Wall clock time and date at job start Tue Mar 31 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 C 1.53000 * 109.47246 * 239.99711 * 2 1 3 5 5 O 1.45202 * 109.47121 * 119.99853 * 2 1 3 6 6 C 1.34638 * 117.00140 * 59.99823 * 5 2 1 7 7 O 1.21510 * 119.99653 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00196 * 185.02054 * 8 6 5 10 10 C 1.50704 * 110.01660 * 54.41084 * 9 8 6 11 11 O 1.21281 * 119.99672 * 217.13897 * 10 9 8 12 12 N 1.34773 * 119.99846 * 37.13644 * 10 9 8 13 13 C 1.46500 * 119.99835 * 174.99952 * 12 10 9 14 14 C 1.53001 * 109.47286 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46949 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00473 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99592 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99637 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00015 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47283 * 90.00128 * 19 17 15 21 21 H 1.48504 * 109.46660 * 209.99695 * 19 17 15 22 22 H 1.48497 * 109.47277 * 329.99600 * 19 17 15 23 23 C 1.54260 * 110.03109 * 292.96530 * 9 8 6 24 24 C 1.54889 * 104.19817 * 264.32404 * 23 9 8 25 25 C 1.54884 * 102.74756 * 322.05571 * 24 23 9 26 26 C 1.53869 * 110.03322 * 175.79920 * 9 8 6 27 27 H 1.08999 * 109.46988 * 299.99764 * 1 2 3 28 28 H 1.09001 * 109.47058 * 60.00262 * 1 2 3 29 29 H 1.09007 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47039 * 299.99750 * 3 2 1 32 32 H 1.09001 * 109.47143 * 59.99754 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00175 * 4 2 1 34 34 H 1.09001 * 109.47070 * 60.00034 * 4 2 1 35 35 H 1.09000 * 109.46904 * 179.97438 * 4 2 1 36 36 H 0.97006 * 120.00061 * 5.02026 * 8 6 5 37 37 H 0.96997 * 120.00409 * 354.99612 * 12 10 9 38 38 H 1.09004 * 109.47159 * 300.00308 * 13 12 10 39 39 H 1.09003 * 109.47268 * 60.00172 * 13 12 10 40 40 H 1.08996 * 109.47038 * 300.00066 * 14 13 12 41 41 H 1.09003 * 109.46772 * 59.99935 * 14 13 12 42 42 H 0.97001 * 120.00220 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.48558 * 145.64626 * 23 9 8 44 44 H 1.08998 * 110.48740 * 23.00736 * 23 9 8 45 45 H 1.09005 * 110.75289 * 203.74181 * 24 23 9 46 46 H 1.08999 * 110.75590 * 80.37643 * 24 23 9 47 47 H 1.09003 * 110.48303 * 156.61699 * 25 24 23 48 48 H 1.08997 * 110.49279 * 279.13291 * 25 24 23 49 49 H 1.09005 * 110.03581 * 0.02562 * 26 9 8 50 50 H 1.08996 * 110.03540 * 238.56948 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0681 -2.6656 2.4167 9 6 1.7674 -4.0950 2.5291 10 6 2.2559 -4.8228 1.3032 11 8 1.6100 -5.7420 0.8462 12 7 3.4104 -4.4523 0.7149 13 6 3.9413 -5.2272 -0.4093 14 6 5.2508 -4.5982 -0.8892 15 6 5.7965 -5.3950 -2.0460 16 1 5.2626 -6.2631 -2.4035 17 6 6.9776 -5.0159 -2.6481 18 7 7.4541 -5.7116 -3.6573 19 14 7.9015 -3.5149 -2.0293 20 1 8.8609 -3.9250 -0.9725 21 1 8.6422 -2.8908 -3.1550 22 1 6.9361 -2.5357 -1.4686 23 6 0.2485 -4.3038 2.6988 24 6 0.0494 -4.4178 4.2306 25 6 1.2973 -5.2184 4.6787 26 6 2.4343 -4.6765 3.7880 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 2.5664 -2.2182 3.1185 37 1 3.8898 -3.6725 1.0357 38 1 4.1263 -6.2525 -0.0887 39 1 3.2181 -5.2266 -1.2249 40 1 5.0653 -3.5731 -1.2100 41 1 5.9742 -4.5985 -0.0739 42 1 8.2848 -5.4447 -4.0811 43 1 -0.0681 -5.2218 2.2036 44 1 -0.3005 -3.4482 2.3054 45 1 -0.8643 -4.9654 4.4617 46 1 0.0370 -3.4309 4.6931 47 1 1.5138 -5.0302 5.7303 48 1 1.1493 -6.2843 4.5054 49 1 2.9814 -3.8951 4.3156 50 1 3.1106 -5.4857 3.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752826217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:50 Heat of formation + Delta-G solvation = -158.443241 kcal Electronic energy + Delta-G solvation = -30211.344879 eV Core-core repulsion = 26237.049625 eV Total energy + Delta-G solvation = -3974.295254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36300 -41.06836 -38.91513 -37.71854 -36.70567 -35.45635 -34.88769 -34.27239 -32.09580 -29.85276 -29.34773 -28.38078 -28.28564 -26.84833 -23.96949 -23.38712 -22.57505 -21.93435 -20.87408 -20.56138 -19.17079 -19.07003 -18.77884 -17.42537 -17.22390 -16.86409 -16.83999 -16.31448 -16.16327 -15.87257 -15.66099 -15.33039 -15.05186 -14.82869 -14.62879 -14.48535 -14.18374 -13.47811 -13.39589 -13.34159 -13.18539 -13.09012 -12.92212 -12.87364 -12.84626 -12.57130 -12.35928 -12.29239 -12.25059 -12.20420 -12.10978 -11.93564 -11.82277 -11.60240 -11.50100 -11.39435 -11.21348 -11.07585 -10.82632 -10.23658 -10.10620 -8.33792 -6.41499 0.96379 1.34271 1.37511 1.48755 1.57160 1.70519 2.16425 2.32954 3.00583 3.04793 3.40392 3.41220 3.71932 3.74414 3.79211 3.93983 4.13730 4.27660 4.31701 4.33192 4.39501 4.47694 4.52464 4.59649 4.64430 4.65232 4.72813 4.76015 4.78608 4.83935 4.88814 4.93212 5.03820 5.06925 5.13680 5.19386 5.21583 5.27387 5.28337 5.30889 5.33161 5.37583 5.45490 5.55928 5.58718 6.17560 6.32197 6.49393 6.65469 7.15650 7.23023 7.31661 8.83134 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004690 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.557203 B = 5968.399960 C = 7988.645716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.134 4.134 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.641 3.359 7 O -0.580 6.580 8 N -0.688 5.688 9 C 0.183 3.817 10 C 0.512 3.488 11 O -0.578 6.578 12 N -0.712 5.712 13 C 0.147 3.853 14 C -0.007 4.007 15 C -0.540 4.540 16 H 0.028 0.972 17 C 0.008 3.992 18 N -0.948 5.948 19 Si 0.957 3.043 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.244 1.244 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.116 4.116 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.426 0.574 37 H 0.405 0.595 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.269 0.731 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.121 0.879 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 16.350 21.379 29.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 C -0.191 4.191 4 C -0.242 4.242 5 O -0.275 6.275 6 C 0.395 3.605 7 O -0.469 6.469 8 N -0.353 5.353 9 C 0.094 3.906 10 C 0.298 3.702 11 O -0.457 6.457 12 N -0.363 5.363 13 C 0.023 3.977 14 C -0.045 4.045 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.189 4.189 18 N -0.588 5.588 19 Si 0.779 3.221 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.167 1.167 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.154 4.154 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.266 0.734 37 H 0.240 0.760 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.123 0.877 48 H 0.081 0.919 49 H 0.140 0.860 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.927 15.470 20.442 28.711 hybrid contribution 0.884 0.265 -0.743 1.185 sum -12.043 15.735 19.699 27.941 Atomic orbital electron populations 1.22444 0.93615 1.03544 1.03787 1.22341 0.94726 0.92605 0.80889 1.21874 1.02369 0.90292 1.04559 1.22498 1.01353 1.02066 0.98239 1.86296 1.71342 1.22808 1.47045 1.18400 0.78814 0.81027 0.82307 1.91001 1.41039 1.70652 1.44161 1.44817 1.60394 1.08051 1.21993 1.21216 0.97882 0.77931 0.93561 1.21257 0.79952 0.83789 0.85234 1.90648 1.56781 1.33102 1.65170 1.45982 1.24453 1.31652 1.34183 1.21011 0.95039 0.94542 0.87079 1.19590 0.92787 0.96269 0.95811 1.21188 1.07822 1.12824 1.16000 0.95410 1.26044 0.97965 1.00410 0.94509 1.70069 1.22097 1.42017 1.24570 0.85565 0.78930 0.79094 0.78486 1.18391 1.20877 1.16723 1.22652 0.91784 1.02338 0.99168 1.22511 0.98955 1.01568 0.91956 1.22380 0.92983 0.99748 1.00320 1.22505 0.99140 1.02052 0.91750 0.90946 0.89524 0.92338 0.91463 0.88326 0.90186 0.92760 0.89491 0.92713 0.73381 0.75964 0.93185 0.95043 0.95587 0.94391 0.92196 0.91680 0.91789 0.90170 0.89387 0.87659 0.91855 0.86041 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 8.37 71.98 0.60 -3.02 16 2 C 0.13 2.84 1.13 -10.79 -0.01 2.83 16 3 C -0.13 -1.95 8.85 71.98 0.64 -1.31 16 4 C -0.18 -4.94 8.37 71.98 0.60 -4.34 16 5 O -0.36 -8.48 9.94 -55.47 -0.55 -9.03 16 6 C 0.64 17.15 6.90 129.79 0.90 18.05 16 7 O -0.58 -20.05 9.72 19.81 0.19 -19.86 16 8 N -0.69 -13.82 4.48 -550.45 -2.47 -16.29 16 9 C 0.18 4.37 0.86 3.58 0.00 4.37 16 10 C 0.51 18.23 4.96 87.66 0.43 18.66 16 11 O -0.58 -25.94 15.54 -3.03 -0.05 -25.98 16 12 N -0.71 -25.62 5.26 -463.05 -2.44 -28.06 16 13 C 0.15 6.61 5.62 86.38 0.49 7.10 16 14 C -0.01 -0.32 4.15 29.85 0.12 -0.20 16 15 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 16 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 17 C 0.01 0.48 5.47 84.66 0.46 0.94 16 18 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 19 Si 0.96 43.11 27.47 68.60 1.88 45.00 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 23 C -0.12 -2.96 5.56 31.67 0.18 -2.78 16 24 C -0.11 -1.65 6.91 31.88 0.22 -1.43 16 25 C -0.12 -1.51 6.83 31.67 0.22 -1.29 16 26 C -0.12 -1.83 6.23 31.32 0.20 -1.64 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.59 5.88 -2.38 -0.01 1.58 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.88 5.88 -2.39 -0.01 1.86 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.43 5.17 8.19 -92.70 -0.76 4.41 16 37 H 0.41 12.36 7.72 -92.71 -0.72 11.65 16 38 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 41 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 43 H 0.06 2.03 6.79 -2.38 -0.02 2.01 16 44 H 0.06 1.74 6.80 -2.39 -0.02 1.72 16 45 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.12 1.00 7.45 -2.38 -0.02 0.99 16 50 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 Total: -1.00 -80.75 390.30 1.58 -79.18 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.59 Total: 30.33 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.29 Total: 4.27 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -4.61 Total: -103.90 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.41 Total: -54.87 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -80.75 1.58 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752826217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.268 kcal (2) G-P(sol) polarization free energy of solvation -80.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds