Wall clock time and date at job start Tue Mar 31 2020 14:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47326 * 2 1 4 4 C 1.53003 * 109.47264 * 239.99272 * 2 1 3 5 5 O 1.45208 * 109.46899 * 119.99741 * 2 1 3 6 6 C 1.34632 * 117.00220 * 60.00392 * 5 2 1 7 7 O 1.21511 * 119.99838 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00034 * 180.02562 * 6 5 2 9 9 C 1.47427 * 125.64782 * 359.96975 * 8 6 5 10 10 C 1.54911 * 104.83293 * 155.92010 * 9 8 6 11 11 C 1.55157 * 101.58339 * 37.00803 * 10 9 8 12 12 H 1.09005 * 110.71899 * 83.03538 * 11 10 9 13 13 C 1.52997 * 110.72331 * 206.13567 * 11 10 9 14 14 C 1.50701 * 109.47212 * 184.99806 * 13 11 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 11 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 11 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.46983 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00428 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00227 * 23 21 19 25 25 H 1.48499 * 109.46907 * 209.99714 * 23 21 19 26 26 H 1.48495 * 109.46933 * 330.00015 * 23 21 19 27 27 C 1.47029 * 125.65226 * 180.02562 * 8 6 5 28 28 H 1.08994 * 109.47129 * 300.00143 * 1 2 3 29 29 H 1.08993 * 109.46738 * 60.00597 * 1 2 3 30 30 H 1.09003 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47786 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46956 * 299.99566 * 3 2 1 33 33 H 1.09002 * 109.47592 * 59.99386 * 3 2 1 34 34 H 1.08992 * 109.47374 * 300.00372 * 4 2 1 35 35 H 1.08998 * 109.46766 * 60.00085 * 4 2 1 36 36 H 1.08997 * 109.47156 * 180.02562 * 4 2 1 37 37 H 1.08994 * 110.36930 * 37.08362 * 9 8 6 38 38 H 1.09001 * 110.45957 * 274.80314 * 9 8 6 39 39 H 1.08994 * 111.00677 * 278.93494 * 10 9 8 40 40 H 1.09002 * 111.04028 * 155.09465 * 10 9 8 41 41 H 1.09002 * 109.47153 * 64.99808 * 13 11 10 42 42 H 1.09001 * 109.46832 * 304.99999 * 13 11 10 43 43 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 44 44 H 1.09001 * 109.47487 * 300.00114 * 17 16 14 45 45 H 1.09002 * 109.47182 * 60.00342 * 17 16 14 46 46 H 1.09001 * 109.47289 * 299.99909 * 18 17 16 47 47 H 1.09002 * 109.47153 * 59.99993 * 18 17 16 48 48 H 0.96993 * 120.00405 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.87887 * 61.59161 * 27 8 6 50 50 H 1.09000 * 109.88031 * 300.42930 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6523 -1.9723 1.3385 7 8 0.9510 -2.5094 0.5042 8 7 2.0672 -2.6653 2.4173 9 6 2.9168 -2.1397 3.5015 10 6 2.5994 -3.0364 4.7242 11 6 2.4152 -4.4235 4.0539 12 1 3.3796 -4.9061 3.8950 13 6 1.4985 -5.3139 4.8951 14 6 1.4371 -6.6904 4.2849 15 8 2.0651 -6.9353 3.2766 16 7 0.6851 -7.6497 4.8601 17 6 0.6259 -8.9879 4.2672 18 6 -0.2909 -9.8783 5.1083 19 6 -0.3514 -11.2552 4.4988 20 1 0.2078 -11.4733 3.6009 21 6 -1.1215 -12.2362 5.0867 22 7 -1.8028 -11.9705 6.1798 23 14 -1.1970 -13.9428 4.3307 24 1 -0.1217 -14.7882 4.9088 25 1 -2.5183 -14.5549 4.6216 26 1 -1.0110 -13.8416 2.8609 27 6 1.7485 -4.0710 2.7075 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2077 -2.1392 36 1 3.1300 -0.7218 -1.2489 37 1 2.6605 -1.1021 3.7153 38 1 3.9703 -2.2221 3.2340 39 1 1.6813 -2.7154 5.2163 40 1 3.4327 -3.0495 5.4267 41 1 0.4976 -4.8831 4.9213 42 1 1.8908 -5.3834 5.9097 43 1 0.1832 -7.4539 5.6667 44 1 0.2335 -8.9188 3.2526 45 1 1.6269 -9.4184 4.2411 46 1 0.1010 -9.9476 6.1231 47 1 -1.2919 -9.4477 5.1341 48 1 -2.3448 -12.6605 6.5932 49 1 2.1442 -4.7111 1.9190 50 1 0.6686 -4.1980 2.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777818429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:54 Heat of formation + Delta-G solvation = -136.149260 kcal Electronic energy + Delta-G solvation = -27831.538156 eV Core-core repulsion = 23858.209641 eV Total energy + Delta-G solvation = -3973.328515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00900 -39.72871 -38.49871 -36.69739 -34.90436 -34.36837 -32.99418 -32.77647 -30.27254 -29.52436 -27.71472 -27.64414 -27.31424 -24.81264 -23.77511 -21.92840 -21.18980 -20.64013 -19.79700 -19.59044 -18.09631 -17.08691 -16.73324 -16.63889 -16.27556 -15.86409 -15.29912 -15.12894 -14.92684 -14.55921 -14.46870 -14.01891 -13.88836 -13.51679 -13.31575 -13.05108 -12.92997 -12.79339 -12.67444 -12.38042 -12.31132 -12.18159 -12.14776 -12.04581 -11.65927 -11.52003 -11.48691 -11.21309 -11.14481 -11.02136 -10.94319 -10.64432 -10.59912 -10.33447 -10.19149 -9.81170 -9.46469 -9.18871 -8.89717 -8.55089 -8.36092 -6.10126 -4.12898 1.88967 2.69977 2.98573 3.29183 3.35305 3.39445 3.59073 3.69623 4.22895 4.34223 4.41547 4.42573 4.46235 4.58746 4.60979 4.93789 4.99313 5.12074 5.15502 5.20210 5.23704 5.26978 5.31413 5.38545 5.39607 5.47202 5.47247 5.50256 5.57493 5.62293 5.65250 5.67030 5.90572 5.95878 6.02784 6.07533 6.14314 6.26990 6.33834 6.34492 6.73443 6.90985 7.30560 7.50579 7.60596 7.88018 8.00093 8.18572 8.26987 8.63806 8.93119 9.52041 11.01424 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.001911 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.961706 B =14648.566214 C =15393.644610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.665 3.335 7 O -0.564 6.564 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.131 4.131 11 C -0.081 4.081 12 H 0.098 0.902 13 C -0.134 4.134 14 C 0.501 3.499 15 O -0.549 6.549 16 N -0.723 5.723 17 C 0.121 3.879 18 C 0.012 3.988 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.135 3.865 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.398 0.602 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.082 0.918 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 28.786 -4.497 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.420 3.580 7 O -0.453 6.453 8 N -0.346 5.346 9 C -0.019 4.019 10 C -0.169 4.169 11 C -0.101 4.101 12 H 0.117 0.883 13 C -0.174 4.174 14 C 0.287 3.713 15 O -0.428 6.428 16 N -0.373 5.373 17 C -0.001 4.001 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C 0.014 3.986 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.231 0.769 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.842 28.447 -5.497 30.293 hybrid contribution -0.440 -0.915 0.070 1.018 sum 8.402 27.532 -5.427 29.293 Atomic orbital electron populations 1.22516 0.93972 1.05191 1.02394 1.22070 0.94417 0.91454 0.82204 1.21848 1.02190 0.92536 1.03065 1.22517 1.01517 1.03649 0.96417 1.86287 1.71634 1.23565 1.46356 1.17478 0.78902 0.80348 0.81232 1.90925 1.41228 1.70424 1.42742 1.47207 1.53188 1.12973 1.21269 1.22320 0.94860 0.98543 0.86128 1.22912 1.03141 0.94138 0.96687 1.21987 1.00208 0.94612 0.93252 0.88325 1.21725 1.01765 0.93196 1.00713 1.20562 0.79564 0.86509 0.84698 1.90684 1.44611 1.82342 1.25119 1.46351 1.48104 1.12841 1.29970 1.21715 1.00891 0.79771 0.97747 1.19325 0.94180 0.93833 0.95197 1.21057 1.28530 0.95248 1.11199 0.92260 1.25000 0.95259 0.99119 0.94934 1.69952 1.29918 1.33961 1.19482 0.86510 0.77360 0.83971 0.79707 1.20562 1.21163 1.19725 1.22017 1.00429 0.78555 0.97622 0.92231 0.91149 0.89304 0.91517 0.90149 0.91531 0.89296 0.91149 0.92211 0.90223 0.91114 0.90133 0.89248 0.88696 0.88211 0.76899 0.92578 0.92595 0.95964 0.95947 0.92853 0.89987 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 2 C 0.14 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -0.87 8.85 37.15 0.33 -0.54 16 4 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 5 O -0.36 -4.12 9.42 -40.30 -0.38 -4.50 16 6 C 0.67 8.89 7.93 54.05 0.43 9.32 16 7 O -0.56 -8.99 12.21 -19.28 -0.24 -9.23 16 8 N -0.60 -7.06 3.33 -176.30 -0.59 -7.65 16 9 C 0.10 0.84 6.92 -2.53 -0.02 0.82 16 10 C -0.13 -0.87 6.53 -24.58 -0.16 -1.03 16 11 C -0.08 -0.79 2.51 -88.79 -0.22 -1.01 16 12 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 13 C -0.13 -1.32 5.11 -27.88 -0.14 -1.47 16 14 C 0.50 7.70 7.66 -10.98 -0.08 7.62 16 15 O -0.55 -10.50 15.15 5.56 0.08 -10.42 16 16 N -0.72 -11.94 5.56 -60.30 -0.33 -12.28 16 17 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 18 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 19 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 23 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.13 1.67 5.71 -3.06 -0.02 1.65 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.40 5.57 8.47 -40.82 -0.35 5.23 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 50 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 LS Contribution 401.91 15.07 6.06 6.06 Total: -1.00 -33.74 401.91 -8.51 -42.24 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.88 Total: 1.54 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.06 Total: 3.14 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.19 Total: -45.23 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.53 Total: -24.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.74 -8.51 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777818429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.905 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds