Wall clock time and date at job start Tue Mar 31 2020 15:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 H 1.08996 * 109.47197 * 54.99419 * 3 2 1 5 5 C 1.52997 * 109.46806 * 294.99791 * 3 2 1 6 6 C 1.52995 * 109.47248 * 175.00132 * 3 2 1 7 7 H 1.09005 * 109.47389 * 305.00264 * 6 3 2 8 8 N 1.46500 * 109.47361 * 184.99873 * 6 3 2 9 9 C 1.34771 * 120.00206 * 154.99837 * 8 6 3 10 10 O 1.21283 * 120.00264 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00050 * 180.02562 * 9 8 6 12 12 N 1.46501 * 109.47156 * 180.02562 * 11 9 8 13 13 C 1.36937 * 119.99892 * 263.29622 * 12 11 9 14 14 H 1.08001 * 119.99699 * 142.11381 * 13 12 11 15 15 C 1.38808 * 120.00063 * 322.11274 * 13 12 11 16 16 N 1.31623 * 120.00078 * 158.59573 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 338.59450 * 15 13 12 18 18 H 1.48501 * 109.47401 * 96.00567 * 17 15 13 19 19 H 1.48505 * 109.47575 * 216.00499 * 17 15 13 20 20 H 1.48503 * 109.47113 * 336.00382 * 17 15 13 21 21 C 1.46505 * 120.00294 * 83.30152 * 12 11 9 22 22 C 1.54267 * 110.03443 * 122.09137 * 21 12 11 23 23 C 1.54964 * 104.15883 * 95.75565 * 22 21 12 24 24 C 1.54891 * 102.77988 * 37.88622 * 23 22 21 25 25 C 1.53874 * 110.03078 * 239.30897 * 21 12 11 26 26 C 1.50706 * 109.47496 * 64.99862 * 6 3 2 27 27 O 1.20823 * 120.00497 * 119.99958 * 26 6 3 28 28 O 1.34232 * 119.99721 * 300.00453 * 26 6 3 29 29 H 1.09002 * 109.47063 * 60.00214 * 1 2 3 30 30 H 1.09000 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46884 * 300.00494 * 1 2 3 32 32 H 1.08999 * 109.47021 * 239.99979 * 2 1 3 33 33 H 1.09002 * 109.47063 * 119.99785 * 2 1 3 34 34 H 1.09004 * 109.47156 * 60.00162 * 5 3 2 35 35 H 1.08998 * 109.47387 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47531 * 300.00234 * 5 3 2 37 37 H 0.97001 * 119.99850 * 334.99536 * 8 6 3 38 38 H 1.08992 * 109.47421 * 60.00018 * 11 9 8 39 39 H 1.09005 * 109.46923 * 299.99769 * 11 9 8 40 40 H 0.97001 * 120.00089 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.01529 * 0.69813 * 21 12 11 42 42 H 1.09000 * 110.48326 * 214.40100 * 22 21 12 43 43 H 1.08993 * 110.48471 * 337.04543 * 22 21 12 44 44 H 1.09001 * 110.71664 * 279.57338 * 23 22 21 45 45 H 1.09004 * 110.91898 * 156.29558 * 23 22 21 46 46 H 1.08993 * 110.48734 * 203.40760 * 24 23 22 47 47 H 1.09003 * 110.59843 * 80.81618 * 24 23 22 48 48 H 1.09004 * 110.03366 * 359.95018 * 25 21 12 49 49 H 1.08995 * 110.03193 * 121.37427 * 25 21 12 50 50 H 0.96699 * 116.99964 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2190 3.0788 0.8533 10 8 5.8812 2.1663 1.3002 11 6 5.7109 4.4978 0.9772 12 7 7.0016 4.5084 1.6702 13 6 7.0539 4.7537 3.0164 14 1 7.7578 4.2178 3.6359 15 6 6.2024 5.6910 3.5848 16 7 5.9377 5.6439 4.8732 17 14 5.4320 7.0193 2.5211 18 1 4.0726 6.5922 2.1029 19 1 5.3373 8.2820 3.2969 20 1 6.2737 7.2398 1.3176 21 6 8.2364 4.2568 0.9230 22 6 9.2004 5.4513 1.0776 23 6 10.1391 5.0331 2.2374 24 6 10.3409 3.5182 1.9858 25 6 8.9609 3.0283 1.5005 26 6 4.1706 0.8073 -1.0984 27 8 4.9246 1.4405 -1.7987 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5490 2.1252 -1.3969 35 1 1.9982 3.1543 -1.3073 36 1 2.0699 1.5874 -2.1492 37 1 3.5140 3.5536 -0.1121 38 1 4.9886 5.0845 1.5447 39 1 5.8290 4.9295 -0.0167 40 1 5.3423 6.2987 5.2703 41 1 8.0085 4.0948 -0.1306 42 1 9.7706 5.6023 0.1610 43 1 8.6494 6.3548 1.3385 44 1 9.6604 5.2041 3.2017 45 1 11.0893 5.5642 2.1798 46 1 10.6222 3.0122 2.9092 47 1 11.0959 3.3544 1.2168 48 1 8.3943 2.6198 2.3373 49 1 9.0845 2.2701 0.7273 50 1 4.2850 -0.8288 -2.2054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736879835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:12 Heat of formation + Delta-G solvation = -138.819745 kcal Electronic energy + Delta-G solvation = -30140.778010 eV Core-core repulsion = 26167.333695 eV Total energy + Delta-G solvation = -3973.444316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90440 -40.44325 -39.22712 -37.91134 -37.16630 -35.81144 -34.80655 -33.49158 -31.14800 -29.53406 -29.34673 -28.68887 -27.90108 -25.06850 -24.58226 -23.18668 -21.60814 -21.30070 -20.91408 -20.62038 -19.08522 -18.93959 -18.13522 -17.70752 -17.22178 -16.94322 -16.86086 -16.52575 -15.88042 -15.62846 -15.53037 -15.21295 -14.98471 -14.63070 -14.52017 -14.43363 -14.09810 -14.03289 -13.84408 -13.12042 -12.97461 -12.85986 -12.78245 -12.74461 -12.52230 -12.48083 -12.07573 -11.96020 -11.94424 -11.80712 -11.74249 -11.69878 -11.61802 -11.57195 -11.42620 -11.39112 -11.14740 -10.91136 -10.53053 -10.25492 -8.72810 -8.10903 -5.51100 1.15754 1.29449 1.45691 1.55598 1.60200 1.94541 2.39815 2.46356 3.08808 3.32680 3.49031 3.79383 3.90881 3.93305 3.99108 4.11781 4.21312 4.24056 4.33300 4.39987 4.44640 4.52154 4.60055 4.64640 4.72456 4.76166 4.77649 4.91842 4.93667 4.98650 5.00156 5.08570 5.12721 5.14973 5.24127 5.27780 5.28088 5.33776 5.47171 5.51023 5.56443 5.57113 5.58078 5.75602 6.00349 6.31791 6.49425 6.94981 7.00124 7.34555 7.67370 8.07811 9.08971 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004226 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.016153 B = 6623.441481 C = 7794.491617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.086 4.086 4 H 0.099 0.901 5 C -0.153 4.153 6 C 0.155 3.845 7 H 0.104 0.896 8 N -0.712 5.712 9 C 0.492 3.508 10 O -0.557 6.557 11 C 0.111 3.889 12 N -0.582 5.582 13 C -0.227 4.227 14 H 0.036 0.964 15 C -0.026 4.026 16 N -0.952 5.952 17 Si 0.931 3.069 18 H -0.263 1.263 19 H -0.311 1.311 20 H -0.247 1.247 21 C 0.170 3.830 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.121 4.121 26 C 0.477 3.523 27 O -0.542 6.542 28 O -0.501 6.501 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.414 0.586 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.049 0.951 50 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 -7.778 -16.048 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.105 4.105 4 H 0.117 0.883 5 C -0.210 4.210 6 C 0.047 3.953 7 H 0.122 0.878 8 N -0.368 5.368 9 C 0.278 3.722 10 O -0.433 6.433 11 C -0.019 4.019 12 N -0.302 5.302 13 C -0.357 4.357 14 H 0.054 0.946 15 C -0.221 4.221 16 N -0.597 5.597 17 Si 0.758 3.242 18 H -0.190 1.190 19 H -0.240 1.240 20 H -0.170 1.170 21 C 0.064 3.936 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.160 4.160 26 C 0.318 3.682 27 O -0.431 6.431 28 O -0.313 6.313 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -8.691 -8.024 -15.444 19.453 hybrid contribution -0.239 0.507 -0.238 0.609 sum -8.930 -7.517 -15.682 19.550 Atomic orbital electron populations 1.21785 0.94147 1.02325 1.02304 1.21685 0.97024 0.93715 1.03616 1.21445 0.88200 0.99802 1.01035 0.88273 1.21988 1.03588 1.00221 0.95204 1.20638 0.96386 0.84348 0.93898 0.87826 1.45973 1.22859 1.07557 1.60413 1.22847 0.80034 0.94023 0.75335 1.90602 1.56827 1.47827 1.48080 1.21532 0.89847 0.91423 0.99066 1.43956 0.99757 1.81061 1.05428 1.18373 1.19508 1.15247 0.82594 0.94628 1.26085 0.99886 0.99898 0.96234 1.70025 1.38794 1.37191 1.13654 0.86024 0.79098 0.79222 0.79821 1.18997 1.23958 1.17008 1.21222 0.85700 0.93314 0.93379 1.22659 0.97077 0.98002 0.98386 1.22377 0.98699 0.95666 0.98439 1.22260 0.96416 0.95934 1.00342 1.22399 0.96223 0.97959 0.99430 1.24123 0.77646 0.80107 0.86299 1.90694 1.35443 1.64629 1.52351 1.84562 1.68683 1.27924 1.50169 0.91662 0.91968 0.92703 0.89696 0.92155 0.89225 0.92275 0.93261 0.74815 0.90267 0.88175 0.93024 0.91963 0.89840 0.93059 0.94064 0.90555 0.93216 0.89932 0.94626 0.93192 0.71670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.11 16 2 C -0.12 -1.92 4.88 30.59 0.15 -1.77 16 3 C -0.09 -1.56 2.32 -10.79 -0.03 -1.58 16 4 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.15 -2.32 8.50 71.98 0.61 -1.71 16 6 C 0.16 4.13 2.29 44.25 0.10 4.23 16 7 H 0.10 3.21 7.58 -2.38 -0.02 3.19 16 8 N -0.71 -21.75 4.54 -446.10 -2.03 -23.77 16 9 C 0.49 20.11 7.71 87.66 0.68 20.79 16 10 O -0.56 -27.32 15.95 -3.04 -0.05 -27.36 16 11 C 0.11 4.61 4.68 85.63 0.40 5.01 16 12 N -0.58 -27.61 1.47 -678.32 -1.00 -28.61 16 13 C -0.23 -12.79 7.73 84.03 0.65 -12.14 16 14 H 0.04 2.32 6.81 -2.91 -0.02 2.30 16 15 C -0.03 -1.47 5.28 84.86 0.45 -1.02 16 16 N -0.95 -59.26 13.97 21.65 0.30 -58.95 16 17 Si 0.93 43.04 24.97 68.60 1.71 44.76 16 18 H -0.26 -11.02 6.71 99.48 0.67 -10.35 16 19 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 20 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 21 C 0.17 7.05 3.39 45.71 0.16 7.20 16 22 C -0.12 -4.55 6.10 31.70 0.19 -4.36 16 23 C -0.11 -4.23 6.56 31.91 0.21 -4.03 16 24 C -0.11 -3.95 6.83 31.67 0.22 -3.74 16 25 C -0.12 -5.06 6.09 31.32 0.19 -4.87 16 26 C 0.48 12.80 6.13 71.24 0.44 13.23 16 27 O -0.54 -18.27 17.08 21.97 0.38 -17.90 16 28 O -0.50 -9.35 10.65 -51.44 -0.55 -9.90 16 29 H 0.06 0.68 6.57 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.31 5.77 -2.39 -0.01 1.30 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.01 6.57 -2.38 -0.02 0.99 16 35 H 0.06 0.90 6.77 -2.39 -0.02 0.89 16 36 H 0.05 0.81 7.07 -2.39 -0.02 0.79 16 37 H 0.41 10.10 7.18 -92.71 -0.67 9.44 16 38 H 0.08 3.39 3.62 -2.39 -0.01 3.38 16 39 H 0.10 3.48 8.07 -2.38 -0.02 3.46 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.06 2.41 7.91 -2.39 -0.02 2.39 16 42 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 44 H 0.04 1.85 6.89 -2.39 -0.02 1.83 16 45 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.03 1.80 7.00 -2.38 -0.02 1.79 16 49 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.42 4.45 9.10 -74.06 -0.67 3.77 16 Total: -1.00 -77.70 384.20 3.46 -74.24 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.42 Total: 33.37 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.11 Total: 14.13 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -2.72 Total: -111.33 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.22 Total: -55.16 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.71 Total: 44.76 kcal Total: -77.70 3.46 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736879835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.578 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds