Wall clock time and date at job start Tue Mar 31 2020 15:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 H 1.09007 * 109.51033 * 55.10704 * 3 2 1 5 5 C 1.53296 * 109.51165 * 175.25131 * 3 2 1 6 6 N 1.47154 * 108.38201 * 172.22675 * 5 3 2 7 7 C 1.34780 * 120.98141 * 129.44382 * 6 5 3 8 8 O 1.21347 * 120.00069 * 186.28081 * 7 6 5 9 9 C 1.49454 * 119.99972 * 6.28229 * 7 6 5 10 10 O 1.21352 * 119.99886 * 6.10557 * 9 7 6 11 11 N 1.34774 * 120.00192 * 186.10124 * 9 7 6 12 12 C 1.46503 * 120.00028 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46902 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47437 * 299.99987 * 13 12 11 15 15 C 1.53001 * 109.47407 * 60.00489 * 13 12 11 16 16 C 1.50706 * 109.47082 * 180.02562 * 13 12 11 17 17 H 1.07998 * 119.99740 * 5.05401 * 16 13 12 18 18 C 1.37870 * 119.99971 * 185.05281 * 16 13 12 19 19 N 1.31513 * 119.99900 * 188.54077 * 18 16 13 20 20 Si 1.86805 * 120.00144 * 8.54448 * 18 16 13 21 21 H 1.48491 * 109.47225 * 88.12925 * 20 18 16 22 22 H 1.48504 * 109.47026 * 208.12992 * 20 18 16 23 23 H 1.48499 * 109.46969 * 328.12237 * 20 18 16 24 24 C 1.47149 * 118.03980 * 309.46982 * 6 5 3 25 25 H 1.09002 * 109.71389 * 290.79301 * 24 6 5 26 26 C 1.52997 * 109.68446 * 170.25796 * 24 6 5 27 27 C 1.53296 * 108.38606 * 50.53315 * 24 6 5 28 28 O 1.42960 * 109.51715 * 295.00520 * 3 2 1 29 29 H 1.08996 * 109.47271 * 59.99968 * 1 2 3 30 30 H 1.09002 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47179 * 299.99408 * 1 2 3 32 32 H 1.09007 * 109.47144 * 120.00520 * 2 1 3 33 33 H 1.09007 * 109.47312 * 239.99912 * 2 1 3 34 34 H 1.08992 * 109.68521 * 291.95046 * 5 3 2 35 35 H 1.08997 * 109.68226 * 52.51311 * 5 3 2 36 36 H 0.97001 * 119.99827 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.47308 * 300.00403 * 12 11 9 38 38 H 1.08992 * 109.46653 * 60.00625 * 12 11 9 39 39 H 1.09001 * 109.46891 * 68.55388 * 14 13 12 40 40 H 1.09001 * 109.47533 * 188.55548 * 14 13 12 41 41 H 1.08993 * 109.47061 * 308.56040 * 14 13 12 42 42 H 1.09001 * 109.47209 * 59.99657 * 15 13 12 43 43 H 1.09002 * 109.47339 * 180.02562 * 15 13 12 44 44 H 1.09010 * 109.46606 * 299.99433 * 15 13 12 45 45 H 0.97006 * 119.99925 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.47058 * 308.49213 * 26 24 6 47 47 H 1.09000 * 109.47603 * 68.49735 * 26 24 6 48 48 H 1.09007 * 109.47251 * 188.49724 * 26 24 6 49 49 H 1.08995 * 109.51448 * 187.77854 * 27 24 6 50 50 H 1.09005 * 109.51199 * 67.62173 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6072 1.9816 0.8428 5 6 3.5683 1.4451 0.1196 6 7 4.0462 2.8238 -0.0707 7 6 4.8946 3.3917 0.8093 8 8 5.1882 4.5639 0.6992 9 6 5.4739 2.5775 1.9208 10 8 5.2697 1.3822 1.9675 11 7 6.2231 3.1708 2.8711 12 6 6.7904 2.3728 3.9609 13 6 7.5908 3.2820 4.8955 14 6 8.7214 3.9512 4.1113 15 6 6.6681 4.3554 5.4764 16 6 8.1749 2.4611 6.0162 17 1 8.0627 1.3869 6.0140 18 6 8.8526 3.0813 7.0443 19 7 9.5050 2.3611 7.9305 20 14 8.8442 4.9445 7.1785 21 1 7.6664 5.3782 7.9720 22 1 10.0883 5.3980 7.8507 23 1 8.7714 5.5383 5.8193 24 6 3.5702 3.5644 -1.2497 25 1 3.9996 3.1322 -2.1535 26 6 3.9812 5.0337 -1.1359 27 6 2.0418 3.4585 -1.3026 28 8 1.6622 2.0826 -1.2212 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8599 1.0886 1.1074 35 1 3.9976 0.7989 -0.6460 36 1 6.3860 4.1263 2.8339 37 1 5.9850 1.8964 4.5198 38 1 7.4474 1.6079 3.5470 39 1 8.2994 4.6614 3.4002 40 1 9.3809 4.4769 4.8018 41 1 9.2891 3.1922 3.5733 42 1 5.8627 3.8787 6.0350 43 1 7.2384 5.0034 6.1419 44 1 6.2460 4.9492 4.6655 45 1 9.9821 2.7975 8.6536 46 1 3.6707 5.4238 -0.1665 47 1 5.0639 5.1167 -1.2311 48 1 3.5017 5.6077 -1.9289 49 1 1.6797 3.8812 -2.2397 50 1 1.6097 4.0055 -0.4645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593932689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:04 Heat of formation + Delta-G solvation = -76.498094 kcal Electronic energy + Delta-G solvation = -29574.134471 eV Core-core repulsion = 25603.392625 eV Total energy + Delta-G solvation = -3970.741846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25023 -39.46309 -38.41165 -36.99482 -35.33945 -34.47981 -33.39485 -32.05030 -31.55501 -28.60831 -26.80278 -26.60792 -26.42673 -25.14703 -24.04454 -23.72291 -21.82936 -21.18207 -19.92234 -19.12192 -17.68756 -16.97462 -16.80212 -16.30597 -16.19899 -15.94545 -15.45095 -15.26791 -14.95783 -14.81123 -14.69546 -14.02774 -13.91951 -13.64372 -13.39423 -13.12580 -13.01684 -12.97540 -12.66051 -12.53942 -12.28839 -12.16409 -12.09865 -12.06592 -11.55190 -11.43140 -11.33157 -11.24529 -10.92333 -10.55034 -10.52377 -10.41733 -10.32808 -10.21740 -10.12017 -9.16918 -8.98102 -8.78484 -8.73152 -8.69152 -8.56670 -6.18342 -4.18893 1.45404 2.25482 3.21606 3.23806 3.28724 3.36493 3.38199 3.52161 4.30934 4.31322 4.47499 4.51611 4.71700 4.76615 4.78625 4.87797 5.06209 5.12678 5.20544 5.28376 5.32412 5.36227 5.53977 5.57780 5.62363 5.73277 5.76777 5.83737 5.88153 5.92195 5.95878 5.98391 6.06033 6.27392 6.30502 6.34441 6.43670 6.51725 6.58523 6.61725 6.84252 6.87182 6.91946 7.11078 7.34083 7.39604 7.63973 7.79199 8.14685 8.38827 8.84078 9.43772 10.94517 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.002965 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.084527 B = 9441.506729 C =10309.508720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.062 0.938 5 C 0.042 3.958 6 N -0.586 5.586 7 C 0.510 3.490 8 O -0.514 6.514 9 C 0.497 3.503 10 O -0.523 6.523 11 N -0.682 5.682 12 C 0.137 3.863 13 C 0.028 3.972 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.513 4.513 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.893 5.893 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.246 1.246 24 C 0.105 3.895 25 H 0.083 0.917 26 C -0.140 4.140 27 C 0.054 3.946 28 O -0.377 6.377 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.050 0.950 49 H 0.106 0.894 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 1.466 -18.495 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.080 0.920 5 C -0.080 4.080 6 N -0.321 5.321 7 C 0.294 3.706 8 O -0.390 6.390 9 C 0.278 3.722 10 O -0.402 6.402 11 N -0.334 5.334 12 C 0.016 3.984 13 C 0.027 3.973 14 C -0.204 4.204 15 C -0.207 4.207 16 C -0.551 4.551 17 H 0.096 0.904 18 C -0.128 4.128 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.172 1.172 24 C 0.003 3.997 25 H 0.101 0.899 26 C -0.197 4.197 27 C -0.024 4.024 28 O -0.296 6.296 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.124 0.876 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.516 1.149 -18.465 24.146 hybrid contribution 0.285 1.561 0.340 1.622 sum -15.231 2.709 -18.125 23.830 Atomic orbital electron populations 1.21701 0.95037 1.01657 1.02195 1.21496 0.96805 0.93508 1.03383 1.22651 0.93600 0.94853 0.87119 0.91999 1.23642 0.93921 0.81638 1.08786 1.48015 1.44776 1.15499 1.23820 1.20358 0.79806 0.87281 0.83186 1.90798 1.59624 1.15357 1.73236 1.20095 0.80890 0.87782 0.83460 1.90451 1.58961 1.14920 1.75905 1.46240 1.48625 1.13618 1.24873 1.21763 0.97141 0.93896 0.85643 1.18748 0.91731 0.92909 0.93926 1.22354 0.99786 0.99186 0.99104 1.22379 0.99948 0.98883 0.99476 1.20698 1.34913 0.94887 1.04565 0.90389 1.24977 0.94142 0.98156 0.95479 1.69906 1.31890 1.35837 1.15364 0.87256 0.75763 0.86748 0.78297 1.21423 1.23369 1.17229 1.22129 0.95276 0.94432 0.87913 0.89915 1.22168 1.03006 0.92197 1.02330 1.23049 0.92877 0.83457 1.02992 1.87940 1.79708 1.23442 1.38465 0.92070 0.92572 0.92893 0.89852 0.90835 0.82982 0.90571 0.75329 0.91102 0.91071 0.95715 0.92220 0.93304 0.92598 0.93899 0.94949 0.92474 0.90560 0.90635 0.93142 0.87629 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.77 16 2 C -0.11 -0.95 5.64 -26.74 -0.15 -1.10 16 3 C 0.08 0.75 2.78 -26.58 -0.07 0.68 16 4 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 5 C 0.04 0.47 5.48 -3.53 -0.02 0.45 16 6 N -0.59 -7.15 3.02 -165.25 -0.50 -7.65 16 7 C 0.51 7.29 7.66 -11.58 -0.09 7.20 16 8 O -0.51 -7.79 12.05 5.50 0.07 -7.73 16 9 C 0.50 7.83 7.77 -11.58 -0.09 7.74 16 10 O -0.52 -8.80 13.15 5.50 0.07 -8.73 16 11 N -0.68 -11.16 4.99 -60.73 -0.30 -11.47 16 12 C 0.14 2.59 4.50 -4.04 -0.02 2.57 16 13 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 14 C -0.15 -2.96 7.54 37.16 0.28 -2.68 16 15 C -0.15 -3.01 7.48 37.16 0.28 -2.73 16 16 C -0.51 -13.38 8.62 -34.44 -0.30 -13.68 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.08 2.05 5.39 -17.82 -0.10 1.96 16 19 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 20 Si 0.89 20.89 22.75 -169.99 -3.87 17.02 16 21 H -0.29 -6.73 7.10 56.52 0.40 -6.33 16 22 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.25 -5.30 4.52 56.52 0.26 -5.04 16 24 C 0.11 1.06 3.68 -67.42 -0.25 0.81 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.14 -1.42 7.63 37.16 0.28 -1.14 16 27 C 0.05 0.47 6.28 37.31 0.23 0.71 16 28 O -0.38 -3.86 9.92 -35.23 -0.35 -4.21 16 29 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.15 1.97 4.37 -54.64 -0.24 1.73 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.41 6.44 5.73 -40.82 -0.23 6.21 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.02 0.43 7.11 -51.93 -0.37 0.06 16 40 H 0.06 1.28 4.32 -51.93 -0.22 1.05 16 41 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.91 2.13 -51.93 -0.11 0.80 16 44 H 0.03 0.55 6.86 -51.92 -0.36 0.20 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 0.90 6.64 -51.93 -0.34 0.56 16 47 H 0.07 0.89 6.93 -51.93 -0.36 0.53 16 48 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 49 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -29.18 371.52 -6.49 -35.68 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.26 Total: 6.51 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.28 Total: 0.54 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.03 Total: -44.68 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.21 Total: -20.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.87 Total: 17.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.18 -6.49 -35.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.822 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds