -51.93 -0.39 0.35 16 35 H 0.15 1.64 4.49 -53.95 -0.24 1.39 16 36 H 0.41 5.30 7.96 -40.82 -0.32 4.97 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.55 7.49 -51.93 -0.39 0.16 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.36 396.03 -8.06 -39.41 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.76 Total: 1.60 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.48 Total: -1.90 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.07 Total: -43.10 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.36 -8.06 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593929189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.311 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds