Wall clock time and date at job start Tue Mar 31 2020 14:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 C 1.53000 * 109.47246 * 239.99711 * 2 1 3 5 5 O 1.45202 * 109.47121 * 119.99853 * 2 1 3 6 6 C 1.34638 * 117.00140 * 59.99823 * 5 2 1 7 7 O 1.21510 * 119.99653 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00196 * 185.02054 * 8 6 5 10 10 C 1.50704 * 110.01660 * 54.41084 * 9 8 6 11 11 O 1.21281 * 119.99672 * 217.13897 * 10 9 8 12 12 N 1.34773 * 119.99846 * 37.13644 * 10 9 8 13 13 C 1.46500 * 119.99835 * 174.99952 * 12 10 9 14 14 C 1.53001 * 109.47286 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46949 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00473 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99592 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99637 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00015 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47283 * 90.00128 * 19 17 15 21 21 H 1.48504 * 109.46660 * 209.99695 * 19 17 15 22 22 H 1.48497 * 109.47277 * 329.99600 * 19 17 15 23 23 C 1.54260 * 110.03109 * 292.96530 * 9 8 6 24 24 C 1.54889 * 104.19817 * 264.32404 * 23 9 8 25 25 C 1.54884 * 102.74756 * 322.05571 * 24 23 9 26 26 C 1.53869 * 110.03322 * 175.79920 * 9 8 6 27 27 H 1.08999 * 109.46988 * 299.99764 * 1 2 3 28 28 H 1.09001 * 109.47058 * 60.00262 * 1 2 3 29 29 H 1.09007 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47039 * 299.99750 * 3 2 1 32 32 H 1.09001 * 109.47143 * 59.99754 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00175 * 4 2 1 34 34 H 1.09001 * 109.47070 * 60.00034 * 4 2 1 35 35 H 1.09000 * 109.46904 * 179.97438 * 4 2 1 36 36 H 0.97006 * 120.00061 * 5.02026 * 8 6 5 37 37 H 0.96997 * 120.00409 * 354.99612 * 12 10 9 38 38 H 1.09004 * 109.47159 * 300.00308 * 13 12 10 39 39 H 1.09003 * 109.47268 * 60.00172 * 13 12 10 40 40 H 1.08996 * 109.47038 * 300.00066 * 14 13 12 41 41 H 1.09003 * 109.46772 * 59.99935 * 14 13 12 42 42 H 0.97001 * 120.00220 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.48558 * 145.64626 * 23 9 8 44 44 H 1.08998 * 110.48740 * 23.00736 * 23 9 8 45 45 H 1.09005 * 110.75289 * 203.74181 * 24 23 9 46 46 H 1.08999 * 110.75590 * 80.37643 * 24 23 9 47 47 H 1.09003 * 110.48303 * 156.61699 * 25 24 23 48 48 H 1.08997 * 110.49279 * 279.13291 * 25 24 23 49 49 H 1.09005 * 110.03581 * 0.02562 * 26 9 8 50 50 H 1.08996 * 110.03540 * 238.56948 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0681 -2.6656 2.4167 9 6 1.7674 -4.0950 2.5291 10 6 2.2559 -4.8228 1.3032 11 8 1.6100 -5.7420 0.8462 12 7 3.4104 -4.4523 0.7149 13 6 3.9413 -5.2272 -0.4093 14 6 5.2508 -4.5982 -0.8892 15 6 5.7965 -5.3950 -2.0460 16 1 5.2626 -6.2631 -2.4035 17 6 6.9776 -5.0159 -2.6481 18 7 7.4541 -5.7116 -3.6573 19 14 7.9015 -3.5149 -2.0293 20 1 8.8609 -3.9250 -0.9725 21 1 8.6422 -2.8908 -3.1550 22 1 6.9361 -2.5357 -1.4686 23 6 0.2485 -4.3038 2.6988 24 6 0.0494 -4.4178 4.2306 25 6 1.2973 -5.2184 4.6787 26 6 2.4343 -4.6765 3.7880 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.5664 -2.2182 3.1185 37 1 3.8898 -3.6725 1.0357 38 1 4.1263 -6.2525 -0.0887 39 1 3.2181 -5.2266 -1.2249 40 1 5.0653 -3.5731 -1.2100 41 1 5.9742 -4.5985 -0.0739 42 1 8.2848 -5.4447 -4.0811 43 1 -0.0681 -5.2218 2.2036 44 1 -0.3005 -3.4482 2.3054 45 1 -0.8643 -4.9654 4.4617 46 1 0.0370 -3.4309 4.6931 47 1 1.5138 -5.0302 5.7303 48 1 1.1493 -6.2843 4.5054 49 1 2.9814 -3.8951 4.3156 50 1 3.1106 -5.4857 3.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752826217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:51 Heat of formation + Delta-G solvation = -133.401573 kcal Electronic energy + Delta-G solvation = -30210.258991 eV Core-core repulsion = 26237.049625 eV Total energy + Delta-G solvation = -3973.209366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26740 -39.91413 -37.68783 -36.71683 -34.99061 -34.41347 -33.48888 -32.67928 -30.22544 -28.98779 -28.30081 -27.53095 -27.38467 -24.96379 -22.98902 -21.99091 -21.11984 -20.73275 -19.94785 -19.30073 -18.18441 -17.58676 -16.89908 -16.39992 -16.12801 -15.86545 -15.53728 -14.77591 -14.69174 -14.60735 -14.32911 -14.16637 -13.76799 -13.56621 -13.42506 -13.06362 -12.64076 -12.60611 -12.50522 -12.24499 -12.02155 -11.93577 -11.87008 -11.59813 -11.50262 -11.42598 -11.40869 -11.35256 -11.19239 -11.13112 -10.79913 -10.42899 -10.37994 -10.25655 -10.01306 -10.00121 -9.89298 -9.34336 -8.96973 -8.62722 -8.47317 -6.10283 -4.09938 1.96649 2.76829 2.94546 3.24512 3.32319 3.34058 3.55629 3.97123 4.28279 4.33769 4.38092 4.62268 4.66872 4.68825 4.82005 5.04591 5.14285 5.21898 5.22612 5.24877 5.34433 5.43285 5.44120 5.50657 5.55716 5.57355 5.66708 5.70973 5.77648 5.82688 5.83423 5.90808 6.02186 6.12188 6.17883 6.21919 6.23919 6.29993 6.41584 6.46754 6.58411 6.81013 7.15128 7.24969 7.26627 7.67842 7.92732 8.31493 8.44852 8.59152 8.94429 9.50031 11.02854 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004690 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.557203 B = 5968.399960 C = 7988.645716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.140 4.140 4 C -0.186 4.186 5 O -0.365 6.365 6 C 0.646 3.354 7 O -0.545 6.545 8 N -0.706 5.706 9 C 0.174 3.826 10 C 0.518 3.482 11 O -0.533 6.533 12 N -0.720 5.720 13 C 0.131 3.869 14 C -0.020 4.020 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.406 0.594 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 12.790 17.784 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.101 3.899 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.280 6.280 6 C 0.400 3.600 7 O -0.432 6.432 8 N -0.369 5.369 9 C 0.086 3.914 10 C 0.301 3.699 11 O -0.409 6.409 12 N -0.369 5.369 13 C 0.009 3.991 14 C -0.058 4.058 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.158 4.158 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.243 0.757 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.666 11.877 16.790 24.692 hybrid contribution 1.200 1.473 0.506 1.966 sum -12.466 13.349 17.296 25.155 Atomic orbital electron populations 1.22509 0.94104 1.05082 1.02242 1.22089 0.94192 0.91414 0.82187 1.21860 1.02448 0.92532 1.02889 1.22534 1.02071 1.03687 0.96036 1.86279 1.71488 1.23582 1.46674 1.18128 0.79102 0.80652 0.82167 1.90989 1.39518 1.69900 1.42763 1.44986 1.60877 1.08862 1.22160 1.21269 0.97594 0.77683 0.94890 1.20260 0.81013 0.84248 0.84349 1.90670 1.55725 1.30911 1.63596 1.46202 1.23943 1.31565 1.35209 1.21499 0.96389 0.94559 0.86615 1.19771 0.91947 0.97002 0.97046 1.20913 1.07510 1.13389 1.14086 0.90613 1.24986 0.97034 0.96562 0.94600 1.69903 1.21256 1.39633 1.22883 0.86775 0.80133 0.83695 0.78630 1.20216 1.21238 1.19152 1.22699 0.92184 1.04619 0.96240 1.22529 0.98129 1.00078 0.95407 1.22359 0.94108 1.00573 0.98849 1.22400 0.98764 1.01377 0.93224 0.92431 0.91153 0.89314 0.91352 0.90134 0.91693 0.89051 0.91166 0.91811 0.75750 0.77500 0.92045 0.91915 0.96209 0.96616 0.92575 0.88427 0.90342 0.90974 0.91538 0.90966 0.90746 0.89897 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.50 16 3 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.19 -2.51 8.37 37.16 0.31 -2.20 16 5 O -0.37 -4.63 9.94 -40.32 -0.40 -5.03 16 6 C 0.65 8.91 6.90 54.05 0.37 9.29 16 7 O -0.54 -9.13 9.72 -19.28 -0.19 -9.32 16 8 N -0.71 -7.82 4.48 -52.51 -0.24 -8.06 16 9 C 0.17 2.17 0.86 -131.86 -0.11 2.05 16 10 C 0.52 9.00 4.96 -10.99 -0.05 8.95 16 11 O -0.53 -11.26 15.54 5.56 0.09 -11.18 16 12 N -0.72 -12.83 5.26 -60.29 -0.32 -13.15 16 13 C 0.13 2.83 5.62 -4.04 -0.02 2.81 16 14 C -0.02 -0.47 4.15 -27.88 -0.12 -0.59 16 15 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 16 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 23 C -0.12 -1.46 5.56 -25.08 -0.14 -1.60 16 24 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 25 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 26 C -0.12 -1.12 6.23 -25.61 -0.16 -1.28 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.19 5.88 -51.92 -0.31 0.88 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.52 5.88 -51.93 -0.31 1.21 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 3.24 8.19 -40.82 -0.33 2.91 16 37 H 0.39 6.24 7.72 -40.82 -0.32 5.93 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 1.43 6.79 -51.92 -0.35 1.08 16 44 H 0.08 1.05 6.80 -51.93 -0.35 0.69 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.56 7.45 -51.93 -0.39 0.17 16 50 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -34.18 390.30 -7.82 -42.00 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.60 Total: 8.30 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.16 Total: 0.72 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.22 Total: -48.01 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.50 Total: -25.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.18 -7.82 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752826217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.398 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds