Wall clock time and date at job start Tue Mar 31 2020 14:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 C 1.53003 * 109.47365 * 240.00606 * 2 1 3 5 5 O 1.45194 * 109.47419 * 120.00230 * 2 1 3 6 6 C 1.34633 * 117.00380 * 59.99894 * 5 2 1 7 7 O 1.21514 * 119.99358 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00310 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99987 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47127 * 60.00329 * 9 8 6 11 11 C 1.53001 * 109.47528 * 300.00273 * 9 8 6 12 12 C 1.52997 * 109.47260 * 180.02562 * 9 8 6 13 13 C 1.50706 * 109.47287 * 180.02562 * 12 9 8 14 14 O 1.21288 * 119.99610 * 0.02562 * 13 12 9 15 15 N 1.34781 * 119.99933 * 180.02562 * 13 12 9 16 16 C 1.37091 * 119.99778 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99924 * 224.29666 * 16 15 13 18 18 C 1.38947 * 120.00628 * 44.28845 * 16 15 13 19 19 N 1.31423 * 119.99486 * 18.22611 * 18 16 15 20 20 Si 1.86794 * 120.00652 * 198.22332 * 18 16 15 21 21 H 1.48499 * 109.47114 * 90.00033 * 20 18 16 22 22 H 1.48499 * 109.47704 * 210.00305 * 20 18 16 23 23 H 1.48503 * 109.46892 * 330.00203 * 20 18 16 24 24 C 1.46497 * 119.99889 * 359.97438 * 15 13 12 25 25 C 1.53005 * 117.49710 * 183.22780 * 24 15 13 26 26 C 1.53000 * 117.49716 * 114.60668 * 24 15 13 27 27 H 1.08994 * 109.47362 * 299.99719 * 1 2 3 28 28 H 1.08995 * 109.47356 * 60.00001 * 1 2 3 29 29 H 1.09002 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46937 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47153 * 300.00124 * 3 2 1 32 32 H 1.08996 * 109.46675 * 60.00494 * 3 2 1 33 33 H 1.09002 * 109.46680 * 299.99453 * 4 2 1 34 34 H 1.08995 * 109.47379 * 59.99407 * 4 2 1 35 35 H 1.08997 * 109.47177 * 179.97438 * 4 2 1 36 36 H 0.96999 * 120.00426 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.47536 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47032 * 300.00419 * 10 9 8 39 39 H 1.09003 * 109.47008 * 59.99805 * 10 9 8 40 40 H 1.08991 * 109.46956 * 300.00308 * 11 9 8 41 41 H 1.08999 * 109.46577 * 59.99614 * 11 9 8 42 42 H 1.08999 * 109.47279 * 179.97438 * 11 9 8 43 43 H 1.09003 * 109.47178 * 300.00381 * 12 9 8 44 44 H 1.09002 * 109.47156 * 60.00248 * 12 9 8 45 45 H 0.97004 * 119.99606 * 174.93593 * 19 18 16 46 46 H 1.08998 * 115.55471 * 328.94035 * 24 15 13 47 47 H 1.09004 * 117.49452 * 0.02562 * 25 24 15 48 48 H 1.08994 * 117.49851 * 145.02329 * 25 24 15 49 49 H 1.08998 * 117.50232 * 214.97958 * 26 24 15 50 50 H 1.09005 * 117.50033 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5096 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.6741 -4.0668 2.5830 10 6 2.1874 -4.8855 1.3966 11 6 0.1485 -4.1635 2.6473 12 6 2.2744 -4.6149 3.8792 13 6 1.8695 -6.0565 4.0502 14 8 1.1701 -6.5928 3.2169 15 7 2.2847 -6.7496 5.1290 16 6 1.9168 -8.0611 5.2842 17 1 1.5801 -8.4172 6.2466 18 6 1.9769 -8.9322 4.2034 19 7 2.7024 -8.6251 3.1515 20 14 1.0267 -10.5399 4.2454 21 1 -0.3302 -10.3277 3.6807 22 1 1.7442 -11.5603 3.4397 23 1 0.9107 -11.0097 5.6493 24 6 3.1299 -6.1019 6.1350 25 6 3.6305 -6.9622 7.2970 26 6 2.5428 -5.9128 7.5352 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7207 -1.2495 36 1 2.6278 -2.2369 3.0827 37 1 1.8947 -5.9280 1.5207 38 1 1.7595 -4.4949 0.4734 39 1 3.2743 -4.8166 1.3509 40 1 -0.2171 -3.5803 3.4924 41 1 -0.2794 -3.7729 1.7240 42 1 -0.1447 -5.2060 2.7707 43 1 3.3613 -4.5460 3.8339 44 1 1.9083 -4.0317 4.7242 45 1 2.8038 -9.2642 2.4289 46 1 3.7964 -5.3253 5.7597 47 1 3.3312 -8.0102 7.3127 48 1 4.6265 -6.7519 7.6863 49 1 2.8233 -5.0121 8.0812 50 1 1.5275 -6.2699 7.7077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739537131.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:58 Heat of formation + Delta-G solvation = -94.788579 kcal Electronic energy + Delta-G solvation = -29949.501526 eV Core-core repulsion = 25977.966545 eV Total energy + Delta-G solvation = -3971.534981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93943 -40.69574 -39.07809 -37.79077 -36.53563 -35.14160 -34.65544 -32.86773 -32.40532 -29.39437 -28.34467 -28.24323 -28.12879 -26.55822 -24.27196 -23.10248 -22.75264 -21.74288 -20.83564 -20.40233 -19.17199 -18.13771 -17.73951 -17.34680 -17.07998 -16.85532 -16.05187 -16.04594 -15.77605 -15.55256 -15.35023 -15.09250 -14.65798 -14.57132 -14.48854 -14.21096 -13.71407 -13.29246 -13.26109 -13.08028 -13.04097 -12.87420 -12.85640 -12.82170 -12.66915 -12.60369 -12.45999 -12.32975 -12.26044 -12.05177 -12.04341 -11.91651 -11.82435 -11.51571 -11.28758 -11.14670 -10.81590 -10.64678 -10.14052 -9.71020 -8.86669 -8.14030 -5.91006 1.19258 1.38481 1.46696 1.50202 1.87306 2.29944 2.46731 3.03069 3.17779 3.32834 3.43099 3.73515 3.81510 3.84659 3.99679 4.02615 4.07303 4.19258 4.29398 4.36958 4.55323 4.56300 4.64814 4.64968 4.71439 4.78522 4.80257 4.86296 4.92346 4.92958 4.94658 4.95175 5.02642 5.06430 5.11894 5.18433 5.33148 5.34257 5.35465 5.42834 5.51976 5.54190 5.56051 5.58175 5.74690 6.26542 6.57531 7.11067 7.28299 7.48216 7.79053 8.45383 8.93218 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003236 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.766713 B = 8651.444906 C = 9548.540543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.648 3.352 7 O -0.584 6.584 8 N -0.693 5.693 9 C 0.224 3.776 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.123 4.123 13 C 0.478 3.522 14 O -0.561 6.561 15 N -0.445 5.445 16 C -0.351 4.351 17 H 0.073 0.927 18 C 0.029 3.971 19 N -0.864 5.864 20 Si 0.961 3.039 21 H -0.293 1.293 22 H -0.285 1.285 23 H -0.258 1.258 24 C 0.046 3.954 25 C -0.174 4.174 26 C -0.180 4.180 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.257 0.743 46 H 0.129 0.871 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.125 0.875 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 19.569 0.107 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.402 3.598 7 O -0.475 6.475 8 N -0.353 5.353 9 C 0.140 3.860 10 C -0.214 4.214 11 C -0.217 4.217 12 C -0.163 4.163 13 C 0.267 3.733 14 O -0.442 6.442 15 N -0.166 5.166 16 C -0.479 4.479 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.499 5.499 20 Si 0.788 3.212 21 H -0.220 1.220 22 H -0.211 1.211 23 H -0.182 1.182 24 C -0.059 4.059 25 C -0.212 4.212 26 C -0.219 4.219 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.066 0.934 46 H 0.146 0.854 47 H 0.097 0.903 48 H 0.133 0.867 49 H 0.143 0.857 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.686 19.055 -0.979 19.154 hybrid contribution -0.198 -1.265 -0.061 1.282 sum 1.488 17.790 -1.039 17.882 Atomic orbital electron populations 1.22465 0.94168 1.03544 1.03508 1.22388 0.94496 0.92791 0.81479 1.21868 1.02407 0.90398 1.04344 1.22476 1.01536 1.02167 0.97611 1.86298 1.71706 1.22987 1.47364 1.18192 0.78721 0.80667 0.82256 1.90859 1.41936 1.70568 1.44115 1.44864 1.55197 1.11688 1.23586 1.19608 0.94601 0.77358 0.94455 1.22245 0.99316 1.01855 0.98026 1.22276 0.94640 1.03308 1.01477 1.21702 1.02480 0.94541 0.97620 1.20155 0.82330 0.87607 0.83222 1.90414 1.40360 1.71296 1.42127 1.42962 1.44005 1.09240 1.20364 1.18981 1.46027 0.85706 0.97196 0.90888 1.25887 0.95540 1.00836 0.95546 1.69920 1.35701 1.35885 1.08396 0.85441 0.78362 0.78933 0.78472 1.21992 1.21053 1.18230 1.22036 0.98136 1.00518 0.85169 1.23097 0.99358 0.97139 1.01600 1.23319 0.97820 1.01384 0.99368 0.91857 0.89162 0.92318 0.91189 0.88007 0.91030 0.92391 0.89116 0.92080 0.74802 0.91090 0.92682 0.93961 0.92544 0.92480 0.91235 0.88410 0.87083 0.93367 0.85397 0.90324 0.86661 0.85732 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.13 -1.79 8.85 71.98 0.64 -1.15 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 5 O -0.37 -9.53 9.94 -55.42 -0.55 -10.08 16 6 C 0.65 19.99 7.48 129.79 0.97 20.96 16 7 O -0.58 -21.18 8.09 19.80 0.16 -21.02 16 8 N -0.69 -19.77 5.11 -550.33 -2.81 -22.58 16 9 C 0.22 7.94 0.80 3.60 0.00 7.95 16 10 C -0.16 -6.54 8.10 71.98 0.58 -5.95 16 11 C -0.16 -6.13 8.10 71.98 0.58 -5.54 16 12 C -0.12 -4.21 3.50 29.85 0.10 -4.11 16 13 C 0.48 22.50 6.38 87.66 0.56 23.06 16 14 O -0.56 -31.08 9.11 -3.06 -0.03 -31.11 16 15 N -0.44 -20.96 2.83 -613.13 -1.74 -22.70 16 16 C -0.35 -18.68 7.92 84.04 0.67 -18.02 16 17 H 0.07 3.81 7.26 -2.91 -0.02 3.79 16 18 C 0.03 1.59 4.38 84.92 0.37 1.96 16 19 N -0.86 -50.79 11.74 21.66 0.25 -50.54 16 20 Si 0.96 45.40 29.59 68.60 2.03 47.43 16 21 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.05 1.65 5.87 44.99 0.26 1.91 16 25 C -0.17 -5.63 9.80 30.60 0.30 -5.33 16 26 C -0.18 -5.27 10.36 30.60 0.32 -4.95 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.68 5.88 -2.39 -0.01 1.66 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 9.03 8.58 -92.71 -0.80 8.23 16 37 H 0.07 3.60 5.51 -2.39 -0.01 3.59 16 38 H 0.05 2.34 6.16 -2.39 -0.01 2.33 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 2.28 6.17 -2.39 -0.01 2.27 16 42 H 0.07 3.19 5.51 -2.39 -0.01 3.18 16 43 H 0.10 3.02 7.57 -2.39 -0.02 3.00 16 44 H 0.11 3.12 8.11 -2.39 -0.02 3.10 16 45 H 0.26 14.80 8.32 -92.71 -0.77 14.03 16 46 H 0.13 3.80 6.96 -2.39 -0.02 3.79 16 47 H 0.08 3.01 6.72 -2.38 -0.02 2.99 16 48 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -71.41 383.49 4.02 -67.40 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.15 Total: 36.34 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.55 Total: 6.87 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.29 Total: -95.82 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -0.42 Total: -62.21 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.41 4.02 -67.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739537131.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.392 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds