Wall clock time and date at job start Tue Mar 31 2020 15:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 H 1.09001 * 109.47382 * 305.00061 * 3 2 1 5 5 C 1.53001 * 109.47035 * 65.00085 * 3 2 1 6 6 C 1.52997 * 109.47327 * 184.99754 * 3 2 1 7 7 H 1.09009 * 109.46918 * 59.99958 * 6 3 2 8 8 N 1.46492 * 109.47449 * 179.97438 * 6 3 2 9 9 C 1.34776 * 120.00437 * 205.00519 * 8 6 3 10 10 O 1.21286 * 119.99828 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00466 * 180.02562 * 9 8 6 12 12 N 1.46497 * 109.47330 * 179.97438 * 11 9 8 13 13 C 1.36934 * 120.00068 * 269.99804 * 12 11 9 14 14 H 1.08001 * 120.00386 * 188.48730 * 13 12 11 15 15 C 1.38820 * 120.00153 * 8.48756 * 13 12 11 16 16 N 1.31618 * 119.99848 * 27.40136 * 15 13 12 17 17 Si 1.86793 * 120.00109 * 207.40034 * 15 13 12 18 18 H 1.48504 * 109.47091 * 89.99920 * 17 15 13 19 19 H 1.48497 * 109.47308 * 209.99846 * 17 15 13 20 20 H 1.48507 * 109.47336 * 330.00153 * 17 15 13 21 21 C 1.46500 * 119.99806 * 90.00006 * 12 11 9 22 22 C 1.54264 * 110.03039 * 238.23560 * 21 12 11 23 23 C 1.54967 * 104.16197 * 217.13891 * 22 21 12 24 24 C 1.54886 * 102.77684 * 37.88718 * 23 22 21 25 25 C 1.53873 * 110.02964 * 121.01915 * 21 12 11 26 26 C 1.50697 * 109.47273 * 300.00476 * 6 3 2 27 27 O 1.20828 * 119.99853 * 239.99678 * 26 6 3 28 28 O 1.34231 * 120.00353 * 59.99257 * 26 6 3 29 29 H 1.09005 * 109.46719 * 59.99683 * 1 2 3 30 30 H 1.08998 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47055 * 300.00507 * 1 2 3 32 32 H 1.08995 * 109.46922 * 239.99825 * 2 1 3 33 33 H 1.09003 * 109.47201 * 120.00105 * 2 1 3 34 34 H 1.09008 * 109.46710 * 299.99742 * 5 3 2 35 35 H 1.08997 * 109.47532 * 59.99813 * 5 3 2 36 36 H 1.08998 * 109.46889 * 180.02562 * 5 3 2 37 37 H 0.97001 * 119.99890 * 24.99732 * 8 6 3 38 38 H 1.09003 * 109.46947 * 300.00059 * 11 9 8 39 39 H 1.09007 * 109.47052 * 59.99711 * 11 9 8 40 40 H 0.96997 * 119.99762 * 176.55907 * 16 15 13 41 41 H 1.08992 * 110.02060 * 359.62732 * 21 12 11 42 42 H 1.08999 * 110.49085 * 335.78102 * 22 21 12 43 43 H 1.08997 * 110.48994 * 98.42985 * 22 21 12 44 44 H 1.09005 * 110.71762 * 279.57826 * 23 22 21 45 45 H 1.08998 * 110.92514 * 156.29695 * 23 22 21 46 46 H 1.09000 * 110.48885 * 203.40766 * 24 23 22 47 47 H 1.08997 * 110.59739 * 80.81987 * 24 23 22 48 48 H 1.08998 * 110.03420 * 238.56315 * 25 21 12 49 49 H 1.08997 * 110.03408 * 0.02562 * 25 21 12 50 50 H 0.96702 * 116.99722 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 7 4.0532 2.8254 -0.1263 9 6 5.2308 3.1236 -0.7100 10 8 5.8865 2.2484 -1.2345 11 6 5.7335 4.5443 -0.7102 12 7 7.0242 4.6057 -1.4004 13 6 8.1861 4.4368 -0.6958 14 1 9.1381 4.6167 -1.1730 15 6 8.1405 4.0343 0.6320 16 7 7.1270 3.3162 1.0675 17 14 9.5174 4.5116 1.8005 18 1 9.1938 5.8112 2.4421 19 1 9.6644 3.4667 2.8454 20 1 10.7886 4.6365 1.0430 21 6 7.0718 4.8477 -2.8445 22 6 7.7987 3.6852 -3.5514 23 6 8.6034 4.3733 -4.6830 24 6 9.0792 5.6871 -4.0147 25 6 7.8851 6.1202 -3.1391 26 6 4.1657 0.6990 1.0381 27 8 4.9241 1.2636 1.7904 28 8 3.8584 -0.5921 1.2391 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 0.5489 2.1252 1.3969 35 1 2.0699 1.5875 2.1492 36 1 1.9983 3.1543 1.3072 37 1 3.5289 3.5254 0.2934 38 1 5.0155 5.1837 -1.2239 39 1 5.8547 4.8869 0.3175 40 1 7.1193 2.9928 1.9819 41 1 6.0610 4.9510 -3.2390 42 1 8.4713 3.1785 -2.8592 43 1 7.0781 2.9817 -3.9683 44 1 7.9619 4.5854 -5.5383 45 1 9.4547 3.7620 -4.9825 46 1 9.2927 6.4437 -4.7698 47 1 9.9592 5.5066 -3.3975 48 1 7.2694 6.8407 -3.6774 49 1 8.2448 6.5574 -2.2077 50 1 4.2682 -1.0278 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736879834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:07 Heat of formation + Delta-G solvation = -131.604244 kcal Electronic energy + Delta-G solvation = -30401.892324 eV Core-core repulsion = 26428.760896 eV Total energy + Delta-G solvation = -3973.131428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.58980 -39.99060 -38.96668 -37.70219 -36.92678 -35.75699 -34.39334 -32.76167 -30.92436 -29.35355 -29.29029 -28.29322 -27.71517 -24.90845 -24.40676 -22.87949 -21.36910 -21.01458 -20.75729 -20.68464 -18.77094 -18.49356 -17.80352 -17.29441 -17.23554 -16.67556 -16.34151 -16.23559 -15.86877 -15.47578 -15.12493 -14.87039 -14.83740 -14.50142 -14.19905 -14.09964 -13.96016 -13.87992 -13.22658 -12.91945 -12.82406 -12.74422 -12.63632 -12.56636 -12.42258 -12.31974 -12.12724 -11.89204 -11.79467 -11.76542 -11.71875 -11.60816 -11.53604 -11.35942 -11.29776 -11.28544 -11.20544 -10.53030 -10.17211 -9.80218 -8.68292 -7.72310 -4.95799 1.44487 1.46405 1.47443 1.54117 1.98452 2.53495 2.70248 2.76542 3.36789 3.65324 3.67051 3.92149 4.00223 4.03735 4.06401 4.31457 4.36915 4.41891 4.56713 4.63897 4.67178 4.72353 4.79216 4.81350 4.82736 4.89974 4.95107 4.99780 5.04673 5.06191 5.16380 5.20664 5.22436 5.25806 5.32270 5.33343 5.34748 5.53642 5.58239 5.63687 5.67448 5.73681 5.75885 5.82762 5.86918 6.40197 6.98946 7.18474 7.27741 7.93508 8.11781 8.41040 9.31443 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004321 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.002581 B = 6478.550828 C = 7739.720432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.079 4.079 4 H 0.107 0.893 5 C -0.150 4.150 6 C 0.169 3.831 7 H 0.095 0.905 8 N -0.717 5.717 9 C 0.534 3.466 10 O -0.572 6.572 11 C 0.162 3.838 12 N -0.576 5.576 13 C -0.241 4.241 14 H 0.067 0.933 15 C -0.048 4.048 16 N -0.887 5.887 17 Si 0.942 3.058 18 H -0.285 1.285 19 H -0.314 1.314 20 H -0.280 1.280 21 C 0.166 3.834 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.127 4.127 26 C 0.453 3.547 27 O -0.518 6.518 28 O -0.511 6.511 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.056 0.944 37 H 0.404 0.596 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.241 0.759 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -0.874 -5.177 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.098 4.098 4 H 0.125 0.875 5 C -0.207 4.207 6 C 0.061 3.939 7 H 0.113 0.887 8 N -0.373 5.373 9 C 0.322 3.678 10 O -0.449 6.449 11 C 0.031 3.969 12 N -0.295 5.295 13 C -0.371 4.371 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.532 5.532 17 Si 0.774 3.226 18 H -0.213 1.213 19 H -0.243 1.243 20 H -0.205 1.205 21 C 0.060 3.940 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.166 4.166 26 C 0.293 3.707 27 O -0.404 6.404 28 O -0.324 6.324 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.240 0.760 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -14.292 -1.127 -5.526 15.365 hybrid contribution 1.449 -0.557 2.094 2.606 sum -12.843 -1.685 -3.432 13.400 Atomic orbital electron populations 1.21774 0.93938 1.02195 1.02391 1.21702 0.97040 0.94049 1.03358 1.21385 0.88443 0.99309 1.00679 0.87525 1.21934 1.03164 1.00100 0.95470 1.20444 0.95722 0.83984 0.93797 0.88746 1.45950 1.23445 1.07254 1.60656 1.22250 0.77751 0.93660 0.74129 1.90482 1.55615 1.50730 1.48071 1.20712 0.86798 0.90589 0.98779 1.44281 1.01367 1.80737 1.03107 1.19019 0.86698 1.39359 0.92022 0.91507 1.25269 0.99543 1.00107 0.99590 1.69999 1.32834 1.34586 1.15787 0.85625 0.80483 0.77014 0.79478 1.21260 1.24272 1.20530 1.21219 0.97119 0.93181 0.82512 1.22643 0.98535 0.98210 0.96927 1.22431 0.99197 0.96388 0.97165 1.22243 0.97312 0.97296 0.98333 1.22519 0.97162 0.97611 0.99352 1.24678 0.78576 0.80612 0.86863 1.90842 1.33455 1.69251 1.46855 1.84590 1.68762 1.25815 1.53243 0.92062 0.92169 0.91988 0.92101 0.90590 0.89109 0.94522 0.92485 0.76007 0.90883 0.90422 0.94895 0.91931 0.94878 0.94329 0.90020 0.92190 0.89911 0.93875 0.90550 0.92784 0.72903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.12 -2.37 4.69 30.59 0.14 -2.22 16 3 C -0.08 -1.71 2.38 -10.79 -0.03 -1.74 16 4 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.15 -3.02 8.53 71.98 0.61 -2.40 16 6 C 0.17 5.51 2.34 44.24 0.10 5.61 16 7 H 0.09 3.41 7.58 -2.38 -0.02 3.39 16 8 N -0.72 -26.20 4.53 -446.11 -2.02 -28.22 16 9 C 0.53 24.84 5.73 87.66 0.50 25.34 16 10 O -0.57 -31.93 15.77 -3.05 -0.05 -31.98 16 11 C 0.16 7.35 5.41 85.63 0.46 7.81 16 12 N -0.58 -28.00 1.96 -678.32 -1.33 -29.33 16 13 C -0.24 -13.23 7.62 84.04 0.64 -12.59 16 14 H 0.07 3.74 7.73 -2.91 -0.02 3.71 16 15 C -0.05 -2.75 4.82 84.86 0.41 -2.34 16 16 N -0.89 -52.59 9.08 21.65 0.20 -52.39 16 17 Si 0.94 47.51 29.63 68.60 2.03 49.55 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.31 -16.64 7.11 99.48 0.71 -15.93 16 20 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 21 C 0.17 6.74 3.42 45.71 0.16 6.90 16 22 C -0.12 -5.12 6.42 31.70 0.20 -4.92 16 23 C -0.11 -3.57 6.91 31.91 0.22 -3.35 16 24 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 25 C -0.13 -4.38 6.15 31.32 0.19 -4.19 16 26 C 0.45 16.65 6.33 71.23 0.45 17.10 16 27 O -0.52 -24.31 17.08 21.96 0.38 -23.94 16 28 O -0.51 -14.29 10.43 -51.43 -0.54 -14.83 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 6.56 -2.39 -0.02 0.77 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.60 5.68 -2.39 -0.01 1.59 16 34 H 0.09 1.34 6.57 -2.38 -0.02 1.33 16 35 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16 36 H 0.06 1.18 6.51 -2.39 -0.02 1.16 16 37 H 0.40 12.49 6.87 -92.71 -0.64 11.85 16 38 H 0.07 2.70 7.94 -2.39 -0.02 2.68 16 39 H 0.08 3.91 6.38 -2.38 -0.02 3.89 16 40 H 0.24 14.94 8.32 -92.71 -0.77 14.16 16 41 H 0.06 2.33 7.83 -2.39 -0.02 2.31 16 42 H 0.03 1.66 7.01 -2.39 -0.02 1.65 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.05 2.12 7.32 -2.39 -0.02 2.10 16 50 H 0.41 8.72 9.10 -74.06 -0.67 8.05 16 Total: -1.00 -77.07 387.07 3.29 -73.78 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.36 Total: 33.02 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 4.99 Total: 24.34 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.16 Total: -109.94 kcal Atomic # 8 Polarization: -70.54 SS G_CDS: -0.21 Total: -70.75 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.55 kcal Total: -77.07 3.29 -73.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736879834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.825 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds