Wall clock time and date at job start Tue Mar 31 2020 15:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 H 1.09001 * 109.47382 * 305.00061 * 3 2 1 5 5 C 1.53001 * 109.47035 * 65.00085 * 3 2 1 6 6 C 1.52997 * 109.47327 * 184.99754 * 3 2 1 7 7 H 1.09009 * 109.46918 * 59.99958 * 6 3 2 8 8 N 1.46492 * 109.47449 * 179.97438 * 6 3 2 9 9 C 1.34776 * 120.00437 * 205.00519 * 8 6 3 10 10 O 1.21286 * 119.99828 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00466 * 180.02562 * 9 8 6 12 12 N 1.46497 * 109.47330 * 179.97438 * 11 9 8 13 13 C 1.36934 * 120.00068 * 269.99804 * 12 11 9 14 14 H 1.08001 * 120.00386 * 188.48730 * 13 12 11 15 15 C 1.38820 * 120.00153 * 8.48756 * 13 12 11 16 16 N 1.31618 * 119.99848 * 27.40136 * 15 13 12 17 17 Si 1.86793 * 120.00109 * 207.40034 * 15 13 12 18 18 H 1.48504 * 109.47091 * 89.99920 * 17 15 13 19 19 H 1.48497 * 109.47308 * 209.99846 * 17 15 13 20 20 H 1.48507 * 109.47336 * 330.00153 * 17 15 13 21 21 C 1.46500 * 119.99806 * 90.00006 * 12 11 9 22 22 C 1.54264 * 110.03039 * 238.23560 * 21 12 11 23 23 C 1.54967 * 104.16197 * 217.13891 * 22 21 12 24 24 C 1.54886 * 102.77684 * 37.88718 * 23 22 21 25 25 C 1.53873 * 110.02964 * 121.01915 * 21 12 11 26 26 C 1.50697 * 109.47273 * 300.00476 * 6 3 2 27 27 O 1.20828 * 119.99853 * 239.99678 * 26 6 3 28 28 O 1.34231 * 120.00353 * 59.99257 * 26 6 3 29 29 H 1.09005 * 109.46719 * 59.99683 * 1 2 3 30 30 H 1.08998 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47055 * 300.00507 * 1 2 3 32 32 H 1.08995 * 109.46922 * 239.99825 * 2 1 3 33 33 H 1.09003 * 109.47201 * 120.00105 * 2 1 3 34 34 H 1.09008 * 109.46710 * 299.99742 * 5 3 2 35 35 H 1.08997 * 109.47532 * 59.99813 * 5 3 2 36 36 H 1.08998 * 109.46889 * 180.02562 * 5 3 2 37 37 H 0.97001 * 119.99890 * 24.99732 * 8 6 3 38 38 H 1.09003 * 109.46947 * 300.00059 * 11 9 8 39 39 H 1.09007 * 109.47052 * 59.99711 * 11 9 8 40 40 H 0.96997 * 119.99762 * 176.55907 * 16 15 13 41 41 H 1.08992 * 110.02060 * 359.62732 * 21 12 11 42 42 H 1.08999 * 110.49085 * 335.78102 * 22 21 12 43 43 H 1.08997 * 110.48994 * 98.42985 * 22 21 12 44 44 H 1.09005 * 110.71762 * 279.57826 * 23 22 21 45 45 H 1.08998 * 110.92514 * 156.29695 * 23 22 21 46 46 H 1.09000 * 110.48885 * 203.40766 * 24 23 22 47 47 H 1.08997 * 110.59739 * 80.81987 * 24 23 22 48 48 H 1.08998 * 110.03420 * 238.56315 * 25 21 12 49 49 H 1.08997 * 110.03408 * 0.02562 * 25 21 12 50 50 H 0.96702 * 116.99722 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 7 4.0532 2.8254 -0.1263 9 6 5.2308 3.1236 -0.7100 10 8 5.8865 2.2484 -1.2345 11 6 5.7335 4.5443 -0.7102 12 7 7.0242 4.6057 -1.4004 13 6 8.1861 4.4368 -0.6958 14 1 9.1381 4.6167 -1.1730 15 6 8.1405 4.0343 0.6320 16 7 7.1270 3.3162 1.0675 17 14 9.5174 4.5116 1.8005 18 1 9.1938 5.8112 2.4421 19 1 9.6644 3.4667 2.8454 20 1 10.7886 4.6365 1.0430 21 6 7.0718 4.8477 -2.8445 22 6 7.7987 3.6852 -3.5514 23 6 8.6034 4.3733 -4.6830 24 6 9.0792 5.6871 -4.0147 25 6 7.8851 6.1202 -3.1391 26 6 4.1657 0.6990 1.0381 27 8 4.9241 1.2636 1.7904 28 8 3.8584 -0.5921 1.2391 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 0.5489 2.1252 1.3969 35 1 2.0699 1.5875 2.1492 36 1 1.9983 3.1543 1.3072 37 1 3.5289 3.5254 0.2934 38 1 5.0155 5.1837 -1.2239 39 1 5.8547 4.8869 0.3175 40 1 7.1193 2.9928 1.9819 41 1 6.0610 4.9510 -3.2390 42 1 8.4713 3.1785 -2.8592 43 1 7.0781 2.9817 -3.9683 44 1 7.9619 4.5854 -5.5383 45 1 9.4547 3.7620 -4.9825 46 1 9.2927 6.4437 -4.7698 47 1 9.9592 5.5066 -3.3975 48 1 7.2694 6.8407 -3.6774 49 1 8.2448 6.5574 -2.2077 50 1 4.2682 -1.0278 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736879834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:08 Heat of formation + Delta-G solvation = -109.644952 kcal Electronic energy + Delta-G solvation = -30400.940097 eV Core-core repulsion = 26428.760896 eV Total energy + Delta-G solvation = -3972.179202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.17556 -38.30164 -37.42693 -36.46912 -35.50127 -33.96876 -32.93526 -30.80594 -29.79399 -28.02001 -27.79480 -26.84981 -25.90189 -23.87092 -22.65702 -21.58388 -19.91875 -19.63619 -19.37099 -18.98961 -17.37551 -16.84484 -16.12658 -15.82612 -15.52811 -15.28055 -14.85365 -14.61754 -14.44056 -13.98555 -13.82613 -13.56957 -13.27323 -13.10683 -12.78349 -12.56694 -12.44433 -12.36204 -12.04204 -11.81252 -11.61911 -11.24902 -11.08534 -10.96287 -10.78090 -10.71850 -10.63791 -10.55511 -10.40582 -10.38855 -10.23599 -10.22076 -10.05852 -9.92175 -9.83702 -9.61046 -9.50164 -8.63920 -8.24360 -8.12242 -6.75710 -5.63309 -2.88411 2.90498 3.36315 3.47582 3.55459 3.57396 4.10333 4.39476 4.64123 4.76492 4.91872 4.96513 5.29937 5.36574 5.36691 5.41149 5.48041 5.49221 5.59405 5.64236 5.75100 5.79144 5.83850 5.89177 5.99241 6.03061 6.06710 6.13951 6.29774 6.30649 6.32985 6.39074 6.45500 6.50445 6.57227 6.57968 6.63108 6.78828 6.91043 6.99925 7.04063 7.15171 7.29041 7.32408 7.41643 7.98877 8.38949 8.54787 8.62636 9.30985 9.74920 10.00589 10.42380 11.45506 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004321 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.002581 B = 6478.550828 C = 7739.720432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.092 4.092 4 H 0.087 0.913 5 C -0.152 4.152 6 C 0.172 3.828 7 H 0.110 0.890 8 N -0.730 5.730 9 C 0.532 3.468 10 O -0.523 6.523 11 C 0.165 3.835 12 N -0.563 5.563 13 C -0.253 4.253 14 H 0.077 0.923 15 C 0.003 3.997 16 N -0.874 5.874 17 Si 0.891 3.109 18 H -0.291 1.291 19 H -0.297 1.297 20 H -0.283 1.283 21 C 0.176 3.824 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.135 4.135 26 C 0.450 3.550 27 O -0.465 6.465 28 O -0.528 6.528 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.390 0.610 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.259 0.741 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.077 0.923 50 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -1.894 -3.513 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.111 4.111 4 H 0.105 0.895 5 C -0.209 4.209 6 C 0.063 3.937 7 H 0.127 0.873 8 N -0.386 5.386 9 C 0.319 3.681 10 O -0.396 6.396 11 C 0.034 3.966 12 N -0.281 5.281 13 C -0.382 4.382 14 H 0.095 0.905 15 C -0.197 4.197 16 N -0.517 5.517 17 Si 0.722 3.278 18 H -0.218 1.218 19 H -0.224 1.224 20 H -0.209 1.209 21 C 0.068 3.932 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.174 4.174 26 C 0.287 3.713 27 O -0.347 6.347 28 O -0.340 6.340 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.375 -2.154 -3.854 13.139 hybrid contribution 0.928 -0.156 1.628 1.880 sum -11.447 -2.310 -2.226 11.888 Atomic orbital electron populations 1.21811 0.96036 1.01356 1.01597 1.21727 0.95319 0.95279 1.04021 1.21374 0.92304 0.97915 0.99485 0.89474 1.21936 1.01480 1.00768 0.96739 1.20201 0.92671 0.85638 0.95217 0.87264 1.46282 1.24643 1.05736 1.61965 1.22347 0.77165 0.94049 0.74525 1.90508 1.53811 1.49551 1.45696 1.20694 0.86382 0.89959 0.99562 1.44122 1.01655 1.80761 1.01604 1.18969 0.85904 1.41360 0.91940 0.90509 1.24740 0.97543 0.99071 0.98322 1.69808 1.31601 1.33208 1.17111 0.86436 0.82101 0.77837 0.81384 1.21846 1.22433 1.20918 1.20931 0.95783 0.92179 0.84333 1.22780 0.99145 0.98347 0.96316 1.22480 0.99109 0.96888 0.97919 1.22257 0.98743 0.96514 0.98061 1.22616 0.96536 0.98578 0.99668 1.24363 0.79798 0.79876 0.87274 1.90846 1.31103 1.67950 1.44795 1.84628 1.69290 1.27532 1.52539 0.92989 0.92924 0.92697 0.91674 0.89640 0.91899 0.92781 0.92196 0.77560 0.94649 0.88119 0.92991 0.93382 0.90137 0.93413 0.92841 0.92946 0.93349 0.92067 0.93628 0.90468 0.74800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.13 -1.32 4.69 -26.73 -0.13 -1.45 16 3 C -0.09 -1.07 2.38 -90.62 -0.22 -1.28 16 4 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -1.67 8.53 37.16 0.32 -1.35 16 6 C 0.17 2.79 2.34 -69.09 -0.16 2.63 16 7 H 0.11 1.94 7.58 -51.92 -0.39 1.55 16 8 N -0.73 -13.25 4.53 -54.94 -0.25 -13.49 16 9 C 0.53 12.13 5.73 -10.99 -0.06 12.07 16 10 O -0.52 -14.11 15.77 5.55 0.09 -14.02 16 11 C 0.17 3.72 5.41 -5.20 -0.03 3.69 16 12 N -0.56 -13.52 1.96 -165.75 -0.33 -13.85 16 13 C -0.25 -6.77 7.62 -15.06 -0.11 -6.88 16 14 H 0.08 2.08 7.73 -52.49 -0.41 1.68 16 15 C 0.00 0.08 4.82 -17.43 -0.08 -0.01 16 16 N -0.87 -24.90 9.08 55.49 0.50 -24.40 16 17 Si 0.89 22.31 29.63 -169.99 -5.04 17.27 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 21 C 0.18 3.63 3.42 -66.81 -0.23 3.40 16 22 C -0.13 -2.61 6.42 -25.03 -0.16 -2.77 16 23 C -0.13 -2.12 6.91 -24.70 -0.17 -2.29 16 24 C -0.12 -1.97 6.83 -25.07 -0.17 -2.15 16 25 C -0.13 -2.46 6.15 -25.61 -0.16 -2.61 16 26 C 0.45 8.11 6.33 36.00 0.23 8.33 16 27 O -0.46 -10.51 17.08 -18.75 -0.32 -10.83 16 28 O -0.53 -7.41 10.43 -39.26 -0.41 -7.82 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.96 5.68 -51.93 -0.29 0.67 16 34 H 0.06 0.56 6.57 -51.92 -0.34 0.22 16 35 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 36 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 37 H 0.39 6.12 6.87 -40.82 -0.28 5.84 16 38 H 0.04 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.10 2.48 6.38 -51.93 -0.33 2.14 16 40 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 41 H 0.05 0.94 7.83 -51.93 -0.41 0.53 16 42 H 0.08 1.97 7.01 -51.93 -0.36 1.60 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.55 7.32 -51.93 -0.38 1.17 16 50 H 0.39 4.23 9.10 45.56 0.41 4.64 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -33.66 387.07 -8.30 -41.97 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.61 Total: 10.92 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.78 Total: 8.42 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.07 Total: -51.74 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.64 Total: -32.67 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.04 Total: 17.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.66 -8.30 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736879834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.677 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds