Wall clock time and date at job start Tue Mar 31 2020 15:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47350 * 2 1 4 4 H 1.09005 * 109.46953 * 304.81395 * 3 2 1 5 5 C 1.52994 * 109.47352 * 184.81404 * 3 2 1 6 6 C 1.53003 * 109.47457 * 64.81065 * 3 2 1 7 7 H 1.09007 * 109.47057 * 306.04845 * 6 3 2 8 8 N 1.46495 * 109.47569 * 186.04133 * 6 3 2 9 9 C 1.34779 * 119.99753 * 86.57692 * 8 6 3 10 10 O 1.21586 * 119.99786 * 355.06453 * 9 8 6 11 11 N 1.34774 * 120.00129 * 175.06352 * 9 8 6 12 12 C 1.47031 * 125.64463 * 359.69297 * 11 9 8 13 13 C 1.54316 * 107.27049 * 180.96706 * 12 11 9 14 14 C 1.55154 * 102.86474 * 22.52848 * 13 12 11 15 15 C 1.47419 * 125.65044 * 180.02562 * 11 9 8 16 16 C 1.50702 * 109.46593 * 66.04360 * 6 3 2 17 17 O 1.20821 * 120.00110 * 120.00779 * 16 6 3 18 18 O 1.34237 * 120.00215 * 299.99731 * 16 6 3 19 19 C 1.45197 * 117.00177 * 180.02562 * 18 16 6 20 20 C 1.52992 * 109.47066 * 180.02562 * 19 18 16 21 21 C 1.50705 * 109.47001 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99753 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00129 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00324 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46889 * 90.00166 * 25 23 21 27 27 H 1.48504 * 109.47469 * 209.99979 * 25 23 21 28 28 H 1.48491 * 109.47463 * 330.00351 * 25 23 21 29 29 H 1.09008 * 109.47384 * 182.49901 * 1 2 3 30 30 H 1.09004 * 109.46960 * 302.48991 * 1 2 3 31 31 H 1.08996 * 109.47080 * 62.49707 * 1 2 3 32 32 H 1.09004 * 109.46944 * 239.99648 * 2 1 3 33 33 H 1.09009 * 109.47150 * 119.99888 * 2 1 3 34 34 H 1.09001 * 109.47444 * 300.00221 * 5 3 2 35 35 H 1.09000 * 109.47330 * 59.99656 * 5 3 2 36 36 H 1.09006 * 109.47767 * 179.97438 * 5 3 2 37 37 H 0.96999 * 120.00248 * 266.31015 * 8 6 3 38 38 H 1.08996 * 109.88148 * 300.51506 * 12 11 9 39 39 H 1.09000 * 109.87859 * 61.68084 * 12 11 9 40 40 H 1.08997 * 110.92149 * 264.10896 * 13 12 11 41 41 H 1.09001 * 110.58759 * 140.78972 * 13 12 11 42 42 H 1.09000 * 110.99941 * 206.22908 * 14 13 12 43 43 H 1.09001 * 111.00606 * 82.37987 * 14 13 12 44 44 H 1.09000 * 110.36914 * 274.67382 * 15 11 9 45 45 H 1.09000 * 110.36702 * 36.88783 * 15 11 9 46 46 H 1.09003 * 109.47194 * 300.00354 * 19 18 16 47 47 H 1.09003 * 109.46853 * 60.00375 * 19 18 16 48 48 H 1.09003 * 109.47032 * 299.99999 * 20 19 18 49 49 H 1.08994 * 109.47548 * 60.00198 * 20 19 18 50 50 H 0.96998 * 120.00289 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6079 1.9805 -0.8438 5 6 3.5651 1.4441 -0.1211 6 6 1.6312 2.1280 1.3053 7 1 0.5543 2.0325 1.4441 8 7 1.9921 3.5465 1.2458 9 6 1.1405 4.4361 0.6982 10 8 0.1136 4.0509 0.1733 11 7 1.4271 5.7526 0.7324 12 6 2.6248 6.3533 1.3378 13 6 2.5109 7.8818 1.1591 14 6 0.9853 8.0953 0.9743 15 6 0.5885 6.8293 0.1751 16 6 2.3463 1.4758 2.4605 17 8 3.0818 2.1289 3.1621 18 8 2.1660 0.1692 2.7101 19 6 2.8862 -0.3917 3.8392 20 6 2.5576 -1.8807 3.9649 21 6 3.3046 -2.4627 5.1372 22 1 3.9496 -1.8337 5.7327 23 6 3.1646 -3.7983 5.4494 24 7 3.8161 -4.3063 6.4727 25 14 2.0485 -4.8862 4.4198 26 1 2.8292 -5.4838 3.3068 27 1 1.4906 -5.9686 5.2699 28 1 0.9384 -4.0715 3.8640 29 1 -0.3634 -1.0267 0.0448 30 1 -0.3633 0.5520 0.8669 31 1 -0.3633 0.4746 -0.9115 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.9972 0.9059 0.7226 35 1 3.8564 0.9557 -1.0510 36 1 3.9286 2.4718 -0.1215 37 1 2.8423 3.8461 1.6040 38 1 2.6688 6.1043 2.3980 39 1 3.5186 5.9884 0.8318 40 1 3.0565 8.2121 0.2752 41 1 2.8678 8.3995 2.0495 42 1 0.7842 8.9994 0.3995 43 1 0.4755 8.1249 1.9373 44 1 0.8029 6.9672 -0.8847 45 1 -0.4675 6.6019 0.3213 46 1 3.9581 -0.2684 3.6841 47 1 2.5894 0.1245 4.7522 48 1 1.4857 -2.0043 4.1199 49 1 2.8546 -2.3967 3.0519 50 1 3.7179 -5.2460 6.6921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736833584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:34 Heat of formation + Delta-G solvation = -129.601500 kcal Electronic energy + Delta-G solvation = -29163.002916 eV Core-core repulsion = 25189.958334 eV Total energy + Delta-G solvation = -3973.044582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04694 -40.05241 -38.04446 -36.70991 -36.35453 -33.91011 -33.31843 -31.82560 -30.82969 -30.10345 -29.36608 -27.63778 -25.20301 -23.96376 -23.40494 -21.88372 -21.56484 -20.68973 -20.45894 -19.42768 -18.74974 -17.37907 -16.98620 -16.65652 -16.55140 -16.31414 -15.67624 -15.04276 -14.71469 -14.53159 -14.23529 -14.01115 -13.84267 -13.70002 -13.53450 -13.34501 -13.19203 -12.93049 -12.71186 -12.68182 -12.31246 -11.92816 -11.78255 -11.64694 -11.61986 -11.59112 -11.37744 -11.19756 -11.00483 -10.80070 -10.73211 -10.59331 -10.48608 -10.35114 -10.03066 -9.91679 -9.74165 -9.39113 -9.31863 -8.82514 -8.64656 -6.15289 -4.16825 2.13236 2.32365 2.89348 3.08312 3.26479 3.34336 3.38485 3.69719 4.14638 4.21735 4.36605 4.47728 4.62071 4.75266 4.84395 4.88657 4.94984 4.96124 5.17686 5.18365 5.27999 5.30308 5.41753 5.43490 5.49319 5.50706 5.54297 5.65663 5.71799 5.73576 5.84593 5.89550 5.90862 5.91702 5.98927 6.14256 6.17862 6.20490 6.37077 6.40056 6.55850 6.73205 6.76246 7.12152 7.18219 7.59094 7.68611 7.96149 8.34898 8.36667 8.85998 9.44158 10.97199 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002740 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.438115 B =10217.578777 C =10973.203863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.152 4.152 6 C 0.173 3.827 7 H 0.127 0.873 8 N -0.727 5.727 9 C 0.728 3.272 10 O -0.585 6.585 11 N -0.637 5.637 12 C 0.095 3.905 13 C -0.129 4.129 14 C -0.135 4.135 15 C 0.125 3.875 16 C 0.459 3.541 17 O -0.513 6.513 18 O -0.346 6.346 19 C 0.079 3.921 20 C -0.008 4.008 21 C -0.528 4.528 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.897 5.897 25 Si 0.880 3.120 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.262 1.262 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.029 0.971 49 H 0.024 0.976 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 22.948 -15.543 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.113 4.113 4 H 0.108 0.892 5 C -0.209 4.209 6 C 0.066 3.934 7 H 0.144 0.856 8 N -0.385 5.385 9 C 0.430 3.570 10 O -0.462 6.462 11 N -0.376 5.376 12 C -0.028 4.028 13 C -0.167 4.167 14 C -0.173 4.173 15 C 0.002 3.998 16 C 0.301 3.699 17 O -0.402 6.402 18 O -0.262 6.262 19 C 0.007 3.993 20 C -0.046 4.046 21 C -0.566 4.566 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.535 5.535 25 Si 0.707 3.293 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.186 1.186 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.450 22.546 -15.557 27.751 hybrid contribution 0.164 -0.451 0.004 0.480 sum -4.287 22.095 -15.553 27.357 Atomic orbital electron populations 1.21766 0.95593 1.01715 1.01568 1.21836 0.96432 0.94792 1.04114 1.21510 0.96677 0.97275 0.95867 0.89227 1.21899 0.94734 1.01696 1.02553 1.20461 1.01295 0.79583 0.92071 0.85607 1.44806 1.22226 1.05958 1.65464 1.15235 0.82974 0.79417 0.79362 1.90941 1.26748 1.77932 1.50618 1.47533 1.24220 1.04023 1.61813 1.22059 0.88092 0.94061 0.98617 1.22601 0.96817 0.94205 1.03097 1.22811 0.95814 0.97468 1.01206 1.22075 0.95800 0.84821 0.97120 1.23371 0.79844 0.82050 0.84624 1.90625 1.36357 1.64437 1.48747 1.86539 1.66136 1.23262 1.50257 1.23464 0.95185 0.96204 0.84449 1.19625 0.98309 0.88502 0.98149 1.20824 1.28153 0.95331 1.12263 0.90701 1.24933 0.95340 0.97795 0.94911 1.69893 1.42062 1.13999 1.27501 0.86765 0.81723 0.80405 0.80425 1.20033 1.21184 1.18642 0.92512 0.92677 0.93035 0.91501 0.88725 0.92438 0.91784 0.92759 0.75840 0.91193 0.91504 0.90383 0.89826 0.89610 0.90440 0.91618 0.90247 0.91621 0.91620 0.95295 0.95729 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.73 37.16 0.36 -1.46 16 2 C -0.13 -1.68 5.21 -26.74 -0.14 -1.82 16 3 C -0.09 -1.14 2.35 -90.63 -0.21 -1.36 16 4 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.15 -1.75 8.75 37.15 0.33 -1.42 16 6 C 0.17 2.36 2.15 -69.08 -0.15 2.21 16 7 H 0.13 1.80 5.71 -51.93 -0.30 1.51 16 8 N -0.73 -9.08 4.38 -59.81 -0.26 -9.34 16 9 C 0.73 9.57 8.46 -86.92 -0.74 8.84 16 10 O -0.58 -9.48 16.28 5.29 0.09 -9.39 16 11 N -0.64 -6.40 3.33 -176.25 -0.59 -6.98 16 12 C 0.09 0.68 6.15 -3.06 -0.02 0.67 16 13 C -0.13 -0.62 6.95 -24.90 -0.17 -0.80 16 14 C -0.13 -0.69 7.08 -24.59 -0.17 -0.87 16 15 C 0.12 1.00 6.91 -2.54 -0.02 0.98 16 16 C 0.46 7.45 5.76 36.01 0.21 7.65 16 17 O -0.51 -9.19 15.60 -18.75 -0.29 -9.48 16 18 O -0.35 -6.16 7.35 -39.28 -0.29 -6.45 16 19 C 0.08 1.63 5.40 37.15 0.20 1.83 16 20 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 21 C -0.53 -14.73 9.66 -34.44 -0.33 -15.06 16 22 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 23 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 24 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 25 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.05 0.70 6.33 -51.93 -0.33 0.37 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.38 5.24 -51.92 -0.27 1.11 16 34 H 0.06 0.76 7.05 -51.93 -0.37 0.39 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 37 H 0.41 4.70 6.83 -40.82 -0.28 4.43 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 47 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 48 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 49 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 50 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -32.53 395.58 -8.99 -41.52 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.63 Total: 2.95 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.08 Total: 1.03 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.07 Total: -42.65 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.50 Total: -25.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.53 -8.99 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.078 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds