Wall clock time and date at job start Tue Mar 31 2020 15:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 H 1.09007 * 109.51033 * 55.10704 * 3 2 1 5 5 C 1.53296 * 109.51165 * 175.25131 * 3 2 1 6 6 N 1.47154 * 108.38201 * 172.22675 * 5 3 2 7 7 C 1.34780 * 120.98141 * 129.44382 * 6 5 3 8 8 O 1.21347 * 120.00069 * 186.28081 * 7 6 5 9 9 C 1.49454 * 119.99972 * 6.28229 * 7 6 5 10 10 O 1.21352 * 119.99886 * 6.10557 * 9 7 6 11 11 N 1.34774 * 120.00192 * 186.10124 * 9 7 6 12 12 C 1.46503 * 120.00028 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46902 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47437 * 299.99987 * 13 12 11 15 15 C 1.53001 * 109.47407 * 60.00489 * 13 12 11 16 16 C 1.50706 * 109.47082 * 180.02562 * 13 12 11 17 17 H 1.07998 * 119.99740 * 5.05401 * 16 13 12 18 18 C 1.37870 * 119.99971 * 185.05281 * 16 13 12 19 19 N 1.31513 * 119.99900 * 188.54077 * 18 16 13 20 20 Si 1.86805 * 120.00144 * 8.54448 * 18 16 13 21 21 H 1.48491 * 109.47225 * 88.12925 * 20 18 16 22 22 H 1.48504 * 109.47026 * 208.12992 * 20 18 16 23 23 H 1.48499 * 109.46969 * 328.12237 * 20 18 16 24 24 C 1.47149 * 118.03980 * 309.46982 * 6 5 3 25 25 H 1.09002 * 109.71389 * 290.79301 * 24 6 5 26 26 C 1.52997 * 109.68446 * 170.25796 * 24 6 5 27 27 C 1.53296 * 108.38606 * 50.53315 * 24 6 5 28 28 O 1.42960 * 109.51715 * 295.00520 * 3 2 1 29 29 H 1.08996 * 109.47271 * 59.99968 * 1 2 3 30 30 H 1.09002 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47179 * 299.99408 * 1 2 3 32 32 H 1.09007 * 109.47144 * 120.00520 * 2 1 3 33 33 H 1.09007 * 109.47312 * 239.99912 * 2 1 3 34 34 H 1.08992 * 109.68521 * 291.95046 * 5 3 2 35 35 H 1.08997 * 109.68226 * 52.51311 * 5 3 2 36 36 H 0.97001 * 119.99827 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.47308 * 300.00403 * 12 11 9 38 38 H 1.08992 * 109.46653 * 60.00625 * 12 11 9 39 39 H 1.09001 * 109.46891 * 68.55388 * 14 13 12 40 40 H 1.09001 * 109.47533 * 188.55548 * 14 13 12 41 41 H 1.08993 * 109.47061 * 308.56040 * 14 13 12 42 42 H 1.09001 * 109.47209 * 59.99657 * 15 13 12 43 43 H 1.09002 * 109.47339 * 180.02562 * 15 13 12 44 44 H 1.09010 * 109.46606 * 299.99433 * 15 13 12 45 45 H 0.97006 * 119.99925 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.47058 * 308.49213 * 26 24 6 47 47 H 1.09000 * 109.47603 * 68.49735 * 26 24 6 48 48 H 1.09007 * 109.47251 * 188.49724 * 26 24 6 49 49 H 1.08995 * 109.51448 * 187.77854 * 27 24 6 50 50 H 1.09005 * 109.51199 * 67.62173 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6072 1.9816 0.8428 5 6 3.5683 1.4451 0.1196 6 7 4.0462 2.8238 -0.0707 7 6 4.8946 3.3917 0.8093 8 8 5.1882 4.5639 0.6992 9 6 5.4739 2.5775 1.9208 10 8 5.2697 1.3822 1.9675 11 7 6.2231 3.1708 2.8711 12 6 6.7904 2.3728 3.9609 13 6 7.5908 3.2820 4.8955 14 6 8.7214 3.9512 4.1113 15 6 6.6681 4.3554 5.4764 16 6 8.1749 2.4611 6.0162 17 1 8.0627 1.3869 6.0140 18 6 8.8526 3.0813 7.0443 19 7 9.5050 2.3611 7.9305 20 14 8.8442 4.9445 7.1785 21 1 7.6664 5.3782 7.9720 22 1 10.0883 5.3980 7.8507 23 1 8.7714 5.5383 5.8193 24 6 3.5702 3.5644 -1.2497 25 1 3.9996 3.1322 -2.1535 26 6 3.9812 5.0337 -1.1359 27 6 2.0418 3.4585 -1.3026 28 8 1.6622 2.0826 -1.2212 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8599 1.0886 1.1074 35 1 3.9976 0.7989 -0.6460 36 1 6.3860 4.1263 2.8339 37 1 5.9850 1.8964 4.5198 38 1 7.4474 1.6079 3.5470 39 1 8.2994 4.6614 3.4002 40 1 9.3809 4.4769 4.8018 41 1 9.2891 3.1922 3.5733 42 1 5.8627 3.8787 6.0350 43 1 7.2384 5.0034 6.1419 44 1 6.2460 4.9492 4.6655 45 1 9.9821 2.7975 8.6536 46 1 3.6707 5.4238 -0.1665 47 1 5.0639 5.1167 -1.2311 48 1 3.5017 5.6077 -1.9289 49 1 1.6797 3.8812 -2.2397 50 1 1.6097 4.0055 -0.4645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593932689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:03 Heat of formation + Delta-G solvation = -96.969120 kcal Electronic energy + Delta-G solvation = -29575.022162 eV Core-core repulsion = 25603.392625 eV Total energy + Delta-G solvation = -3971.629536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31528 -40.57070 -39.46939 -38.56328 -36.31481 -35.32816 -34.88021 -33.45499 -32.84373 -29.49625 -28.23840 -28.01102 -27.37021 -27.06674 -25.28186 -24.50702 -22.83132 -21.98665 -21.23601 -20.67556 -18.87585 -18.09903 -17.80339 -17.76337 -17.38589 -17.28609 -16.80596 -16.37339 -16.16640 -15.86717 -15.73525 -15.20757 -15.01139 -14.82322 -14.54295 -14.45217 -14.36051 -14.17241 -14.01022 -13.83749 -13.80923 -13.30480 -13.16719 -12.92769 -12.76970 -12.39668 -12.28961 -12.19225 -12.07941 -11.97493 -11.90159 -11.80330 -11.72869 -11.55318 -11.22223 -11.04143 -10.68900 -10.41854 -10.24101 -9.99755 -9.64992 -8.29909 -6.33893 0.27300 1.17321 1.35720 1.38005 1.49654 2.04855 2.32894 2.33553 2.70544 3.06841 3.23947 3.56174 3.75691 3.93593 3.97977 3.99152 4.01519 4.14931 4.27424 4.34390 4.36786 4.48731 4.55298 4.58605 4.66345 4.67069 4.75127 4.79834 4.81205 4.83567 4.89541 4.94297 5.01928 5.04315 5.07584 5.13887 5.14500 5.22709 5.32953 5.44403 5.44899 5.48093 5.67330 5.73208 5.88119 6.11410 6.16595 6.28820 6.64279 6.72341 6.90554 7.32449 8.86786 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.002965 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.084527 B = 9441.506729 C =10309.508720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.081 3.919 4 H 0.057 0.943 5 C 0.043 3.957 6 N -0.583 5.583 7 C 0.513 3.487 8 O -0.524 6.524 9 C 0.497 3.503 10 O -0.536 6.536 11 N -0.679 5.679 12 C 0.153 3.847 13 C 0.026 3.974 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.511 4.511 17 H 0.036 0.964 18 C 0.018 3.982 19 N -0.947 5.947 20 Si 0.941 3.059 21 H -0.283 1.283 22 H -0.317 1.317 23 H -0.207 1.207 24 C 0.102 3.898 25 H 0.093 0.907 26 C -0.132 4.132 27 C 0.055 3.945 28 O -0.383 6.383 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.067 0.933 45 H 0.264 0.736 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.134 0.866 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 3.397 -21.072 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.022 3.978 4 H 0.075 0.925 5 C -0.079 4.079 6 N -0.316 5.316 7 C 0.295 3.705 8 O -0.401 6.401 9 C 0.278 3.722 10 O -0.416 6.416 11 N -0.331 5.331 12 C 0.030 3.970 13 C 0.025 3.975 14 C -0.203 4.203 15 C -0.206 4.206 16 C -0.550 4.550 17 H 0.055 0.945 18 C -0.179 4.179 19 N -0.587 5.587 20 Si 0.772 3.228 21 H -0.210 1.210 22 H -0.246 1.246 23 H -0.130 1.130 24 C 0.000 4.000 25 H 0.111 0.889 26 C -0.189 4.189 27 C -0.022 4.022 28 O -0.301 6.301 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.152 0.848 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.358 3.080 -21.099 27.495 hybrid contribution 0.791 0.813 1.062 1.554 sum -16.567 3.894 -20.037 26.289 Atomic orbital electron populations 1.21672 0.94380 1.02301 1.01908 1.21517 0.97332 0.92546 1.03717 1.22611 0.92325 0.95756 0.87060 0.92485 1.23598 0.95091 0.81270 1.07934 1.48135 1.43769 1.15893 1.23849 1.19999 0.80379 0.86951 0.83161 1.90809 1.60295 1.15452 1.73520 1.20465 0.80351 0.87780 0.83569 1.90476 1.59159 1.15686 1.76253 1.46005 1.48993 1.13575 1.24536 1.21322 0.96402 0.93341 0.85944 1.18680 0.92700 0.93176 0.92917 1.22279 0.99039 0.99692 0.99297 1.22322 0.99439 0.98468 1.00418 1.21002 1.34212 0.93715 1.06042 0.94531 1.25803 0.93896 1.03067 0.95159 1.70064 1.33915 1.38037 1.16657 0.86368 0.75135 0.81223 0.80113 1.21037 1.24631 1.13048 1.22363 0.96315 0.94234 0.87095 0.88902 1.22041 1.02020 0.92442 1.02437 1.23188 0.91701 0.82879 1.04478 1.87945 1.79638 1.24199 1.38359 0.92523 0.91508 0.92961 0.89545 0.90511 0.84576 0.90099 0.74628 0.92035 0.92411 0.92340 0.93327 0.93556 0.92868 0.94741 0.91386 0.92662 0.92249 0.92404 0.90270 0.84800 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.81 71.98 0.71 -1.27 16 2 C -0.11 -1.71 5.64 30.59 0.17 -1.54 16 3 C 0.08 1.47 2.78 30.69 0.09 1.56 16 4 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 5 C 0.04 0.91 5.48 86.35 0.47 1.38 16 6 N -0.58 -13.20 3.02 -795.10 -2.40 -15.60 16 7 C 0.51 13.84 7.66 87.27 0.67 14.51 16 8 O -0.52 -14.87 12.05 -3.24 -0.04 -14.91 16 9 C 0.50 15.10 7.77 87.27 0.68 15.78 16 10 O -0.54 -17.81 13.15 -3.25 -0.04 -17.85 16 11 N -0.68 -21.11 4.99 -464.42 -2.32 -23.43 16 12 C 0.15 5.70 4.50 86.38 0.39 6.09 16 13 C 0.03 1.09 0.50 -52.93 -0.03 1.07 16 14 C -0.15 -5.54 7.54 71.98 0.54 -4.99 16 15 C -0.15 -5.61 7.48 71.98 0.54 -5.08 16 16 C -0.51 -27.34 8.62 25.60 0.22 -27.12 16 17 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 18 C 0.02 1.01 5.39 84.65 0.46 1.47 16 19 N -0.95 -57.97 13.96 21.44 0.30 -57.67 16 20 Si 0.94 42.64 22.75 68.60 1.56 44.21 16 21 H -0.28 -12.57 7.10 99.48 0.71 -11.87 16 22 H -0.32 -14.87 7.11 99.48 0.71 -14.16 16 23 H -0.21 -8.03 4.52 99.48 0.45 -7.58 16 24 C 0.10 1.79 3.68 44.97 0.17 1.95 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 C -0.13 -2.36 7.63 71.98 0.55 -1.81 16 27 C 0.05 0.80 6.28 72.08 0.45 1.25 16 28 O -0.38 -6.89 9.92 -148.98 -1.48 -8.37 16 29 H 0.06 0.82 7.82 -2.39 -0.02 0.80 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.14 3.44 4.37 -45.27 -0.20 3.24 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.42 11.89 5.73 -92.71 -0.53 11.36 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 1.83 7.11 -2.39 -0.02 1.81 16 40 H 0.05 1.95 4.32 -2.39 -0.01 1.94 16 41 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.03 1.36 2.13 -2.39 -0.01 1.35 16 44 H 0.07 2.06 6.86 -2.38 -0.02 2.05 16 45 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 46 H 0.06 1.28 6.64 -2.38 -0.02 1.26 16 47 H 0.06 1.25 6.93 -2.39 -0.02 1.23 16 48 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -64.60 371.52 1.62 -62.98 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.03 Total: 27.41 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.07 Total: 3.25 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -4.42 Total: -96.71 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.56 Total: -41.13 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.56 Total: 44.21 kcal Total: -64.60 1.62 -62.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593932689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.993 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds