Wall clock time and date at job start Tue Mar 31 2020 14:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 C 1.53003 * 109.47365 * 240.00606 * 2 1 3 5 5 O 1.45194 * 109.47419 * 120.00230 * 2 1 3 6 6 C 1.34633 * 117.00380 * 59.99894 * 5 2 1 7 7 O 1.21514 * 119.99358 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00310 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99987 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47127 * 60.00329 * 9 8 6 11 11 C 1.53001 * 109.47528 * 300.00273 * 9 8 6 12 12 C 1.52997 * 109.47260 * 180.02562 * 9 8 6 13 13 C 1.50706 * 109.47287 * 180.02562 * 12 9 8 14 14 O 1.21288 * 119.99610 * 0.02562 * 13 12 9 15 15 N 1.34781 * 119.99933 * 180.02562 * 13 12 9 16 16 C 1.37091 * 119.99778 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99924 * 224.29666 * 16 15 13 18 18 C 1.38947 * 120.00628 * 44.28845 * 16 15 13 19 19 N 1.31423 * 119.99486 * 18.22611 * 18 16 15 20 20 Si 1.86794 * 120.00652 * 198.22332 * 18 16 15 21 21 H 1.48499 * 109.47114 * 90.00033 * 20 18 16 22 22 H 1.48499 * 109.47704 * 210.00305 * 20 18 16 23 23 H 1.48503 * 109.46892 * 330.00203 * 20 18 16 24 24 C 1.46497 * 119.99889 * 359.97438 * 15 13 12 25 25 C 1.53005 * 117.49710 * 183.22780 * 24 15 13 26 26 C 1.53000 * 117.49716 * 114.60668 * 24 15 13 27 27 H 1.08994 * 109.47362 * 299.99719 * 1 2 3 28 28 H 1.08995 * 109.47356 * 60.00001 * 1 2 3 29 29 H 1.09002 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46937 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47153 * 300.00124 * 3 2 1 32 32 H 1.08996 * 109.46675 * 60.00494 * 3 2 1 33 33 H 1.09002 * 109.46680 * 299.99453 * 4 2 1 34 34 H 1.08995 * 109.47379 * 59.99407 * 4 2 1 35 35 H 1.08997 * 109.47177 * 179.97438 * 4 2 1 36 36 H 0.96999 * 120.00426 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.47536 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47032 * 300.00419 * 10 9 8 39 39 H 1.09003 * 109.47008 * 59.99805 * 10 9 8 40 40 H 1.08991 * 109.46956 * 300.00308 * 11 9 8 41 41 H 1.08999 * 109.46577 * 59.99614 * 11 9 8 42 42 H 1.08999 * 109.47279 * 179.97438 * 11 9 8 43 43 H 1.09003 * 109.47178 * 300.00381 * 12 9 8 44 44 H 1.09002 * 109.47156 * 60.00248 * 12 9 8 45 45 H 0.97004 * 119.99606 * 174.93593 * 19 18 16 46 46 H 1.08998 * 115.55471 * 328.94035 * 24 15 13 47 47 H 1.09004 * 117.49452 * 0.02562 * 25 24 15 48 48 H 1.08994 * 117.49851 * 145.02329 * 25 24 15 49 49 H 1.08998 * 117.50232 * 214.97958 * 26 24 15 50 50 H 1.09005 * 117.50033 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5096 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.6741 -4.0668 2.5830 10 6 2.1874 -4.8855 1.3966 11 6 0.1485 -4.1635 2.6473 12 6 2.2744 -4.6149 3.8792 13 6 1.8695 -6.0565 4.0502 14 8 1.1701 -6.5928 3.2169 15 7 2.2847 -6.7496 5.1290 16 6 1.9168 -8.0611 5.2842 17 1 1.5801 -8.4172 6.2466 18 6 1.9769 -8.9322 4.2034 19 7 2.7024 -8.6251 3.1515 20 14 1.0267 -10.5399 4.2454 21 1 -0.3302 -10.3277 3.6807 22 1 1.7442 -11.5603 3.4397 23 1 0.9107 -11.0097 5.6493 24 6 3.1299 -6.1019 6.1350 25 6 3.6305 -6.9622 7.2970 26 6 2.5428 -5.9128 7.5352 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7207 -1.2495 36 1 2.6278 -2.2369 3.0827 37 1 1.8947 -5.9280 1.5207 38 1 1.7595 -4.4949 0.4734 39 1 3.2743 -4.8166 1.3509 40 1 -0.2171 -3.5803 3.4924 41 1 -0.2794 -3.7729 1.7240 42 1 -0.1447 -5.2060 2.7707 43 1 3.3613 -4.5460 3.8339 44 1 1.9083 -4.0317 4.7242 45 1 2.8038 -9.2642 2.4289 46 1 3.7964 -5.3253 5.7597 47 1 3.3312 -8.0102 7.3127 48 1 4.6265 -6.7519 7.6863 49 1 2.8233 -5.0121 8.0812 50 1 1.5275 -6.2699 7.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739537131.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:59 Heat of formation + Delta-G solvation = -75.540730 kcal Electronic energy + Delta-G solvation = -29948.666877 eV Core-core repulsion = 25977.966545 eV Total energy + Delta-G solvation = -3970.700332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72477 -39.11866 -37.74576 -36.33921 -35.09623 -34.10202 -32.85150 -31.16611 -30.89705 -27.75431 -27.49800 -27.43055 -26.52438 -24.69996 -23.01492 -21.74995 -21.25063 -20.33359 -19.55045 -18.85068 -17.94796 -16.49903 -16.22802 -16.06231 -15.92684 -15.11220 -14.58836 -14.47961 -14.40273 -14.37371 -14.00118 -13.66336 -13.43186 -13.02418 -12.99526 -12.72432 -12.56512 -12.31766 -11.98096 -11.96258 -11.87853 -11.62080 -11.40011 -11.29020 -11.25660 -11.04772 -10.98323 -10.91220 -10.83931 -10.61404 -10.46459 -10.31958 -10.22139 -10.09118 -9.93567 -9.75731 -9.50159 -8.79823 -8.70681 -7.90610 -7.02899 -6.12500 -3.88352 2.35907 3.11282 3.30787 3.37404 3.41289 4.06132 4.20250 4.34104 4.64943 4.68427 4.73786 4.83176 4.84723 5.20234 5.26551 5.34258 5.43249 5.51355 5.55747 5.57018 5.58198 5.60680 5.66807 5.74355 5.79518 5.79690 5.86844 6.04333 6.09481 6.17055 6.19486 6.25200 6.28201 6.38294 6.43320 6.53437 6.61148 6.64640 6.67980 6.71826 6.90264 6.93775 7.16419 7.34600 7.61084 7.79282 8.25714 8.67492 9.04610 9.13608 9.64806 10.26600 10.96049 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003236 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.766713 B = 8651.444906 C = 9548.540543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.372 6.372 6 C 0.650 3.350 7 O -0.561 6.561 8 N -0.704 5.704 9 C 0.213 3.787 10 C -0.169 4.169 11 C -0.170 4.170 12 C -0.138 4.138 13 C 0.492 3.508 14 O -0.519 6.519 15 N -0.426 5.426 16 C -0.349 4.349 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.831 5.831 20 Si 0.912 3.088 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.074 3.926 25 C -0.173 4.173 26 C -0.208 4.208 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.264 0.736 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 16.473 -1.378 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.287 6.287 6 C 0.403 3.597 7 O -0.450 6.450 8 N -0.362 5.362 9 C 0.129 3.871 10 C -0.226 4.226 11 C -0.227 4.227 12 C -0.179 4.179 13 C 0.280 3.720 14 O -0.398 6.398 15 N -0.146 5.146 16 C -0.476 4.476 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.464 5.464 20 Si 0.739 3.261 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.032 4.032 25 C -0.211 4.211 26 C -0.247 4.247 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.641 15.928 -2.518 16.139 hybrid contribution 0.158 -0.382 0.398 0.574 sum 0.799 15.546 -2.120 15.711 Atomic orbital electron populations 1.22511 0.94154 1.05276 1.02083 1.21967 0.94265 0.91321 0.82448 1.21848 1.02124 0.92873 1.02848 1.22515 1.01431 1.03801 0.96314 1.86283 1.71889 1.24381 1.46193 1.18083 0.79054 0.79992 0.82559 1.90844 1.41015 1.69859 1.43304 1.45251 1.54983 1.12928 1.23076 1.19994 0.95516 0.76132 0.95414 1.22452 0.99272 1.03820 0.97092 1.22452 0.93630 1.05344 1.01304 1.21857 1.01394 0.97916 0.96748 1.19287 0.83083 0.85678 0.83988 1.90411 1.38747 1.69832 1.40776 1.42734 1.43009 1.09759 1.19135 1.18825 1.46816 0.84320 0.97618 0.90572 1.25208 0.94732 0.98032 0.95511 1.69821 1.33711 1.35128 1.07739 0.86227 0.80484 0.81545 0.77831 1.20280 1.21373 1.20049 1.21706 0.97058 0.99223 0.85238 1.23058 0.97271 0.98451 1.02323 1.23312 0.99073 1.00529 1.01750 0.92368 0.91477 0.89108 0.91612 0.90392 0.91633 0.89084 0.91479 0.92339 0.76839 0.87158 0.91824 0.94326 0.94318 0.91475 0.87954 0.90301 0.90295 0.92568 0.88113 0.87467 0.89851 0.89849 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 2 C 0.14 1.57 1.13 -90.62 -0.10 1.47 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 5 O -0.37 -5.15 9.94 -40.31 -0.40 -5.55 16 6 C 0.65 10.32 7.48 54.05 0.40 10.73 16 7 O -0.56 -10.03 8.09 -19.28 -0.16 -10.18 16 8 N -0.70 -10.65 5.11 -52.47 -0.27 -10.92 16 9 C 0.21 3.82 0.80 -131.82 -0.11 3.71 16 10 C -0.17 -3.42 8.10 37.16 0.30 -3.12 16 11 C -0.17 -3.23 8.10 37.16 0.30 -2.93 16 12 C -0.14 -2.49 3.50 -27.88 -0.10 -2.58 16 13 C 0.49 11.52 6.38 -10.98 -0.07 11.45 16 14 O -0.52 -13.81 9.11 5.55 0.05 -13.76 16 15 N -0.43 -10.06 2.83 -107.73 -0.31 -10.37 16 16 C -0.35 -9.12 7.92 -14.94 -0.12 -9.24 16 17 H 0.08 1.95 7.26 -52.49 -0.38 1.57 16 18 C 0.08 2.06 4.38 -17.46 -0.08 1.98 16 19 N -0.83 -23.51 11.74 55.50 0.65 -22.86 16 20 Si 0.91 21.45 29.59 -169.99 -5.03 16.42 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.07 1.40 5.87 -67.93 -0.40 1.00 16 25 C -0.17 -3.00 9.80 -26.73 -0.26 -3.26 16 26 C -0.21 -3.38 10.36 -26.73 -0.28 -3.65 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.95 8.58 -40.82 -0.35 4.60 16 37 H 0.11 2.65 5.51 -51.93 -0.29 2.36 16 38 H 0.06 1.30 6.16 -51.93 -0.32 0.98 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.31 6.17 -51.93 -0.32 0.99 16 42 H 0.10 2.25 5.51 -51.93 -0.29 1.96 16 43 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16 44 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 45 H 0.26 7.25 8.32 -40.82 -0.34 6.91 16 46 H 0.10 1.69 6.96 -51.93 -0.36 1.33 16 47 H 0.11 2.08 6.72 -51.93 -0.35 1.73 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -30.69 383.49 -7.52 -38.21 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.29 Total: 12.08 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.45 Total: 1.15 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.08 Total: -44.15 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.51 Total: -29.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.69 -7.52 -38.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739537131.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.330 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds