Wall clock time and date at job start Tue Mar 31 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34778 * 119.99731 * 2 1 4 4 O 1.21684 * 120.00107 * 179.97438 * 3 2 1 5 5 C 1.46372 * 119.99868 * 359.72417 * 3 2 1 6 6 H 1.08004 * 120.00500 * 359.97438 * 5 3 2 7 7 C 1.40058 * 119.99993 * 180.02562 * 5 3 2 8 8 N 1.30675 * 119.99581 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00142 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47098 * 90.00117 * 9 7 5 11 11 H 1.48496 * 109.47291 * 209.99706 * 9 7 5 12 12 H 1.48497 * 109.47256 * 329.99952 * 9 7 5 13 13 C 1.46498 * 120.00069 * 179.97438 * 2 1 3 14 14 C 1.52997 * 109.47090 * 125.76052 * 13 2 1 15 15 C 1.53002 * 109.47120 * 299.99771 * 14 13 2 16 16 C 1.52996 * 109.47359 * 300.00177 * 15 14 13 17 17 N 1.46496 * 109.47411 * 180.02562 * 16 15 14 18 18 C 1.34770 * 120.00043 * 84.99533 * 17 16 15 19 19 O 1.21505 * 120.00438 * 0.02562 * 18 17 16 20 20 O 1.34636 * 119.99901 * 179.97438 * 18 17 16 21 21 C 1.45200 * 117.00141 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.46940 * 60.00550 * 21 20 18 23 23 C 1.52996 * 109.47381 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.47296 * 300.00530 * 21 20 18 25 25 C 1.53004 * 109.46899 * 59.99741 * 16 15 14 26 26 C 1.52998 * 109.47411 * 5.75951 * 13 2 1 27 27 H 1.08999 * 109.46909 * 84.11024 * 1 2 3 28 28 H 1.08996 * 109.46644 * 204.10888 * 1 2 3 29 29 H 1.08994 * 109.47029 * 324.11478 * 1 2 3 30 30 H 0.97002 * 119.99409 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.46832 * 245.75817 * 13 2 1 32 32 H 1.09000 * 109.47271 * 60.00110 * 14 13 2 33 33 H 1.08999 * 109.47261 * 179.97438 * 14 13 2 34 34 H 1.09000 * 109.47094 * 180.02562 * 15 14 13 35 35 H 1.08999 * 109.46911 * 60.00448 * 15 14 13 36 36 H 1.09008 * 109.46757 * 300.00005 * 16 15 14 37 37 H 0.97000 * 119.99589 * 264.99809 * 17 16 15 38 38 H 1.09002 * 109.46850 * 59.99721 * 22 21 20 39 39 H 1.09001 * 109.46972 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46867 * 299.99597 * 22 21 20 41 41 H 1.09002 * 109.47282 * 60.00216 * 23 21 20 42 42 H 1.08998 * 109.47458 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47360 * 300.00235 * 23 21 20 44 44 H 1.08998 * 109.46963 * 59.99831 * 24 21 20 45 45 H 1.08998 * 109.46891 * 179.97438 * 24 21 20 46 46 H 1.09002 * 109.47049 * 299.99589 * 24 21 20 47 47 H 1.09001 * 109.46918 * 180.02562 * 25 16 15 48 48 H 1.08999 * 109.47305 * 60.00376 * 25 16 15 49 49 H 1.08999 * 109.47680 * 180.02562 * 26 13 2 50 50 H 1.09000 * 109.47025 * 300.00174 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 0.0005 5 6 1.4070 2.4348 -0.0061 6 1 0.3270 2.4348 -0.0110 7 6 2.1072 3.6478 -0.0066 8 7 3.4139 3.6478 -0.0012 9 14 1.1732 5.2654 -0.0152 10 1 0.9198 5.6981 1.3827 11 1 1.9786 6.2984 -0.7147 12 1 -0.1214 5.0859 -0.7201 13 6 2.1976 -1.2687 0.0006 14 6 3.1826 -1.2894 -1.1699 15 6 2.4147 -1.1445 -2.4853 16 6 1.4268 -2.3038 -2.6296 17 7 0.6920 -2.1654 -3.8894 18 6 1.2202 -2.6429 -5.0336 19 8 2.3057 -3.1887 -5.0203 20 8 0.5447 -2.5162 -6.1913 21 6 1.1744 -3.0532 -7.3843 22 6 1.4067 -4.5550 -7.2062 23 6 0.2648 -2.8170 -8.5916 24 6 2.5157 -2.3532 -7.6121 25 6 0.4418 -2.2831 -1.4590 26 6 1.2097 -2.4281 -0.1437 27 1 -0.3633 0.1055 -1.0222 28 1 -0.3632 -0.9380 0.4198 29 1 -0.3633 0.8326 0.6023 30 1 3.8989 4.4879 -0.0012 31 1 2.7447 -1.3719 0.9377 32 1 3.8865 -0.4635 -1.0672 33 1 3.7280 -2.2331 -1.1693 34 1 3.1165 -1.1597 -3.3193 35 1 1.8698 -0.2005 -2.4858 36 1 1.9719 -3.2478 -2.6292 37 1 -0.1747 -1.7300 -3.8999 38 1 0.4512 -5.0537 -7.0439 39 1 1.8799 -4.9581 -8.1016 40 1 2.0550 -4.7229 -6.3462 41 1 0.0996 -1.7471 -8.7183 42 1 0.7373 -3.2206 -9.4870 43 1 -0.6909 -3.3155 -8.4295 44 1 3.1639 -2.5211 -6.7521 45 1 2.9886 -2.7567 -8.5075 46 1 2.3502 -1.2833 -7.7390 47 1 -0.2618 -3.1093 -1.5616 48 1 -0.1033 -1.3391 -1.4594 49 1 1.7547 -3.3721 -0.1428 50 1 0.5080 -2.4133 0.6902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773259519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:10 Heat of formation + Delta-G solvation = -136.522125 kcal Electronic energy + Delta-G solvation = -29870.119292 eV Core-core repulsion = 25896.774609 eV Total energy + Delta-G solvation = -3973.344683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92233 -40.95783 -38.83309 -37.69569 -35.90902 -35.04410 -34.57356 -33.79716 -31.90437 -30.30666 -28.36463 -28.28307 -28.08670 -26.88139 -24.24547 -23.72445 -22.69657 -21.77621 -21.07836 -19.93771 -19.05992 -18.30403 -17.75625 -17.47963 -17.14187 -16.94514 -16.36856 -16.20750 -15.85845 -15.54861 -15.38791 -14.98926 -14.66313 -14.49383 -14.32556 -13.88474 -13.70718 -13.47638 -13.32914 -13.21127 -13.12251 -13.04259 -12.90200 -12.84961 -12.81285 -12.73668 -12.53581 -12.49162 -12.33498 -12.16602 -12.00641 -11.93438 -11.61828 -11.39096 -11.28631 -11.23712 -11.05031 -10.88042 -10.15389 -9.51936 -8.89706 -8.21881 -6.76843 1.18613 1.39533 1.40744 1.55056 1.78738 2.25173 2.53271 2.93751 3.17007 3.68303 3.73099 3.76428 3.80171 3.83160 3.95660 4.06623 4.21842 4.28971 4.44297 4.48494 4.53794 4.55923 4.58536 4.61713 4.66895 4.76512 4.78476 4.84762 4.88496 4.89188 4.96850 5.05555 5.08637 5.13034 5.17266 5.24843 5.28500 5.29272 5.31649 5.36521 5.40714 5.49019 5.54936 5.63130 5.85745 6.23692 6.45316 6.56769 6.94120 7.37776 7.55203 8.57056 8.76671 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003281 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.430811 B = 8530.762914 C = 9420.755640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.639 5.639 3 C 0.543 3.457 4 O -0.622 6.622 5 C -0.569 4.569 6 H 0.090 0.910 7 C 0.028 3.972 8 N -0.823 5.823 9 Si 0.989 3.011 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.247 1.247 13 C 0.156 3.844 14 C -0.129 4.129 15 C -0.105 4.105 16 C 0.178 3.822 17 N -0.696 5.696 18 C 0.645 3.355 19 O -0.594 6.594 20 O -0.370 6.370 21 C 0.124 3.876 22 C -0.177 4.177 23 C -0.134 4.134 24 C -0.183 4.183 25 C -0.137 4.137 26 C -0.108 4.108 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.270 0.730 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.415 0.585 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -14.955 -11.956 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.376 5.376 3 C 0.348 3.652 4 O -0.509 6.509 5 C -0.605 4.605 6 H 0.108 0.892 7 C -0.186 4.186 8 N -0.453 5.453 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.171 1.171 13 C 0.052 3.948 14 C -0.168 4.168 15 C -0.144 4.144 16 C 0.075 3.925 17 N -0.355 5.355 18 C 0.398 3.602 19 O -0.485 6.485 20 O -0.284 6.284 21 C 0.087 3.913 22 C -0.234 4.234 23 C -0.191 4.191 24 C -0.240 4.240 25 C -0.174 4.174 26 C -0.145 4.145 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.119 0.881 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.164 -15.191 -12.043 22.370 hybrid contribution 0.304 1.366 0.106 1.403 sum -10.860 -13.825 -11.937 21.250 Atomic orbital electron populations 1.21867 0.80122 1.02678 1.00435 1.47789 1.06537 1.04506 1.78730 1.18477 0.86587 0.84071 0.76018 1.90507 1.16206 1.87451 1.56765 1.21544 0.94754 0.90079 1.54137 0.89200 1.26929 0.95407 1.04793 0.91482 1.70211 1.09434 1.28453 1.37243 0.85145 0.78938 0.75714 0.79302 1.18729 1.20388 1.17060 1.20728 0.93170 0.85086 0.95845 1.21822 0.98887 1.01452 0.94643 1.21598 0.97800 0.98608 0.96401 1.20886 0.92604 0.97801 0.81218 1.44841 1.24155 1.61731 1.04726 1.18302 0.82293 0.77895 0.81676 1.90884 1.22213 1.48872 1.86531 1.86309 1.49875 1.76398 1.15853 1.22418 0.93474 0.93867 0.81495 1.22454 1.03001 0.93713 1.04264 1.21878 0.99528 1.03426 0.94302 1.22495 0.97058 1.00615 1.03828 1.22283 0.97733 1.05599 0.91822 1.21736 0.98029 0.96827 0.97949 0.93346 0.88695 0.93052 0.92028 0.94682 0.93491 0.91081 0.95000 0.93916 0.89922 0.74880 0.91472 0.89076 0.92137 0.91590 0.87877 0.90738 0.92454 0.88849 0.92617 0.88078 0.88868 0.89037 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 7.90 127.77 1.01 3.91 16 2 N -0.64 -27.16 2.28 -827.69 -1.88 -29.05 16 3 C 0.54 30.71 7.15 86.36 0.62 31.33 16 4 O -0.62 -40.94 12.73 -4.30 -0.05 -41.00 16 5 C -0.57 -31.63 8.73 24.83 0.22 -31.41 16 6 H 0.09 4.45 6.14 -2.91 -0.02 4.44 16 7 C 0.03 1.59 5.50 85.31 0.47 2.06 16 8 N -0.82 -50.91 11.83 21.84 0.26 -50.65 16 9 Si 0.99 41.18 29.56 68.60 2.03 43.21 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 13 C 0.16 5.74 3.05 44.99 0.14 5.88 16 14 C -0.13 -5.24 5.15 30.59 0.16 -5.08 16 15 C -0.11 -3.97 5.34 30.59 0.16 -3.81 16 16 C 0.18 4.94 2.45 44.99 0.11 5.05 16 17 N -0.70 -17.96 5.08 -570.15 -2.90 -20.86 16 18 C 0.64 18.97 8.02 129.79 1.04 20.01 16 19 O -0.59 -20.51 11.54 19.82 0.23 -20.28 16 20 O -0.37 -9.48 9.94 -55.45 -0.55 -10.03 16 21 C 0.12 2.57 1.13 -10.79 -0.01 2.56 16 22 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 23 C -0.13 -1.83 8.85 71.98 0.64 -1.19 16 24 C -0.18 -4.14 8.37 71.98 0.60 -3.54 16 25 C -0.14 -2.94 4.84 30.60 0.15 -2.79 16 26 C -0.11 -2.54 4.91 30.59 0.15 -2.39 16 27 H 0.05 1.43 6.49 -2.39 -0.02 1.41 16 28 H 0.09 2.19 5.25 -2.39 -0.01 2.17 16 29 H 0.05 1.75 6.46 -2.39 -0.02 1.74 16 30 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 2.46 5.76 -2.39 -0.01 2.45 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.84 7.47 -2.39 -0.02 1.83 16 36 H 0.08 2.39 7.58 -2.38 -0.02 2.37 16 37 H 0.41 8.67 8.71 -92.71 -0.81 7.86 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 2.11 3.94 -2.39 -0.01 2.10 16 49 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.10 1.88 6.68 -2.39 -0.02 1.87 16 Total: -1.00 -80.98 376.27 3.32 -77.66 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.15 Total: 33.23 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.05 Total: 17.76 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.52 Total: -100.56 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -0.38 Total: -71.31 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -80.98 3.32 -77.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773259519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.864 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds