Wall clock time and date at job start Tue Mar 31 2020 15:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 H 1.08996 * 109.47197 * 54.99419 * 3 2 1 5 5 C 1.52997 * 109.46806 * 294.99791 * 3 2 1 6 6 C 1.52995 * 109.47248 * 175.00132 * 3 2 1 7 7 H 1.09005 * 109.47389 * 305.00264 * 6 3 2 8 8 N 1.46500 * 109.47361 * 184.99873 * 6 3 2 9 9 C 1.34771 * 120.00206 * 154.99837 * 8 6 3 10 10 O 1.21283 * 120.00264 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00050 * 180.02562 * 9 8 6 12 12 N 1.46501 * 109.47156 * 180.02562 * 11 9 8 13 13 C 1.36937 * 119.99892 * 263.29622 * 12 11 9 14 14 H 1.08001 * 119.99699 * 142.11381 * 13 12 11 15 15 C 1.38808 * 120.00063 * 322.11274 * 13 12 11 16 16 N 1.31623 * 120.00078 * 158.59573 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 338.59450 * 15 13 12 18 18 H 1.48501 * 109.47401 * 96.00567 * 17 15 13 19 19 H 1.48505 * 109.47575 * 216.00499 * 17 15 13 20 20 H 1.48503 * 109.47113 * 336.00382 * 17 15 13 21 21 C 1.46505 * 120.00294 * 83.30152 * 12 11 9 22 22 C 1.54267 * 110.03443 * 122.09137 * 21 12 11 23 23 C 1.54964 * 104.15883 * 95.75565 * 22 21 12 24 24 C 1.54891 * 102.77988 * 37.88622 * 23 22 21 25 25 C 1.53874 * 110.03078 * 239.30897 * 21 12 11 26 26 C 1.50706 * 109.47496 * 64.99862 * 6 3 2 27 27 O 1.20823 * 120.00497 * 119.99958 * 26 6 3 28 28 O 1.34232 * 119.99721 * 300.00453 * 26 6 3 29 29 H 1.09002 * 109.47063 * 60.00214 * 1 2 3 30 30 H 1.09000 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46884 * 300.00494 * 1 2 3 32 32 H 1.08999 * 109.47021 * 239.99979 * 2 1 3 33 33 H 1.09002 * 109.47063 * 119.99785 * 2 1 3 34 34 H 1.09004 * 109.47156 * 60.00162 * 5 3 2 35 35 H 1.08998 * 109.47387 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47531 * 300.00234 * 5 3 2 37 37 H 0.97001 * 119.99850 * 334.99536 * 8 6 3 38 38 H 1.08992 * 109.47421 * 60.00018 * 11 9 8 39 39 H 1.09005 * 109.46923 * 299.99769 * 11 9 8 40 40 H 0.97001 * 120.00089 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.01529 * 0.69813 * 21 12 11 42 42 H 1.09000 * 110.48326 * 214.40100 * 22 21 12 43 43 H 1.08993 * 110.48471 * 337.04543 * 22 21 12 44 44 H 1.09001 * 110.71664 * 279.57338 * 23 22 21 45 45 H 1.09004 * 110.91898 * 156.29558 * 23 22 21 46 46 H 1.08993 * 110.48734 * 203.40760 * 24 23 22 47 47 H 1.09003 * 110.59843 * 80.81618 * 24 23 22 48 48 H 1.09004 * 110.03366 * 359.95018 * 25 21 12 49 49 H 1.08995 * 110.03193 * 121.37427 * 25 21 12 50 50 H 0.96699 * 116.99964 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2190 3.0788 0.8533 10 8 5.8812 2.1663 1.3002 11 6 5.7109 4.4978 0.9772 12 7 7.0016 4.5084 1.6702 13 6 7.0539 4.7537 3.0164 14 1 7.7578 4.2178 3.6359 15 6 6.2024 5.6910 3.5848 16 7 5.9377 5.6439 4.8732 17 14 5.4320 7.0193 2.5211 18 1 4.0726 6.5922 2.1029 19 1 5.3373 8.2820 3.2969 20 1 6.2737 7.2398 1.3176 21 6 8.2364 4.2568 0.9230 22 6 9.2004 5.4513 1.0776 23 6 10.1391 5.0331 2.2374 24 6 10.3409 3.5182 1.9858 25 6 8.9609 3.0283 1.5005 26 6 4.1706 0.8073 -1.0984 27 8 4.9246 1.4405 -1.7987 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5490 2.1252 -1.3969 35 1 1.9982 3.1543 -1.3073 36 1 2.0699 1.5874 -2.1492 37 1 3.5140 3.5536 -0.1121 38 1 4.9886 5.0845 1.5447 39 1 5.8290 4.9295 -0.0167 40 1 5.3423 6.2987 5.2703 41 1 8.0085 4.0948 -0.1306 42 1 9.7706 5.6023 0.1610 43 1 8.6494 6.3548 1.3385 44 1 9.6604 5.2041 3.2017 45 1 11.0893 5.5642 2.1798 46 1 10.6222 3.0122 2.9092 47 1 11.0959 3.3544 1.2168 48 1 8.3943 2.6198 2.3373 49 1 9.0845 2.2701 0.7273 50 1 4.2850 -0.8288 -2.2054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736879835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:13 Heat of formation + Delta-G solvation = -115.710122 kcal Electronic energy + Delta-G solvation = -30139.775902 eV Core-core repulsion = 26167.333695 eV Total energy + Delta-G solvation = -3972.442207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.74345 -38.91689 -37.68148 -36.84992 -36.08422 -34.02600 -33.53672 -31.46938 -30.14673 -28.32781 -27.75597 -27.24572 -26.22156 -24.22297 -22.84866 -21.99667 -20.15703 -20.02581 -19.73067 -18.84138 -17.98560 -17.43699 -16.48939 -16.41552 -15.84548 -15.45027 -15.32512 -15.04819 -14.79534 -14.22277 -14.08099 -14.01838 -13.63785 -13.37853 -13.18754 -12.95244 -12.66842 -12.39446 -12.31863 -12.12544 -12.00481 -11.90812 -11.56457 -11.29650 -11.08059 -10.93153 -10.87659 -10.74543 -10.69384 -10.51738 -10.33513 -10.25134 -10.21827 -10.06985 -9.81565 -9.79483 -9.39598 -9.18968 -8.86890 -8.50087 -6.81335 -5.98372 -3.39240 2.27757 2.79730 3.20495 3.36228 3.43795 3.48899 3.66160 4.41371 4.47696 4.66065 4.70943 4.92437 5.08730 5.14664 5.26280 5.28351 5.34471 5.40840 5.50812 5.51869 5.57481 5.69914 5.73117 5.77492 5.78540 5.86220 5.90335 6.01855 6.14107 6.16915 6.19559 6.25759 6.36325 6.44581 6.49320 6.52728 6.59470 6.65394 6.70641 6.77662 6.87502 7.15263 7.17637 7.41263 7.83763 7.93479 8.07531 8.46259 8.84162 9.02565 9.70862 10.10380 11.17064 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004226 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.016153 B = 6623.441481 C = 7794.491617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.155 4.155 6 C 0.161 3.839 7 H 0.123 0.877 8 N -0.727 5.727 9 C 0.493 3.507 10 O -0.514 6.514 11 C 0.119 3.881 12 N -0.571 5.571 13 C -0.247 4.247 14 H 0.085 0.915 15 C 0.032 3.968 16 N -0.897 5.897 17 Si 0.865 3.135 18 H -0.288 1.288 19 H -0.299 1.299 20 H -0.264 1.264 21 C 0.178 3.822 22 C -0.128 4.128 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.126 4.126 26 C 0.469 3.531 27 O -0.505 6.505 28 O -0.515 6.515 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.399 0.601 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.262 0.738 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.042 0.958 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 -8.035 -12.776 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.113 4.113 4 H 0.113 0.887 5 C -0.212 4.212 6 C 0.052 3.948 7 H 0.140 0.860 8 N -0.384 5.384 9 C 0.278 3.722 10 O -0.386 6.386 11 C -0.012 4.012 12 N -0.290 5.290 13 C -0.376 4.376 14 H 0.102 0.898 15 C -0.168 4.168 16 N -0.539 5.539 17 Si 0.695 3.305 18 H -0.216 1.216 19 H -0.227 1.227 20 H -0.189 1.189 21 C 0.072 3.928 22 C -0.167 4.167 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.165 4.165 26 C 0.309 3.691 27 O -0.391 6.391 28 O -0.326 6.326 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.234 0.766 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.061 0.939 50 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.606 -8.246 -12.096 16.497 hybrid contribution -0.559 0.793 -1.233 1.569 sum -8.164 -7.452 -13.329 17.316 Atomic orbital electron populations 1.21806 0.95624 1.01631 1.01820 1.21702 0.95832 0.94809 1.03939 1.21427 0.91293 0.98570 1.00012 0.88702 1.21984 1.02221 1.00595 0.96410 1.20449 0.93866 0.86018 0.94445 0.85954 1.46315 1.24352 1.05798 1.61901 1.23169 0.79039 0.94754 0.75236 1.90610 1.55178 1.46892 1.45966 1.21432 0.91034 0.90787 0.97956 1.43920 0.97914 1.80688 1.06509 1.18711 1.21170 1.16398 0.81275 0.89796 1.25485 0.98478 0.97747 0.95077 1.69872 1.36659 1.36008 1.11317 0.87106 0.78556 0.83438 0.81448 1.21633 1.22682 1.18869 1.21008 0.86126 0.92566 0.93127 1.22693 0.97350 0.99891 0.96808 1.22449 0.97682 0.94720 1.00543 1.22292 0.97246 0.96762 0.99507 1.22511 0.95181 0.97794 1.00992 1.24272 0.78572 0.79406 0.86848 1.90705 1.33843 1.63516 1.51057 1.84618 1.69093 1.29851 1.49088 0.92645 0.92685 0.92711 0.89789 0.91375 0.91325 0.92255 0.92787 0.76576 0.89552 0.91412 0.92782 0.93316 0.93455 0.91136 0.89988 0.93652 0.92850 0.93348 0.89971 0.93943 0.74043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.13 -1.10 4.88 -26.73 -0.13 -1.23 16 3 C -0.09 -0.94 2.32 -90.62 -0.21 -1.15 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.15 -1.39 8.50 37.16 0.32 -1.07 16 6 C 0.16 2.20 2.29 -69.08 -0.16 2.04 16 7 H 0.12 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.73 -11.48 4.54 -54.93 -0.25 -11.73 16 9 C 0.49 10.10 7.71 -10.99 -0.08 10.01 16 10 O -0.51 -12.25 15.95 5.55 0.09 -12.16 16 11 C 0.12 2.52 4.68 -5.19 -0.02 2.50 16 12 N -0.57 -13.43 1.47 -165.75 -0.24 -13.67 16 13 C -0.25 -6.65 7.73 -15.06 -0.12 -6.76 16 14 H 0.08 2.50 6.81 -52.49 -0.36 2.15 16 15 C 0.03 0.89 5.28 -17.43 -0.09 0.79 16 16 N -0.90 -26.67 13.97 55.49 0.78 -25.90 16 17 Si 0.86 20.74 24.97 -169.99 -4.25 16.49 16 18 H -0.29 -6.53 6.71 56.52 0.38 -6.15 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.18 3.76 3.39 -66.81 -0.23 3.53 16 22 C -0.13 -2.50 6.10 -25.03 -0.15 -2.65 16 23 C -0.12 -2.19 6.56 -24.70 -0.16 -2.35 16 24 C -0.12 -2.17 6.83 -25.07 -0.17 -2.34 16 25 C -0.13 -2.60 6.09 -25.61 -0.16 -2.75 16 26 C 0.47 6.58 6.13 36.01 0.22 6.80 16 27 O -0.50 -8.81 17.08 -18.75 -0.32 -9.13 16 28 O -0.52 -5.29 10.65 -39.26 -0.42 -5.71 16 29 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.75 5.77 -51.93 -0.30 0.45 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.06 0.54 6.77 -51.93 -0.35 0.18 16 36 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 37 H 0.40 5.28 7.18 -40.82 -0.29 4.98 16 38 H 0.09 1.91 3.62 -51.93 -0.19 1.72 16 39 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.50 7.97 -51.93 -0.41 1.08 16 44 H 0.08 1.77 6.89 -51.93 -0.36 1.41 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.98 7.00 -51.93 -0.36 1.61 16 49 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.40 2.59 9.10 45.56 0.41 3.00 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -33.71 384.20 -7.06 -40.77 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.44 Total: 10.66 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.79 Total: 4.60 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.28 Total: -51.30 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.65 Total: -27.01 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.25 Total: 16.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.71 -7.06 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736879835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.941 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds