Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47548 * 2 1 4 4 H 1.09005 * 109.50946 * 54.89614 * 3 2 1 5 5 C 1.53292 * 109.51607 * 174.99752 * 3 2 1 6 6 N 1.47147 * 108.38308 * 172.22756 * 5 3 2 7 7 C 1.34783 * 120.98252 * 129.44718 * 6 5 3 8 8 O 1.21347 * 120.00052 * 187.88493 * 7 6 5 9 9 C 1.49442 * 119.99698 * 7.87241 * 7 6 5 10 10 O 1.21347 * 120.00507 * 6.68931 * 9 7 6 11 11 N 1.34780 * 120.00024 * 186.40774 * 9 7 6 12 12 C 1.46496 * 120.00294 * 180.28273 * 11 9 7 13 13 C 1.53003 * 109.47174 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47097 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47333 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99298 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00302 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00608 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 120.00057 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47059 * 89.99571 * 19 17 15 21 21 H 1.48499 * 109.46885 * 209.99655 * 19 17 15 22 22 H 1.48497 * 109.46896 * 329.99704 * 19 17 15 23 23 C 1.47156 * 118.03810 * 309.71227 * 6 5 3 24 24 H 1.08993 * 109.68315 * 170.00624 * 23 6 5 25 25 C 1.53002 * 109.68266 * 290.56759 * 23 6 5 26 26 C 1.53001 * 109.46818 * 294.99551 * 25 23 6 27 27 C 1.52882 * 108.60194 * 50.22814 * 23 6 5 28 28 O 1.42953 * 109.30412 * 307.93683 * 27 23 6 29 29 H 1.09007 * 109.46585 * 60.00164 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47397 * 300.00243 * 1 2 3 32 32 H 1.09003 * 109.47639 * 239.99756 * 2 1 3 33 33 H 1.09002 * 109.47271 * 119.99753 * 2 1 3 34 34 H 1.08994 * 109.68034 * 52.50372 * 5 3 2 35 35 H 1.09004 * 109.68286 * 291.95294 * 5 3 2 36 36 H 0.97004 * 119.99529 * 0.27617 * 11 9 7 37 37 H 1.09003 * 109.46652 * 299.99989 * 12 11 9 38 38 H 1.08993 * 109.47518 * 59.99555 * 12 11 9 39 39 H 1.09004 * 109.46757 * 299.99826 * 13 12 11 40 40 H 1.08999 * 109.47062 * 59.99936 * 13 12 11 41 41 H 1.09004 * 109.47267 * 299.99626 * 14 13 12 42 42 H 1.08993 * 109.47465 * 59.99454 * 14 13 12 43 43 H 0.96994 * 120.00787 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.47129 * 54.99558 * 25 23 6 45 45 H 1.08997 * 109.46941 * 174.99890 * 25 23 6 46 46 H 1.09007 * 109.47248 * 60.00277 * 26 25 23 47 47 H 1.08999 * 109.47037 * 180.02562 * 26 25 23 48 48 H 1.09006 * 109.46929 * 300.00145 * 26 25 23 49 49 H 1.09001 * 109.58364 * 187.91949 * 27 23 6 50 50 H 1.09001 * 109.40690 * 67.84273 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9827 0.8406 5 6 3.5678 1.4454 0.1260 6 7 4.0465 2.8238 -0.0643 7 6 4.8913 3.3930 0.8183 8 8 5.1625 4.5721 0.7250 9 6 5.4937 2.5720 1.9121 10 8 5.3204 1.3712 1.9353 11 7 6.2343 3.1645 2.8697 12 6 6.8300 2.3589 3.9385 13 6 7.6134 3.2689 4.8868 14 6 8.2350 2.4276 6.0034 15 6 9.0061 3.3239 6.9378 16 1 9.0489 4.3872 6.7533 17 6 9.6569 2.7866 8.0280 18 7 10.3303 3.5686 8.8431 19 14 9.5835 0.9473 8.3465 20 1 10.7152 0.2796 7.6547 21 1 9.6770 0.6938 9.8067 22 1 8.3000 0.4066 7.8313 23 6 3.5710 3.5646 -1.2436 24 1 3.8605 4.6120 -1.1604 25 6 4.1785 2.9603 -2.5111 26 6 5.6953 3.1604 -2.4951 27 6 2.0473 3.4565 -1.3057 28 8 1.6674 2.0808 -1.2238 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0003 0.7980 -0.6368 35 1 3.8553 1.0903 1.1156 36 1 6.3729 4.1244 2.8512 37 1 6.0411 1.8502 4.4927 38 1 7.5034 1.6200 3.5043 39 1 8.4021 3.7779 4.3328 40 1 6.9395 4.0074 5.3210 41 1 7.4459 1.9189 6.5572 42 1 8.9086 1.6887 5.5695 43 1 10.7885 3.1906 9.6099 44 1 3.9531 1.8946 -2.5497 45 1 3.7563 3.4530 -3.3869 46 1 6.1176 2.6677 -1.6193 47 1 6.1281 2.7304 -3.3984 48 1 5.9208 4.2262 -2.4565 49 1 1.6891 3.8778 -2.2450 50 1 1.6110 4.0049 -0.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593929189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = -143.183128 kcal Electronic energy + Delta-G solvation = -28683.768696 eV Core-core repulsion = 24710.135170 eV Total energy + Delta-G solvation = -3973.633526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28815 -40.58441 -39.37052 -37.34540 -36.59812 -35.42356 -35.00031 -33.66229 -33.30997 -30.45036 -29.57041 -28.92657 -26.25165 -25.29674 -24.47921 -23.90286 -22.49226 -22.26754 -21.48973 -20.36494 -19.10313 -18.69433 -18.42146 -17.63175 -17.47122 -17.14319 -16.54018 -16.37987 -16.06144 -15.91928 -15.81058 -15.46009 -15.14427 -14.84045 -14.77919 -14.63448 -14.36046 -14.22699 -13.82680 -13.70664 -13.42847 -13.40717 -12.92319 -12.77835 -12.71623 -12.59472 -12.42187 -12.25416 -12.03823 -11.93946 -11.89318 -11.83165 -11.77402 -11.61573 -11.45630 -11.33992 -11.16776 -10.75872 -10.46162 -10.24243 -9.71179 -8.28651 -6.33370 0.20940 1.11615 1.38547 1.40041 1.51794 1.98068 2.27633 2.37299 2.71342 3.07136 3.16927 3.58017 3.64863 3.88377 3.93730 3.99281 4.02254 4.12951 4.15906 4.33229 4.36768 4.40609 4.46075 4.52962 4.56531 4.60434 4.65522 4.75414 4.84612 4.85242 4.87674 4.95557 4.98951 5.01073 5.05853 5.13877 5.17705 5.23868 5.27330 5.32556 5.45111 5.45866 5.54513 5.64779 5.83321 6.10512 6.13140 6.27547 6.56104 6.75087 6.81266 7.31503 8.87962 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.002394 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.467857 B =11692.892032 C =12666.332034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.081 3.919 4 H 0.057 0.943 5 C 0.048 3.952 6 N -0.575 5.575 7 C 0.511 3.489 8 O -0.539 6.539 9 C 0.503 3.497 10 O -0.529 6.529 11 N -0.686 5.686 12 C 0.125 3.875 13 C -0.105 4.105 14 C -0.010 4.010 15 C -0.533 4.533 16 H 0.033 0.967 17 C 0.002 3.998 18 N -0.952 5.952 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.242 1.242 23 C 0.097 3.903 24 H 0.103 0.897 25 C -0.119 4.119 26 C -0.149 4.149 27 C 0.057 3.943 28 O -0.377 6.377 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.417 0.583 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.027 0.973 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.135 0.865 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 -5.789 -25.831 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.022 3.978 4 H 0.075 0.925 5 C -0.073 4.073 6 N -0.308 5.308 7 C 0.294 3.706 8 O -0.417 6.417 9 C 0.284 3.716 10 O -0.408 6.408 11 N -0.338 5.338 12 C 0.002 3.998 13 C -0.143 4.143 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.052 0.948 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.165 1.165 23 C -0.005 4.005 24 H 0.121 0.879 25 C -0.157 4.157 26 C -0.206 4.206 27 C -0.020 4.020 28 O -0.295 6.295 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.254 0.746 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.152 0.848 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.873 -6.099 -25.850 33.780 hybrid contribution 0.892 0.369 0.947 1.352 sum -19.982 -5.730 -24.903 32.438 Atomic orbital electron populations 1.21672 0.94489 1.02237 1.01894 1.21507 0.97216 0.92562 1.03709 1.22611 0.92282 0.95758 0.87128 0.92503 1.23468 0.95053 0.81360 1.07428 1.48098 1.43594 1.15930 1.23166 1.20052 0.80370 0.86989 0.83198 1.90747 1.61188 1.15805 1.73947 1.20220 0.80366 0.87806 0.83201 1.90524 1.59516 1.14942 1.75862 1.45944 1.49323 1.13167 1.25329 1.21574 0.97211 0.93884 0.87133 1.21523 0.98805 0.98151 0.95808 1.19451 0.95775 0.95700 0.93866 1.21477 1.31250 0.94826 1.09553 0.94819 1.26041 0.94336 1.03542 0.95549 1.70067 1.35070 1.37920 1.16258 0.85650 0.80325 0.79351 0.77280 1.19247 1.21252 1.16525 1.22242 0.95928 0.97858 0.84503 0.87904 1.21758 0.95367 1.02215 0.96389 1.21716 0.96292 1.01428 1.01182 1.23007 0.91336 0.83211 1.04457 1.87952 1.79725 1.23941 1.37918 0.92545 0.91611 0.92999 0.90523 0.89518 0.90071 0.84982 0.74565 0.90548 0.90801 0.91999 0.91847 0.95530 0.95783 0.92530 0.91186 0.88092 0.95336 0.91291 0.92964 0.84751 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 71.98 0.71 -0.99 16 2 C -0.11 -1.42 5.64 30.59 0.17 -1.25 16 3 C 0.08 1.26 2.78 30.69 0.09 1.34 16 4 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 5 C 0.05 0.89 5.02 86.35 0.43 1.33 16 6 N -0.57 -11.70 2.21 -795.87 -1.76 -13.46 16 7 C 0.51 12.90 7.46 87.27 0.65 13.55 16 8 O -0.54 -15.48 15.97 -3.24 -0.05 -15.53 16 9 C 0.50 13.52 7.74 87.27 0.68 14.20 16 10 O -0.53 -15.21 13.21 -3.24 -0.04 -15.25 16 11 N -0.69 -18.33 5.55 -464.42 -2.58 -20.91 16 12 C 0.12 3.64 5.67 86.38 0.49 4.13 16 13 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 14 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 15 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 16 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 17 C 0.00 0.11 5.47 84.65 0.46 0.58 16 18 N -0.95 -59.52 13.96 21.44 0.30 -59.22 16 19 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 23 C 0.10 1.55 2.62 44.83 0.12 1.67 16 24 H 0.10 1.84 7.06 -2.39 -0.02 1.82 16 25 C -0.12 -1.61 5.34 30.60 0.16 -1.44 16 26 C -0.15 -2.45 9.80 71.98 0.71 -1.75 16 27 C 0.06 0.73 6.33 71.94 0.46 1.19 16 28 O -0.38 -5.81 9.65 -148.98 -1.44 -7.25 16 29 H 0.06 0.72 7.83 -2.38 -0.02 0.70 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.45 7.55 -2.39 -0.02 1.43 16 35 H 0.13 2.87 4.49 -34.42 -0.15 2.72 16 36 H 0.42 10.50 7.96 -92.71 -0.74 9.76 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 42 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.07 1.02 7.15 -2.39 -0.02 1.00 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.03 0.59 7.49 -2.38 -0.02 0.57 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.01 396.03 1.95 -66.07 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -0.02 Total: 21.30 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.65 Total: -1.12 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -4.04 Total: -93.59 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.53 Total: -38.02 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -68.01 1.95 -66.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593929189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.116 kcal (2) G-P(sol) polarization free energy of solvation -68.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds