Wall clock time and date at job start Tue Mar 31 2020 15:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47350 * 2 1 4 4 H 1.09005 * 109.46953 * 304.81395 * 3 2 1 5 5 C 1.52994 * 109.47352 * 184.81404 * 3 2 1 6 6 C 1.53003 * 109.47457 * 64.81065 * 3 2 1 7 7 H 1.09007 * 109.47057 * 306.04845 * 6 3 2 8 8 N 1.46495 * 109.47569 * 186.04133 * 6 3 2 9 9 C 1.34779 * 119.99753 * 86.57692 * 8 6 3 10 10 O 1.21586 * 119.99786 * 355.06453 * 9 8 6 11 11 N 1.34774 * 120.00129 * 175.06352 * 9 8 6 12 12 C 1.47031 * 125.64463 * 359.69297 * 11 9 8 13 13 C 1.54316 * 107.27049 * 180.96706 * 12 11 9 14 14 C 1.55154 * 102.86474 * 22.52848 * 13 12 11 15 15 C 1.47419 * 125.65044 * 180.02562 * 11 9 8 16 16 C 1.50702 * 109.46593 * 66.04360 * 6 3 2 17 17 O 1.20821 * 120.00110 * 120.00779 * 16 6 3 18 18 O 1.34237 * 120.00215 * 299.99731 * 16 6 3 19 19 C 1.45197 * 117.00177 * 180.02562 * 18 16 6 20 20 C 1.52992 * 109.47066 * 180.02562 * 19 18 16 21 21 C 1.50705 * 109.47001 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99753 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00129 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00324 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46889 * 90.00166 * 25 23 21 27 27 H 1.48504 * 109.47469 * 209.99979 * 25 23 21 28 28 H 1.48491 * 109.47463 * 330.00351 * 25 23 21 29 29 H 1.09008 * 109.47384 * 182.49901 * 1 2 3 30 30 H 1.09004 * 109.46960 * 302.48991 * 1 2 3 31 31 H 1.08996 * 109.47080 * 62.49707 * 1 2 3 32 32 H 1.09004 * 109.46944 * 239.99648 * 2 1 3 33 33 H 1.09009 * 109.47150 * 119.99888 * 2 1 3 34 34 H 1.09001 * 109.47444 * 300.00221 * 5 3 2 35 35 H 1.09000 * 109.47330 * 59.99656 * 5 3 2 36 36 H 1.09006 * 109.47767 * 179.97438 * 5 3 2 37 37 H 0.96999 * 120.00248 * 266.31015 * 8 6 3 38 38 H 1.08996 * 109.88148 * 300.51506 * 12 11 9 39 39 H 1.09000 * 109.87859 * 61.68084 * 12 11 9 40 40 H 1.08997 * 110.92149 * 264.10896 * 13 12 11 41 41 H 1.09001 * 110.58759 * 140.78972 * 13 12 11 42 42 H 1.09000 * 110.99941 * 206.22908 * 14 13 12 43 43 H 1.09001 * 111.00606 * 82.37987 * 14 13 12 44 44 H 1.09000 * 110.36914 * 274.67382 * 15 11 9 45 45 H 1.09000 * 110.36702 * 36.88783 * 15 11 9 46 46 H 1.09003 * 109.47194 * 300.00354 * 19 18 16 47 47 H 1.09003 * 109.46853 * 60.00375 * 19 18 16 48 48 H 1.09003 * 109.47032 * 299.99999 * 20 19 18 49 49 H 1.08994 * 109.47548 * 60.00198 * 20 19 18 50 50 H 0.96998 * 120.00289 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6079 1.9805 -0.8438 5 6 3.5651 1.4441 -0.1211 6 6 1.6312 2.1280 1.3053 7 1 0.5543 2.0325 1.4441 8 7 1.9921 3.5465 1.2458 9 6 1.1405 4.4361 0.6982 10 8 0.1136 4.0509 0.1733 11 7 1.4271 5.7526 0.7324 12 6 2.6248 6.3533 1.3378 13 6 2.5109 7.8818 1.1591 14 6 0.9853 8.0953 0.9743 15 6 0.5885 6.8293 0.1751 16 6 2.3463 1.4758 2.4605 17 8 3.0818 2.1289 3.1621 18 8 2.1660 0.1692 2.7101 19 6 2.8862 -0.3917 3.8392 20 6 2.5576 -1.8807 3.9649 21 6 3.3046 -2.4627 5.1372 22 1 3.9496 -1.8337 5.7327 23 6 3.1646 -3.7983 5.4494 24 7 3.8161 -4.3063 6.4727 25 14 2.0485 -4.8862 4.4198 26 1 2.8292 -5.4838 3.3068 27 1 1.4906 -5.9686 5.2699 28 1 0.9384 -4.0715 3.8640 29 1 -0.3634 -1.0267 0.0448 30 1 -0.3633 0.5520 0.8669 31 1 -0.3633 0.4746 -0.9115 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.9972 0.9059 0.7226 35 1 3.8564 0.9557 -1.0510 36 1 3.9286 2.4718 -0.1215 37 1 2.8423 3.8461 1.6040 38 1 2.6688 6.1043 2.3980 39 1 3.5186 5.9884 0.8318 40 1 3.0565 8.2121 0.2752 41 1 2.8678 8.3995 2.0495 42 1 0.7842 8.9994 0.3995 43 1 0.4755 8.1249 1.9373 44 1 0.8029 6.9672 -0.8847 45 1 -0.4675 6.6019 0.3213 46 1 3.9581 -0.2684 3.6841 47 1 2.5894 0.1245 4.7522 48 1 1.4857 -2.0043 4.1199 49 1 2.8546 -2.3967 3.0519 50 1 3.7179 -5.2460 6.6921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736833584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:33 Heat of formation + Delta-G solvation = -148.525144 kcal Electronic energy + Delta-G solvation = -29163.823507 eV Core-core repulsion = 25189.958334 eV Total energy + Delta-G solvation = -3973.865173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24241 -41.11931 -38.92055 -37.91112 -37.62265 -35.41167 -34.91171 -32.80983 -32.52953 -31.03848 -29.96939 -28.80950 -26.98942 -24.80932 -24.38316 -23.20925 -22.43659 -22.07607 -21.48662 -20.52181 -19.66328 -19.14076 -18.26744 -17.99838 -17.72067 -17.30459 -16.85244 -16.29104 -16.13483 -15.75815 -15.59580 -15.03298 -14.89245 -14.76160 -14.54477 -14.47198 -14.14492 -14.11783 -13.91051 -13.62625 -13.32468 -13.31177 -13.12995 -12.86439 -12.64907 -12.51302 -12.42210 -12.21723 -12.15105 -12.04443 -11.87552 -11.73905 -11.65122 -11.60107 -11.50948 -11.44473 -11.42141 -11.26725 -10.80571 -10.39802 -9.61701 -8.34099 -6.41928 0.97112 1.07577 1.38480 1.40402 1.52686 1.77990 1.99870 2.34457 2.82114 3.01173 3.39514 3.60751 3.66385 3.71133 3.79236 3.94362 4.06570 4.16684 4.17358 4.25849 4.30151 4.47745 4.48388 4.53783 4.61448 4.62512 4.72268 4.76929 4.84961 4.89662 4.91803 4.95016 4.98376 5.05478 5.11387 5.18106 5.19889 5.22298 5.23400 5.29835 5.35330 5.38408 5.44996 5.51999 5.60054 5.89089 6.15761 6.53019 6.64366 6.77601 7.23144 7.35872 8.81862 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002740 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.438115 B =10217.578777 C =10973.203863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.085 4.085 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.181 3.819 7 H 0.121 0.879 8 N -0.723 5.723 9 C 0.723 3.277 10 O -0.620 6.620 11 N -0.637 5.637 12 C 0.087 3.913 13 C -0.121 4.121 14 C -0.125 4.125 15 C 0.116 3.884 16 C 0.462 3.538 17 O -0.530 6.530 18 O -0.341 6.341 19 C 0.091 3.909 20 C -0.002 4.002 21 C -0.540 4.540 22 H 0.036 0.964 23 C 0.013 3.987 24 N -0.944 5.944 25 Si 0.950 3.050 26 H -0.262 1.262 27 H -0.283 1.283 28 H -0.243 1.243 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 24.109 -17.815 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.105 4.105 4 H 0.111 0.889 5 C -0.205 4.205 6 C 0.073 3.927 7 H 0.139 0.861 8 N -0.380 5.380 9 C 0.425 3.575 10 O -0.501 6.501 11 N -0.375 5.375 12 C -0.036 4.036 13 C -0.159 4.159 14 C -0.163 4.163 15 C -0.006 4.006 16 C 0.305 3.695 17 O -0.419 6.419 18 O -0.256 6.256 19 C 0.018 3.982 20 C -0.040 4.040 21 C -0.578 4.578 22 H 0.054 0.946 23 C -0.185 4.185 24 N -0.584 5.584 25 Si 0.773 3.227 26 H -0.187 1.187 27 H -0.209 1.209 28 H -0.166 1.166 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.019 23.768 -17.832 30.135 hybrid contribution 0.398 -0.690 0.750 1.094 sum -4.621 23.078 -17.082 29.082 Atomic orbital electron populations 1.21757 0.95381 1.01901 1.01496 1.21824 0.96621 0.94722 1.03885 1.21473 0.97219 0.97017 0.94816 0.88855 1.21881 0.93918 1.02118 1.02628 1.20437 1.00483 0.80235 0.91519 0.86142 1.44716 1.22358 1.05457 1.65488 1.15392 0.82534 0.80381 0.79237 1.90908 1.28127 1.78816 1.52243 1.47689 1.25325 1.03293 1.61155 1.22295 0.87218 0.95865 0.98184 1.22622 0.96621 0.92153 1.04467 1.22799 0.95926 0.96760 1.00858 1.22290 0.94755 0.85449 0.98127 1.23896 0.79484 0.81243 0.84876 1.90620 1.37248 1.64567 1.49500 1.86555 1.65736 1.24325 1.49026 1.23025 0.95155 0.94865 0.85171 1.19453 0.97744 0.90140 0.96624 1.21104 1.27961 0.95393 1.13316 0.94599 1.25921 0.96990 0.99461 0.96172 1.70039 1.44056 1.14697 1.29608 0.85657 0.79997 0.78292 0.78791 1.18681 1.20866 1.16630 0.92092 0.93717 0.92256 0.89829 0.90667 0.94268 0.90045 0.92049 0.75300 0.91723 0.90664 0.88983 0.88380 0.87260 0.90830 0.90810 0.91899 0.92015 0.92531 0.94771 0.94481 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.73 71.98 0.70 -2.71 16 2 C -0.13 -3.12 5.21 30.59 0.16 -2.96 16 3 C -0.09 -1.98 2.35 -10.80 -0.03 -2.00 16 4 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 5 C -0.15 -3.18 8.75 71.98 0.63 -2.55 16 6 C 0.18 4.83 2.15 44.25 0.10 4.92 16 7 H 0.12 3.43 5.71 -2.38 -0.01 3.42 16 8 N -0.72 -17.62 4.38 -461.40 -2.02 -19.65 16 9 C 0.72 18.67 8.46 179.05 1.51 20.18 16 10 O -0.62 -20.07 16.28 -3.99 -0.06 -20.13 16 11 N -0.64 -12.18 3.33 -829.81 -2.76 -14.94 16 12 C 0.09 1.11 6.15 86.72 0.53 1.64 16 13 C -0.12 -0.83 6.95 31.78 0.22 -0.61 16 14 C -0.13 -1.00 7.08 31.98 0.23 -0.77 16 15 C 0.12 1.72 6.91 86.85 0.60 2.32 16 16 C 0.46 14.84 5.76 71.24 0.41 15.25 16 17 O -0.53 -18.95 15.60 21.98 0.34 -18.61 16 18 O -0.34 -11.98 7.35 -51.48 -0.38 -12.36 16 19 C 0.09 3.75 5.40 71.98 0.39 4.14 16 20 C 0.00 -0.10 4.42 29.85 0.13 0.03 16 21 C -0.54 -30.72 9.66 25.60 0.25 -30.47 16 22 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 23 C 0.01 0.72 5.47 84.65 0.46 1.19 16 24 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 25 Si 0.95 43.01 27.47 68.60 1.88 44.89 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 28 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.04 1.11 6.33 -2.38 -0.02 1.09 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 33 H 0.07 2.10 5.24 -2.38 -0.01 2.08 16 34 H 0.04 0.99 7.05 -2.39 -0.02 0.97 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.22 7.79 -2.38 -0.02 1.20 16 37 H 0.41 9.23 6.83 -92.71 -0.63 8.59 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.13 8.03 -2.39 -0.02 1.11 16 46 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 47 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 48 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 49 H 0.04 1.63 7.57 -2.39 -0.02 1.61 16 50 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.25 395.58 3.83 -67.42 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.24 Total: 23.79 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.30 Total: 7.59 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.48 Total: -92.59 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.10 Total: -51.10 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -71.25 3.83 -67.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.110 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds