Wall clock time and date at job start Tue Mar 31 2020 15:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47105 * 2 1 4 4 H 1.09000 * 109.47261 * 305.82329 * 3 2 1 5 5 C 1.53002 * 109.47112 * 65.82222 * 3 2 1 6 6 C 1.52996 * 109.47172 * 185.82407 * 3 2 1 7 7 H 1.09000 * 109.47225 * 57.30950 * 6 3 2 8 8 N 1.46500 * 109.46905 * 297.31449 * 6 3 2 9 9 C 1.34784 * 119.99936 * 154.99731 * 8 6 3 10 10 O 1.21280 * 120.00118 * 0.02562 * 9 8 6 11 11 C 1.50694 * 119.99832 * 180.02562 * 9 8 6 12 12 N 1.46503 * 109.47395 * 180.02562 * 11 9 8 13 13 C 1.36934 * 119.99904 * 270.00409 * 12 11 9 14 14 H 1.08007 * 120.00157 * 145.52535 * 13 12 11 15 15 C 1.38812 * 119.99959 * 325.52172 * 13 12 11 16 16 N 1.31621 * 119.99936 * 155.83285 * 15 13 12 17 17 Si 1.86798 * 119.99895 * 335.83448 * 15 13 12 18 18 H 1.48500 * 109.47258 * 95.33971 * 17 15 13 19 19 H 1.48504 * 109.46898 * 215.33732 * 17 15 13 20 20 H 1.48499 * 109.47050 * 335.33654 * 17 15 13 21 21 C 1.46502 * 120.00089 * 89.99630 * 12 11 9 22 22 C 1.54262 * 110.03330 * 120.69861 * 21 12 11 23 23 C 1.54966 * 104.15917 * 95.75491 * 22 21 12 24 24 C 1.54887 * 102.77525 * 37.88782 * 23 22 21 25 25 C 1.53873 * 110.03506 * 237.91996 * 21 12 11 26 26 C 1.50697 * 109.47270 * 177.31589 * 6 3 2 27 27 O 1.20823 * 119.99974 * 95.83329 * 26 6 3 28 28 O 1.34229 * 119.99833 * 275.82708 * 26 6 3 29 29 H 1.09006 * 109.46706 * 60.00163 * 1 2 3 30 30 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47603 * 300.00533 * 1 2 3 32 32 H 1.09003 * 109.47034 * 239.99893 * 2 1 3 33 33 H 1.08997 * 109.47046 * 120.00322 * 2 1 3 34 34 H 1.08996 * 109.47070 * 299.99894 * 5 3 2 35 35 H 1.09000 * 109.46971 * 59.99929 * 5 3 2 36 36 H 1.09000 * 109.46589 * 179.97438 * 5 3 2 37 37 H 0.96997 * 120.00244 * 334.99747 * 8 6 3 38 38 H 1.08999 * 109.47331 * 60.00023 * 11 9 8 39 39 H 1.09007 * 109.47179 * 300.00082 * 11 9 8 40 40 H 0.97000 * 119.99849 * 179.97438 * 16 15 13 41 41 H 1.09008 * 110.01375 * 359.30913 * 21 12 11 42 42 H 1.08996 * 110.49264 * 214.40230 * 22 21 12 43 43 H 1.09003 * 110.48526 * 337.05167 * 22 21 12 44 44 H 1.09000 * 110.71909 * 279.57802 * 23 22 21 45 45 H 1.09000 * 110.92174 * 156.29912 * 23 22 21 46 46 H 1.09003 * 110.48854 * 203.40326 * 24 23 22 47 47 H 1.09003 * 110.59968 * 80.82082 * 24 23 22 48 48 H 1.09004 * 110.03121 * 359.94984 * 25 21 12 49 49 H 1.08998 * 110.03688 * 121.38045 * 25 21 12 50 50 H 0.96704 * 117.00182 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5940 1.9855 -0.8332 5 6 1.6530 2.1202 1.3160 6 6 3.5629 1.4450 -0.1464 7 1 3.8410 0.9201 -1.0603 8 7 4.1654 0.7708 1.0064 9 6 5.3832 0.2042 0.8950 10 8 5.9806 0.2528 -0.1594 11 6 6.0027 -0.4898 2.0806 12 7 7.3170 -1.0175 1.7058 13 6 7.4266 -2.2841 1.1972 14 1 8.1701 -2.5013 0.4445 15 6 6.5822 -3.2889 1.6490 16 7 6.3361 -4.3337 0.8873 17 14 5.7951 -3.1583 3.3380 18 1 4.4365 -2.5732 3.2071 19 1 5.6954 -4.5106 3.9436 20 1 6.6276 -2.2873 4.2060 21 6 8.5140 -0.1899 1.8751 22 6 9.5112 -0.8904 2.8210 23 6 10.4864 -1.6253 1.8668 24 6 10.6420 -0.6222 0.6970 25 6 9.2324 -0.0196 0.5251 26 6 4.0589 2.8664 -0.2126 27 8 4.4572 3.4145 0.7878 28 8 4.0583 3.5236 -1.3830 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5680 2.1185 1.4202 35 1 2.0989 1.5772 2.1492 36 1 2.0167 3.1477 1.3161 37 1 3.6878 0.7322 1.8498 38 1 5.3589 -1.3097 2.3988 39 1 6.1168 0.2212 2.8989 40 1 5.7463 -5.0361 1.2031 41 1 8.2395 0.7852 2.2777 42 1 10.0471 -0.1560 3.4222 43 1 8.9927 -1.6040 3.4614 44 1 10.0516 -2.5617 1.5174 45 1 11.4456 -1.8040 2.3527 46 1 10.9489 -1.1403 -0.2116 47 1 11.3611 0.1563 0.9524 48 1 8.6909 -0.5535 -0.2559 49 1 9.3067 1.0380 0.2724 50 1 4.3861 4.4333 -1.3760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736879836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:17 Heat of formation + Delta-G solvation = -136.770851 kcal Electronic energy + Delta-G solvation = -30278.436928 eV Core-core repulsion = 26305.081459 eV Total energy + Delta-G solvation = -3973.355469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88923 -40.46059 -39.29131 -38.08147 -37.09650 -35.81427 -34.62517 -33.47606 -31.33841 -29.57248 -29.34949 -28.68321 -27.88157 -25.40299 -24.60156 -22.75399 -21.91047 -21.31303 -20.77451 -20.61965 -19.25774 -18.87609 -18.10874 -17.83872 -17.28796 -17.00524 -16.73522 -16.50211 -15.86034 -15.70682 -15.53951 -15.21349 -14.98823 -14.69788 -14.55518 -14.40463 -14.21548 -13.96349 -13.84635 -13.13936 -13.04602 -13.01810 -12.76788 -12.53638 -12.49685 -12.46900 -12.21687 -12.05314 -11.98294 -11.83261 -11.80911 -11.70715 -11.58121 -11.55723 -11.49559 -11.41532 -11.13488 -10.92738 -10.49566 -10.23406 -8.78692 -8.10314 -5.44578 1.06642 1.27509 1.44873 1.53810 1.62354 1.93341 2.39200 2.46226 3.07088 3.34183 3.50393 3.76518 3.83670 3.92852 3.96471 4.10950 4.21771 4.23832 4.32237 4.38795 4.41615 4.46088 4.56116 4.63362 4.64293 4.72487 4.76108 4.91886 4.93365 4.95886 4.98980 5.04574 5.10108 5.15091 5.22112 5.23430 5.28081 5.33808 5.38434 5.48715 5.50100 5.53077 5.57556 5.75464 5.99641 6.30955 6.48523 6.91406 6.99257 7.33939 7.68998 8.07000 9.09917 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.004815 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.759751 B = 5813.863671 C = 7262.157088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.079 4.079 4 H 0.110 0.890 5 C -0.153 4.153 6 C 0.156 3.844 7 H 0.100 0.900 8 N -0.709 5.709 9 C 0.488 3.512 10 O -0.555 6.555 11 C 0.110 3.890 12 N -0.581 5.581 13 C -0.221 4.221 14 H 0.039 0.961 15 C -0.030 4.030 16 N -0.950 5.950 17 Si 0.928 3.072 18 H -0.263 1.263 19 H -0.313 1.313 20 H -0.248 1.248 21 C 0.167 3.833 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.125 4.125 26 C 0.475 3.525 27 O -0.533 6.533 28 O -0.511 6.511 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.259 0.741 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 15.387 2.617 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.098 4.098 4 H 0.128 0.872 5 C -0.210 4.210 6 C 0.048 3.952 7 H 0.118 0.882 8 N -0.366 5.366 9 C 0.274 3.726 10 O -0.431 6.431 11 C -0.020 4.020 12 N -0.301 5.301 13 C -0.352 4.352 14 H 0.057 0.943 15 C -0.225 4.225 16 N -0.595 5.595 17 Si 0.756 3.244 18 H -0.191 1.191 19 H -0.242 1.242 20 H -0.171 1.171 21 C 0.061 3.939 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.164 4.164 26 C 0.316 3.684 27 O -0.423 6.423 28 O -0.324 6.324 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.252 0.748 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.053 0.947 49 H 0.072 0.928 50 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.817 15.033 2.118 17.556 hybrid contribution -0.262 -0.074 0.453 0.529 sum -9.079 14.959 2.571 17.686 Atomic orbital electron populations 1.21779 0.93436 1.02223 1.02946 1.21552 0.97674 0.94356 1.02180 1.21407 0.88058 0.98850 1.01495 0.87164 1.21961 1.03509 0.99856 0.95645 1.20549 0.95930 0.86101 0.92655 0.88164 1.46042 1.19424 1.56358 1.14789 1.22924 0.80546 0.77122 0.92011 1.90620 1.62535 1.59181 1.30805 1.21545 0.88708 0.97743 0.93977 1.43978 1.00009 1.12122 1.73992 1.18383 1.17579 0.84525 1.14665 0.94336 1.25980 1.00084 0.95549 1.00884 1.70060 1.39298 1.13002 1.37160 0.86102 0.79058 0.76147 0.83095 1.19058 1.24182 1.17129 1.21288 0.86244 0.92625 0.93747 1.22672 0.96807 0.99229 0.97423 1.22386 0.98668 0.97951 0.96297 1.22249 0.96202 0.98435 0.98003 1.22438 0.96213 0.99029 0.98697 1.24187 0.73831 0.89826 0.80515 1.90667 1.44852 1.69276 1.37479 1.84510 1.78616 1.33911 1.35346 0.91612 0.92695 0.91160 0.92733 0.92374 0.89145 0.92300 0.93105 0.74845 0.90808 0.87492 0.93177 0.91355 0.89674 0.93112 0.94156 0.90572 0.93324 0.89822 0.94658 0.92760 0.71304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.68 71.98 0.70 -1.49 16 2 C -0.12 -2.42 5.18 30.59 0.16 -2.26 16 3 C -0.08 -1.51 2.20 -10.80 -0.02 -1.53 16 4 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.15 -2.50 8.52 71.98 0.61 -1.89 16 6 C 0.16 4.27 2.20 44.24 0.10 4.37 16 7 H 0.10 3.20 7.58 -2.39 -0.02 3.19 16 8 N -0.71 -21.99 4.07 -446.10 -1.81 -23.81 16 9 C 0.49 19.98 7.86 87.65 0.69 20.66 16 10 O -0.56 -27.40 16.09 -3.03 -0.05 -27.45 16 11 C 0.11 4.51 4.98 85.63 0.43 4.93 16 12 N -0.58 -27.11 1.50 -678.30 -1.02 -28.13 16 13 C -0.22 -12.39 7.83 84.03 0.66 -11.73 16 14 H 0.04 2.48 6.65 -2.91 -0.02 2.46 16 15 C -0.03 -1.72 5.29 84.86 0.45 -1.27 16 16 N -0.95 -59.40 13.97 21.65 0.30 -59.10 16 17 Si 0.93 43.11 25.04 68.60 1.72 44.82 16 18 H -0.26 -11.08 6.64 99.48 0.66 -10.42 16 19 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 20 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 21 C 0.17 6.68 3.47 45.71 0.16 6.84 16 22 C -0.12 -4.40 6.12 31.69 0.19 -4.20 16 23 C -0.12 -4.17 6.54 31.91 0.21 -3.96 16 24 C -0.11 -3.82 6.83 31.67 0.22 -3.60 16 25 C -0.12 -5.05 6.14 31.32 0.19 -4.85 16 26 C 0.48 13.17 6.59 71.23 0.47 13.64 16 27 O -0.53 -17.08 16.81 21.97 0.37 -16.71 16 28 O -0.51 -11.22 13.42 -51.41 -0.69 -11.91 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.86 6.59 -2.39 -0.02 0.85 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 34 H 0.09 1.09 6.59 -2.39 -0.02 1.07 16 35 H 0.06 0.99 6.38 -2.39 -0.02 0.98 16 36 H 0.05 0.93 6.93 -2.39 -0.02 0.92 16 37 H 0.41 10.57 6.67 -92.71 -0.62 9.95 16 38 H 0.07 3.15 2.99 -2.39 -0.01 3.14 16 39 H 0.11 3.58 7.94 -2.38 -0.02 3.56 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.07 2.47 7.83 -2.38 -0.02 2.45 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.05 2.03 8.00 -2.39 -0.02 2.01 16 44 H 0.04 1.78 6.87 -2.39 -0.02 1.76 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.03 1.76 6.94 -2.39 -0.02 1.74 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.43 5.47 9.10 -74.05 -0.67 4.79 16 Total: -1.00 -77.04 387.68 3.64 -73.40 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.38 Total: 35.23 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.20 Total: 13.65 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -2.53 Total: -111.03 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.37 Total: -56.06 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.72 Total: 44.82 kcal Total: -77.04 3.64 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736879836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.374 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds