Wall clock time and date at job start Tue Mar 31 2020 15:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 H 1.09001 * 109.49367 * 54.94131 * 3 2 1 5 5 C 1.53193 * 109.52669 * 294.85732 * 3 2 1 6 6 N 1.46922 * 108.77513 * 185.39831 * 5 3 2 7 7 C 1.34785 * 120.62948 * 233.63373 * 6 5 3 8 8 O 1.21690 * 119.99832 * 354.73306 * 7 6 5 9 9 C 1.46372 * 120.00030 * 174.73689 * 7 6 5 10 10 H 1.08001 * 120.00026 * 5.67848 * 9 7 6 11 11 C 1.40054 * 120.00012 * 185.67934 * 9 7 6 12 12 N 1.30666 * 119.99784 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99834 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46946 * 90.00192 * 13 11 9 15 15 H 1.48503 * 109.47083 * 209.99991 * 13 11 9 16 16 H 1.48499 * 109.47404 * 330.00268 * 13 11 9 17 17 C 1.46927 * 118.73970 * 53.60705 * 6 5 3 18 18 C 1.53188 * 108.77745 * 306.39309 * 17 6 5 19 19 C 1.53041 * 109.31375 * 54.63277 * 18 17 6 20 20 H 1.08999 * 109.44914 * 178.62396 * 19 18 17 21 21 N 1.46499 * 109.45626 * 58.65584 * 19 18 17 22 22 C 1.34773 * 120.00153 * 84.65902 * 21 19 18 23 23 O 1.21511 * 119.99825 * 0.27106 * 22 21 19 24 24 O 1.34636 * 120.00600 * 180.27412 * 22 21 19 25 25 C 1.45192 * 117.00649 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47270 * 59.99589 * 25 24 22 27 27 C 1.53000 * 109.47297 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47010 * 299.99972 * 25 24 22 29 29 H 1.08999 * 109.47482 * 59.99171 * 1 2 3 30 30 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46608 * 299.99742 * 1 2 3 32 32 H 1.09010 * 109.46608 * 240.00258 * 2 1 3 33 33 H 1.08999 * 109.47482 * 120.00829 * 2 1 3 34 34 H 1.08995 * 109.58484 * 305.18860 * 5 3 2 35 35 H 1.09005 * 109.58164 * 65.46660 * 5 3 2 36 36 H 0.96995 * 120.00120 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58693 * 66.18296 * 17 6 5 38 38 H 1.09001 * 109.58303 * 186.60601 * 17 6 5 39 39 H 1.09003 * 109.50031 * 294.68202 * 18 17 6 40 40 H 1.08997 * 109.49817 * 174.58394 * 18 17 6 41 41 H 0.97005 * 119.99881 * 264.93065 * 21 19 18 42 42 H 1.09002 * 109.47087 * 59.99982 * 26 25 24 43 43 H 1.08999 * 109.47350 * 180.02562 * 26 25 24 44 44 H 1.09006 * 109.47214 * 300.00300 * 26 25 24 45 45 H 1.08994 * 109.47493 * 59.99700 * 27 25 24 46 46 H 1.08999 * 109.46918 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.47073 * 299.99463 * 27 25 24 48 48 H 1.09000 * 109.46985 * 59.99480 * 28 25 24 49 49 H 1.08999 * 109.47764 * 180.02562 * 28 25 24 50 50 H 1.09002 * 109.47152 * 299.99728 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6049 1.9821 0.8411 5 6 1.6386 2.1275 -1.3101 6 7 2.2452 3.4651 -1.3495 7 6 1.4857 4.5575 -1.5653 8 8 0.3031 4.4347 -1.8248 9 6 2.0834 5.8914 -1.4876 10 1 3.1490 5.9984 -1.3486 11 6 1.2733 7.0289 -1.5935 12 7 -0.0160 6.8994 -1.7622 13 14 2.0359 8.7312 -1.4936 14 1 2.4196 9.1823 -2.8554 15 1 1.0516 9.6815 -0.9164 16 1 3.2429 8.6830 -0.6298 17 6 3.6953 3.5893 -1.1486 18 6 4.0738 2.8879 0.1596 19 6 3.5653 1.4448 0.1257 20 1 3.8547 0.9363 1.0453 21 7 4.1508 0.7480 -1.0223 22 6 5.3714 0.1861 -0.9188 23 8 5.9842 0.2531 0.1283 24 8 5.9118 -0.4495 -1.9755 25 6 7.2293 -1.0314 -1.7917 26 6 7.1758 -2.0707 -0.6702 27 6 7.6751 -1.7050 -3.0911 28 6 8.2255 0.0688 -1.4203 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9964 1.5389 -2.1548 35 1 0.5531 2.2146 -1.3591 36 1 -0.5770 7.6872 -1.8359 37 1 4.2210 3.1201 -1.9801 38 1 3.9671 4.6433 -1.0899 39 1 3.6195 3.4140 0.9993 40 1 5.1579 2.8890 0.2726 41 1 3.6615 0.6945 -1.8583 42 1 6.4661 -2.8546 -0.9347 43 1 8.1650 -2.5073 -0.5319 44 1 6.8584 -1.5905 0.2555 45 1 7.7133 -0.9643 -3.8898 46 1 8.6644 -2.1414 -2.9532 47 1 6.9656 -2.4888 -3.3561 48 1 7.9080 0.5491 -0.4947 49 1 9.2146 -0.3678 -1.2827 50 1 8.2636 0.8093 -2.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773500617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:00 Heat of formation + Delta-G solvation = -130.031200 kcal Electronic energy + Delta-G solvation = -29917.058529 eV Core-core repulsion = 25943.995314 eV Total energy + Delta-G solvation = -3973.063216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86811 -39.36517 -37.22782 -36.20303 -34.29117 -33.86721 -33.31977 -32.50800 -30.29368 -29.03713 -27.56958 -27.50427 -26.53030 -24.34693 -23.79918 -22.79946 -20.92528 -20.11342 -19.93986 -18.67261 -18.26807 -16.65403 -16.43739 -16.14653 -15.72508 -15.18835 -14.93004 -14.71605 -14.51042 -14.33372 -14.00899 -13.75663 -13.57569 -13.42596 -13.08813 -12.73741 -12.63885 -12.36712 -12.28162 -12.09728 -12.02946 -11.98705 -11.81714 -11.62115 -11.40154 -11.37740 -11.23528 -11.17529 -10.88737 -10.81790 -10.55552 -10.51972 -10.42530 -10.24528 -10.00976 -9.96204 -9.94357 -8.94777 -8.87623 -7.61152 -7.25480 -6.22565 -4.67024 2.24436 2.94432 3.12214 3.19576 3.22257 4.05869 4.19549 4.49929 4.52714 4.57762 4.61793 4.75757 4.76874 5.03296 5.08535 5.29175 5.37023 5.37692 5.46782 5.50719 5.51952 5.59421 5.61942 5.65114 5.67840 5.71739 5.78143 5.81723 5.90089 5.97349 6.03611 6.09799 6.14820 6.18592 6.23315 6.27074 6.32655 6.44942 6.50772 6.53896 6.58912 6.60814 6.75611 7.43712 7.55185 7.59169 8.11042 8.31852 8.48659 9.00016 9.39509 10.54495 10.73051 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.003470 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.836995 B = 8066.588048 C = 9334.184715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.111 4.111 4 H 0.091 0.909 5 C 0.126 3.874 6 N -0.642 5.642 7 C 0.560 3.440 8 O -0.577 6.577 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.905 3.095 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 C 0.124 3.876 18 C -0.148 4.148 19 C 0.173 3.827 20 H 0.086 0.914 21 N -0.697 5.697 22 C 0.650 3.350 23 O -0.573 6.573 24 O -0.367 6.367 25 C 0.137 3.863 26 C -0.182 4.182 27 C -0.141 4.141 28 C -0.184 4.184 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.405 0.595 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 -15.780 1.548 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.131 4.131 4 H 0.109 0.891 5 C 0.001 3.999 6 N -0.380 5.380 7 C 0.366 3.634 8 O -0.460 6.460 9 C -0.581 4.581 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.730 3.270 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.001 4.001 18 C -0.188 4.188 19 C 0.070 3.930 20 H 0.104 0.896 21 N -0.356 5.356 22 C 0.403 3.597 23 O -0.463 6.463 24 O -0.282 6.282 25 C 0.100 3.900 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.241 4.241 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.241 0.759 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.890 -15.744 1.863 19.817 hybrid contribution 0.387 0.776 -0.276 0.910 sum 12.277 -14.968 1.588 19.424 Atomic orbital electron populations 1.21815 0.95505 1.01115 1.02712 1.21493 0.96191 0.95692 1.01717 1.21930 0.93225 0.96559 1.01386 0.89071 1.21160 1.00547 0.84793 0.93354 1.48205 1.06511 1.05455 1.77781 1.18233 0.85366 0.83353 0.76407 1.90592 1.16437 1.85789 1.53180 1.20978 0.94736 0.89167 1.53187 0.90935 1.25718 0.94425 1.00430 0.92590 1.70004 1.04544 1.30351 1.34736 0.86409 0.79608 0.81978 0.79022 1.19733 1.20460 1.18864 1.21374 0.82766 1.01712 0.94245 1.22377 1.01022 0.94954 1.00415 1.20983 0.92236 0.92294 0.87489 0.89601 1.44974 1.16047 1.57173 1.17447 1.18096 0.82209 0.77319 0.82038 1.90869 1.61770 1.64372 1.29293 1.86307 1.34980 1.67452 1.39473 1.22001 0.78660 0.92842 0.96504 1.22510 1.02569 0.98578 1.00298 1.21855 1.01485 1.00861 0.95598 1.22515 0.98611 0.98727 1.04215 0.91934 0.93174 0.92627 0.92160 0.92187 0.94530 0.89127 0.92093 0.94220 0.88773 0.90336 0.91248 0.75894 0.92331 0.91394 0.89288 0.91445 0.90332 0.91571 0.89223 0.91413 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.11 -1.37 5.19 -26.73 -0.14 -1.50 16 3 C -0.11 -1.61 2.13 -90.50 -0.19 -1.80 16 4 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 5 C 0.13 2.27 5.02 -3.71 -0.02 2.25 16 6 N -0.64 -13.80 2.97 -174.43 -0.52 -14.32 16 7 C 0.56 15.42 7.61 -12.98 -0.10 15.32 16 8 O -0.58 -18.11 14.48 5.20 0.08 -18.04 16 9 C -0.54 -14.89 8.88 -35.63 -0.32 -15.21 16 10 H 0.07 1.82 5.64 -52.49 -0.30 1.52 16 11 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 12 N -0.77 -22.58 11.84 55.55 0.66 -21.93 16 13 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 17 C 0.12 2.25 6.09 -3.71 -0.02 2.23 16 18 C -0.15 -2.31 5.77 -26.61 -0.15 -2.46 16 19 C 0.17 2.44 2.21 -67.89 -0.15 2.29 16 20 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 21 N -0.70 -9.35 3.68 -58.69 -0.22 -9.56 16 22 C 0.65 9.20 8.02 54.05 0.43 9.63 16 23 O -0.57 -8.99 11.55 -19.28 -0.22 -9.21 16 24 O -0.37 -4.76 9.94 -40.31 -0.40 -5.16 16 25 C 0.14 1.45 1.13 -90.62 -0.10 1.35 16 26 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 27 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 28 C -0.18 -1.94 8.37 37.16 0.31 -1.62 16 29 H 0.06 0.84 6.70 -51.93 -0.35 0.49 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.06 0.70 7.70 -51.92 -0.40 0.30 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.60 6.64 -51.93 -0.34 0.25 16 35 H 0.09 1.87 5.76 -51.93 -0.30 1.57 16 36 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 37 H 0.04 0.69 7.74 -51.93 -0.40 0.28 16 38 H 0.09 1.84 5.30 -51.93 -0.28 1.57 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.40 5.25 6.86 -40.82 -0.28 4.97 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -33.01 383.98 -7.69 -40.70 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.28 Total: 7.99 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 0.45 Total: 8.95 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.08 Total: -45.81 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.55 Total: -32.41 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.01 -7.69 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773500617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.331 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds