Wall clock time and date at job start Tue Mar 31 2020 15:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 H 1.09001 * 109.49367 * 54.94131 * 3 2 1 5 5 C 1.53193 * 109.52669 * 294.85732 * 3 2 1 6 6 N 1.46922 * 108.77513 * 185.39831 * 5 3 2 7 7 C 1.34785 * 120.62948 * 233.63373 * 6 5 3 8 8 O 1.21690 * 119.99832 * 354.73306 * 7 6 5 9 9 C 1.46372 * 120.00030 * 174.73689 * 7 6 5 10 10 H 1.08001 * 120.00026 * 5.67848 * 9 7 6 11 11 C 1.40054 * 120.00012 * 185.67934 * 9 7 6 12 12 N 1.30666 * 119.99784 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99834 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46946 * 90.00192 * 13 11 9 15 15 H 1.48503 * 109.47083 * 209.99991 * 13 11 9 16 16 H 1.48499 * 109.47404 * 330.00268 * 13 11 9 17 17 C 1.46927 * 118.73970 * 53.60705 * 6 5 3 18 18 C 1.53188 * 108.77745 * 306.39309 * 17 6 5 19 19 C 1.53041 * 109.31375 * 54.63277 * 18 17 6 20 20 H 1.08999 * 109.44914 * 178.62396 * 19 18 17 21 21 N 1.46499 * 109.45626 * 58.65584 * 19 18 17 22 22 C 1.34773 * 120.00153 * 84.65902 * 21 19 18 23 23 O 1.21511 * 119.99825 * 0.27106 * 22 21 19 24 24 O 1.34636 * 120.00600 * 180.27412 * 22 21 19 25 25 C 1.45192 * 117.00649 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47270 * 59.99589 * 25 24 22 27 27 C 1.53000 * 109.47297 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47010 * 299.99972 * 25 24 22 29 29 H 1.08999 * 109.47482 * 59.99171 * 1 2 3 30 30 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46608 * 299.99742 * 1 2 3 32 32 H 1.09010 * 109.46608 * 240.00258 * 2 1 3 33 33 H 1.08999 * 109.47482 * 120.00829 * 2 1 3 34 34 H 1.08995 * 109.58484 * 305.18860 * 5 3 2 35 35 H 1.09005 * 109.58164 * 65.46660 * 5 3 2 36 36 H 0.96995 * 120.00120 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58693 * 66.18296 * 17 6 5 38 38 H 1.09001 * 109.58303 * 186.60601 * 17 6 5 39 39 H 1.09003 * 109.50031 * 294.68202 * 18 17 6 40 40 H 1.08997 * 109.49817 * 174.58394 * 18 17 6 41 41 H 0.97005 * 119.99881 * 264.93065 * 21 19 18 42 42 H 1.09002 * 109.47087 * 59.99982 * 26 25 24 43 43 H 1.08999 * 109.47350 * 180.02562 * 26 25 24 44 44 H 1.09006 * 109.47214 * 300.00300 * 26 25 24 45 45 H 1.08994 * 109.47493 * 59.99700 * 27 25 24 46 46 H 1.08999 * 109.46918 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.47073 * 299.99463 * 27 25 24 48 48 H 1.09000 * 109.46985 * 59.99480 * 28 25 24 49 49 H 1.08999 * 109.47764 * 180.02562 * 28 25 24 50 50 H 1.09002 * 109.47152 * 299.99728 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6049 1.9821 0.8411 5 6 1.6386 2.1275 -1.3101 6 7 2.2452 3.4651 -1.3495 7 6 1.4857 4.5575 -1.5653 8 8 0.3031 4.4347 -1.8248 9 6 2.0834 5.8914 -1.4876 10 1 3.1490 5.9984 -1.3486 11 6 1.2733 7.0289 -1.5935 12 7 -0.0160 6.8994 -1.7622 13 14 2.0359 8.7312 -1.4936 14 1 2.4196 9.1823 -2.8554 15 1 1.0516 9.6815 -0.9164 16 1 3.2429 8.6830 -0.6298 17 6 3.6953 3.5893 -1.1486 18 6 4.0738 2.8879 0.1596 19 6 3.5653 1.4448 0.1257 20 1 3.8547 0.9363 1.0453 21 7 4.1508 0.7480 -1.0223 22 6 5.3714 0.1861 -0.9188 23 8 5.9842 0.2531 0.1283 24 8 5.9118 -0.4495 -1.9755 25 6 7.2293 -1.0314 -1.7917 26 6 7.1758 -2.0707 -0.6702 27 6 7.6751 -1.7050 -3.0911 28 6 8.2255 0.0688 -1.4203 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9964 1.5389 -2.1548 35 1 0.5531 2.2146 -1.3591 36 1 -0.5770 7.6872 -1.8359 37 1 4.2210 3.1201 -1.9801 38 1 3.9671 4.6433 -1.0899 39 1 3.6195 3.4140 0.9993 40 1 5.1579 2.8890 0.2726 41 1 3.6615 0.6945 -1.8583 42 1 6.4661 -2.8546 -0.9347 43 1 8.1650 -2.5073 -0.5319 44 1 6.8584 -1.5905 0.2555 45 1 7.7133 -0.9643 -3.8898 46 1 8.6644 -2.1414 -2.9532 47 1 6.9656 -2.4888 -3.3561 48 1 7.9080 0.5491 -0.4947 49 1 9.2146 -0.3678 -1.2827 50 1 8.2636 0.8093 -2.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773500617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:59 Heat of formation + Delta-G solvation = -151.186689 kcal Electronic energy + Delta-G solvation = -29917.975900 eV Core-core repulsion = 25943.995314 eV Total energy + Delta-G solvation = -3973.980586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96021 -40.71186 -38.77237 -37.58258 -35.36222 -35.23766 -34.73855 -34.38419 -31.71742 -30.38753 -28.43206 -28.29609 -28.24336 -25.94301 -25.08280 -23.92936 -22.15753 -21.64343 -21.08187 -20.10647 -19.29484 -18.42353 -17.77089 -17.45808 -17.15594 -16.47546 -16.29476 -16.16760 -15.66055 -15.56605 -15.26366 -15.05157 -14.79771 -14.48627 -14.37340 -14.30107 -13.91177 -13.63878 -13.28368 -13.24004 -13.10207 -13.04861 -12.89373 -12.82705 -12.80413 -12.61379 -12.57866 -12.41399 -12.34979 -12.22267 -12.04424 -11.88108 -11.67909 -11.53734 -11.33604 -11.29983 -11.02311 -10.92400 -10.12808 -9.75078 -9.06081 -8.28150 -6.81855 1.23751 1.40005 1.40649 1.55522 1.85143 2.23698 2.47372 2.82119 3.20506 3.53560 3.59788 3.81148 3.81746 3.86861 3.92967 4.00972 4.17018 4.28044 4.31819 4.41866 4.45616 4.58560 4.62846 4.67265 4.68741 4.77628 4.82306 4.88216 4.90820 4.93351 4.94328 4.95301 5.00803 5.05418 5.12550 5.15773 5.24666 5.27191 5.34757 5.37123 5.41057 5.45178 5.48319 5.64286 5.78622 6.15281 6.41542 6.47035 6.89919 7.41112 7.42459 8.48605 8.68555 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.003470 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.836995 B = 8066.588048 C = 9334.184715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.098 4.098 4 H 0.077 0.923 5 C 0.126 3.874 6 N -0.641 5.641 7 C 0.544 3.456 8 O -0.629 6.629 9 C -0.569 4.569 10 H 0.091 0.909 11 C 0.031 3.969 12 N -0.821 5.821 13 Si 0.991 3.009 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.249 1.249 17 C 0.125 3.875 18 C -0.139 4.139 19 C 0.184 3.816 20 H 0.095 0.905 21 N -0.693 5.693 22 C 0.651 3.349 23 O -0.589 6.589 24 O -0.372 6.372 25 C 0.124 3.876 26 C -0.177 4.177 27 C -0.136 4.136 28 C -0.180 4.180 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.273 0.727 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.408 0.592 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.028 -16.904 1.699 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.118 4.118 4 H 0.096 0.904 5 C 0.002 3.998 6 N -0.377 5.377 7 C 0.350 3.650 8 O -0.516 6.516 9 C -0.606 4.606 10 H 0.109 0.891 11 C -0.184 4.184 12 N -0.451 5.451 13 Si 0.810 3.190 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.172 1.172 17 C 0.001 3.999 18 C -0.178 4.178 19 C 0.080 3.920 20 H 0.113 0.887 21 N -0.352 5.352 22 C 0.405 3.595 23 O -0.480 6.480 24 O -0.287 6.287 25 C 0.088 3.912 26 C -0.235 4.235 27 C -0.193 4.193 28 C -0.237 4.237 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.587 -16.923 2.016 22.433 hybrid contribution -0.379 1.018 -0.349 1.140 sum 14.208 -15.905 1.668 21.392 Atomic orbital electron populations 1.21802 0.95700 1.02120 1.01448 1.21446 0.95911 0.93779 1.03061 1.21775 0.93694 0.97746 0.98565 0.90449 1.21285 0.98646 0.83593 0.96236 1.48014 1.07639 1.05572 1.76498 1.18567 0.85137 0.85109 0.76166 1.90544 1.18650 1.86974 1.55468 1.21495 0.95878 0.89820 1.53380 0.89131 1.26916 0.94698 1.05440 0.91345 1.70174 1.06635 1.32088 1.36194 0.85119 0.78929 0.75380 0.79539 1.18807 1.19881 1.17201 1.21453 0.80670 1.01470 0.96270 1.22274 1.01514 0.95595 0.98443 1.20810 0.91491 0.91443 0.88242 0.88678 1.44860 1.16098 1.57030 1.17256 1.18144 0.82090 0.77213 0.82096 1.90874 1.62159 1.64917 1.30004 1.86322 1.36223 1.67242 1.38933 1.22393 0.77563 0.93007 0.98217 1.22456 1.03934 0.98281 0.98793 1.21884 1.02783 1.00703 0.93963 1.22477 0.99816 0.98743 1.02709 0.93912 0.90992 0.93255 0.91069 0.90439 0.92510 0.92242 0.91694 0.92861 0.90211 0.90925 0.90279 0.75554 0.91967 0.89169 0.91759 0.91599 0.87913 0.91213 0.91765 0.89098 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.67 71.98 0.70 -2.95 16 2 C -0.10 -2.35 5.19 30.59 0.16 -2.19 16 3 C -0.10 -2.79 2.13 -10.72 -0.02 -2.81 16 4 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 5 C 0.13 4.62 5.02 86.36 0.43 5.05 16 6 N -0.64 -28.19 2.97 -824.00 -2.45 -30.64 16 7 C 0.54 31.11 7.61 86.36 0.66 31.77 16 8 O -0.63 -41.59 14.48 -4.32 -0.06 -41.65 16 9 C -0.57 -31.82 8.88 24.83 0.22 -31.60 16 10 H 0.09 4.56 5.64 -2.91 -0.02 4.54 16 11 C 0.03 1.72 5.50 85.31 0.47 2.19 16 12 N -0.82 -50.03 11.84 21.84 0.26 -49.77 16 13 Si 0.99 40.85 29.56 68.60 2.03 42.88 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 17 C 0.12 4.51 6.09 86.36 0.53 5.04 16 18 C -0.14 -4.19 5.77 30.67 0.18 -4.01 16 19 C 0.18 4.91 2.21 45.02 0.10 5.01 16 20 H 0.10 2.49 7.58 -2.39 -0.02 2.47 16 21 N -0.69 -17.40 3.68 -570.00 -2.10 -19.50 16 22 C 0.65 17.33 8.02 129.79 1.04 18.38 16 23 O -0.59 -17.64 11.55 19.80 0.23 -17.41 16 24 O -0.37 -8.98 9.94 -55.46 -0.55 -9.53 16 25 C 0.12 2.36 1.13 -10.79 -0.01 2.35 16 26 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 27 C -0.14 -1.77 8.85 71.98 0.64 -1.13 16 28 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 29 H 0.04 1.18 6.70 -2.39 -0.02 1.16 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 1.48 7.70 -2.38 -0.02 1.47 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.84 6.64 -2.39 -0.02 1.82 16 35 H 0.06 2.58 5.76 -2.38 -0.01 2.57 16 36 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 37 H 0.05 1.79 7.74 -2.39 -0.02 1.77 16 38 H 0.08 3.12 5.30 -2.39 -0.01 3.10 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.41 9.84 6.86 -92.70 -0.64 9.21 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.50 5.88 -2.38 -0.01 1.48 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 49 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.01 383.98 3.94 -71.07 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.31 Total: 34.89 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.29 Total: 19.68 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.29 Total: -99.91 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: -0.38 Total: -68.60 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -75.01 3.94 -71.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773500617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.118 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds