Wall clock time and date at job start Tue Mar 31 2020 14:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34778 * 119.99731 * 2 1 4 4 O 1.21684 * 120.00107 * 179.97438 * 3 2 1 5 5 C 1.46372 * 119.99868 * 359.72417 * 3 2 1 6 6 H 1.08004 * 120.00500 * 359.97438 * 5 3 2 7 7 C 1.40058 * 119.99993 * 180.02562 * 5 3 2 8 8 N 1.30675 * 119.99581 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00142 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47098 * 90.00117 * 9 7 5 11 11 H 1.48496 * 109.47291 * 209.99706 * 9 7 5 12 12 H 1.48497 * 109.47256 * 329.99952 * 9 7 5 13 13 C 1.46498 * 120.00069 * 179.97438 * 2 1 3 14 14 C 1.52997 * 109.47090 * 125.76052 * 13 2 1 15 15 C 1.53002 * 109.47120 * 299.99771 * 14 13 2 16 16 C 1.52996 * 109.47359 * 300.00177 * 15 14 13 17 17 N 1.46496 * 109.47411 * 180.02562 * 16 15 14 18 18 C 1.34770 * 120.00043 * 84.99533 * 17 16 15 19 19 O 1.21505 * 120.00438 * 0.02562 * 18 17 16 20 20 O 1.34636 * 119.99901 * 179.97438 * 18 17 16 21 21 C 1.45200 * 117.00141 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.46940 * 60.00550 * 21 20 18 23 23 C 1.52996 * 109.47381 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.47296 * 300.00530 * 21 20 18 25 25 C 1.53004 * 109.46899 * 59.99741 * 16 15 14 26 26 C 1.52998 * 109.47411 * 5.75951 * 13 2 1 27 27 H 1.08999 * 109.46909 * 84.11024 * 1 2 3 28 28 H 1.08996 * 109.46644 * 204.10888 * 1 2 3 29 29 H 1.08994 * 109.47029 * 324.11478 * 1 2 3 30 30 H 0.97002 * 119.99409 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.46832 * 245.75817 * 13 2 1 32 32 H 1.09000 * 109.47271 * 60.00110 * 14 13 2 33 33 H 1.08999 * 109.47261 * 179.97438 * 14 13 2 34 34 H 1.09000 * 109.47094 * 180.02562 * 15 14 13 35 35 H 1.08999 * 109.46911 * 60.00448 * 15 14 13 36 36 H 1.09008 * 109.46757 * 300.00005 * 16 15 14 37 37 H 0.97000 * 119.99589 * 264.99809 * 17 16 15 38 38 H 1.09002 * 109.46850 * 59.99721 * 22 21 20 39 39 H 1.09001 * 109.46972 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46867 * 299.99597 * 22 21 20 41 41 H 1.09002 * 109.47282 * 60.00216 * 23 21 20 42 42 H 1.08998 * 109.47458 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47360 * 300.00235 * 23 21 20 44 44 H 1.08998 * 109.46963 * 59.99831 * 24 21 20 45 45 H 1.08998 * 109.46891 * 179.97438 * 24 21 20 46 46 H 1.09002 * 109.47049 * 299.99589 * 24 21 20 47 47 H 1.09001 * 109.46918 * 180.02562 * 25 16 15 48 48 H 1.08999 * 109.47305 * 60.00376 * 25 16 15 49 49 H 1.08999 * 109.47680 * 180.02562 * 26 13 2 50 50 H 1.09000 * 109.47025 * 300.00174 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 0.0005 5 6 1.4070 2.4348 -0.0061 6 1 0.3270 2.4348 -0.0110 7 6 2.1072 3.6478 -0.0066 8 7 3.4139 3.6478 -0.0012 9 14 1.1732 5.2654 -0.0152 10 1 0.9198 5.6981 1.3827 11 1 1.9786 6.2984 -0.7147 12 1 -0.1214 5.0859 -0.7201 13 6 2.1976 -1.2687 0.0006 14 6 3.1826 -1.2894 -1.1699 15 6 2.4147 -1.1445 -2.4853 16 6 1.4268 -2.3038 -2.6296 17 7 0.6920 -2.1654 -3.8894 18 6 1.2202 -2.6429 -5.0336 19 8 2.3057 -3.1887 -5.0203 20 8 0.5447 -2.5162 -6.1913 21 6 1.1744 -3.0532 -7.3843 22 6 1.4067 -4.5550 -7.2062 23 6 0.2648 -2.8170 -8.5916 24 6 2.5157 -2.3532 -7.6121 25 6 0.4418 -2.2831 -1.4590 26 6 1.2097 -2.4281 -0.1437 27 1 -0.3633 0.1055 -1.0222 28 1 -0.3632 -0.9380 0.4198 29 1 -0.3633 0.8326 0.6023 30 1 3.8989 4.4879 -0.0012 31 1 2.7447 -1.3719 0.9377 32 1 3.8865 -0.4635 -1.0672 33 1 3.7280 -2.2331 -1.1693 34 1 3.1165 -1.1597 -3.3193 35 1 1.8698 -0.2005 -2.4858 36 1 1.9719 -3.2478 -2.6292 37 1 -0.1747 -1.7300 -3.8999 38 1 0.4512 -5.0537 -7.0439 39 1 1.8799 -4.9581 -8.1016 40 1 2.0550 -4.7229 -6.3462 41 1 0.0996 -1.7471 -8.7183 42 1 0.7373 -3.2206 -9.4870 43 1 -0.6909 -3.3155 -8.4295 44 1 3.1639 -2.5211 -6.7521 45 1 2.9886 -2.7567 -8.5075 46 1 2.3502 -1.2833 -7.7390 47 1 -0.2618 -3.1093 -1.5616 48 1 -0.1033 -1.3391 -1.4594 49 1 1.7547 -3.3721 -0.1428 50 1 0.5080 -2.4133 0.6902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773259519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:11 Heat of formation + Delta-G solvation = -113.390661 kcal Electronic energy + Delta-G solvation = -29869.116237 eV Core-core repulsion = 25896.774609 eV Total energy + Delta-G solvation = -3972.341628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79839 -39.53018 -37.48179 -36.15635 -34.53743 -33.94652 -32.49695 -32.32298 -30.53900 -28.90549 -27.56866 -27.48799 -26.09043 -25.38753 -23.00285 -22.38584 -21.28113 -20.34569 -19.95559 -18.46367 -17.83261 -16.72941 -16.35518 -16.04487 -15.74165 -15.51415 -15.06489 -14.69603 -14.48718 -14.33642 -14.14600 -13.65434 -13.55722 -13.13425 -12.70311 -12.58247 -12.51579 -12.39240 -12.15252 -12.03073 -11.99989 -11.83299 -11.79367 -11.54382 -11.40548 -11.38668 -11.18423 -11.04948 -10.94673 -10.51334 -10.42706 -10.39419 -10.26828 -10.12094 -9.98995 -9.87199 -9.85672 -8.90748 -8.83062 -7.44897 -7.12402 -6.17188 -4.63080 2.22756 2.94644 3.12976 3.20419 3.22969 4.08156 4.16826 4.55439 4.57597 4.58280 4.62174 4.76757 4.91061 5.06864 5.26667 5.29473 5.38272 5.45534 5.52130 5.55034 5.61436 5.64773 5.73158 5.73778 5.75901 5.80337 5.82107 5.90768 5.94859 5.98421 6.14474 6.17911 6.19510 6.25872 6.30467 6.36960 6.44055 6.58153 6.62702 6.70866 6.78936 6.92066 7.20678 7.44854 7.54905 7.66029 8.17448 8.38590 8.48758 9.03660 9.46520 10.59533 10.79284 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003281 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.430811 B = 8530.762914 C = 9420.755640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.641 5.641 3 C 0.560 3.440 4 O -0.572 6.572 5 C -0.544 4.544 6 H 0.070 0.930 7 C 0.088 3.912 8 N -0.766 5.766 9 Si 0.904 3.096 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.161 3.839 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.166 3.834 17 N -0.704 5.704 18 C 0.649 3.351 19 O -0.569 6.569 20 O -0.368 6.368 21 C 0.136 3.864 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.185 4.185 25 C -0.146 4.146 26 C -0.118 4.118 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.403 0.597 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 -13.513 -11.046 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.381 5.381 3 C 0.366 3.634 4 O -0.455 6.455 5 C -0.581 4.581 6 H 0.088 0.912 7 C -0.132 4.132 8 N -0.395 5.395 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.190 1.190 13 C 0.056 3.944 14 C -0.172 4.172 15 C -0.157 4.157 16 C 0.064 3.936 17 N -0.361 5.361 18 C 0.402 3.598 19 O -0.459 6.459 20 O -0.283 6.283 21 C 0.100 3.900 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.242 4.242 25 C -0.183 4.183 26 C -0.157 4.157 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.114 0.886 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.359 -13.711 -11.125 19.129 hybrid contribution -0.935 0.992 -0.123 1.369 sum -8.295 -12.719 -11.248 18.897 Atomic orbital electron populations 1.21605 0.83066 1.00752 0.99315 1.47981 1.04612 1.05082 1.80394 1.18127 0.86929 0.82040 0.76324 1.90532 1.13987 1.86111 1.54840 1.21009 0.93616 0.89361 1.54065 0.91210 1.25718 0.94579 1.00205 0.92684 1.70018 1.06985 1.27160 1.35349 0.86440 0.80209 0.81729 0.78785 1.19809 1.20533 1.18959 1.20578 0.92114 0.84198 0.97491 1.21977 0.99153 1.02864 0.93178 1.21771 0.97714 0.98125 0.98044 1.21087 0.92646 1.00165 0.79738 1.44959 1.23909 1.61935 1.05303 1.18105 0.82524 0.78110 0.81025 1.90883 1.21100 1.47807 1.86077 1.86294 1.49879 1.76356 1.15798 1.22015 0.93082 0.93572 0.81375 1.22513 1.02996 0.94041 1.04420 1.21853 0.99610 1.03170 0.95111 1.22522 0.96908 1.00602 1.04140 1.22315 0.98120 1.04117 0.93791 1.21762 0.98670 0.98689 0.96545 0.94771 0.93022 0.91931 0.92197 0.92695 0.87785 0.93086 0.92554 0.90932 0.89832 0.76298 0.92345 0.91326 0.89288 0.91445 0.90288 0.91599 0.89214 0.91329 0.92101 0.92046 0.88575 0.91321 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 7.90 59.85 0.47 2.11 16 2 N -0.64 -13.53 2.28 -175.60 -0.40 -13.93 16 3 C 0.56 15.16 7.15 -12.99 -0.09 15.06 16 4 O -0.57 -17.55 12.73 5.20 0.07 -17.48 16 5 C -0.54 -14.80 8.73 -35.63 -0.31 -15.11 16 6 H 0.07 1.74 6.14 -52.48 -0.32 1.42 16 7 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 8 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 9 Si 0.90 19.85 29.56 -169.99 -5.02 14.83 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.16 2.96 3.05 -67.93 -0.21 2.75 16 14 C -0.13 -2.56 5.15 -26.73 -0.14 -2.70 16 15 C -0.12 -2.14 5.34 -26.73 -0.14 -2.28 16 16 C 0.17 2.42 2.45 -67.93 -0.17 2.25 16 17 N -0.70 -9.55 5.08 -58.73 -0.30 -9.85 16 18 C 0.65 9.70 8.02 54.05 0.43 10.13 16 19 O -0.57 -9.68 11.54 -19.28 -0.22 -9.90 16 20 O -0.37 -4.92 9.94 -40.31 -0.40 -5.32 16 21 C 0.14 1.52 1.13 -90.62 -0.10 1.41 16 22 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 23 C -0.14 -1.14 8.85 37.16 0.33 -0.82 16 24 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 25 C -0.15 -1.84 4.84 -26.73 -0.13 -1.97 16 26 C -0.12 -1.60 4.91 -26.73 -0.13 -1.73 16 27 H 0.03 0.55 6.49 -51.93 -0.34 0.21 16 28 H 0.05 0.71 5.25 -51.93 -0.27 0.43 16 29 H 0.06 1.13 6.46 -51.93 -0.34 0.79 16 30 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 31 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.10 2.50 5.76 -51.93 -0.30 2.20 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.50 7.47 -51.93 -0.39 1.11 16 36 H 0.08 1.28 7.58 -51.92 -0.39 0.88 16 37 H 0.40 4.64 8.71 -40.82 -0.36 4.29 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 1.27 3.94 -51.93 -0.20 1.07 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.07 0.88 6.68 -51.93 -0.35 0.54 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -33.48 376.27 -7.68 -41.17 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.07 Total: 8.72 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 0.34 Total: 8.01 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.04 Total: -45.68 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.56 Total: -32.70 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.48 -7.68 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773259519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.225 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds