Wall clock time and date at job start Tue Mar 31 2020 14:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47326 * 2 1 4 4 C 1.53003 * 109.47264 * 239.99272 * 2 1 3 5 5 O 1.45208 * 109.46899 * 119.99741 * 2 1 3 6 6 C 1.34632 * 117.00220 * 60.00392 * 5 2 1 7 7 O 1.21511 * 119.99838 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00034 * 180.02562 * 6 5 2 9 9 C 1.47427 * 125.64782 * 359.96975 * 8 6 5 10 10 C 1.54911 * 104.83293 * 155.92010 * 9 8 6 11 11 C 1.55157 * 101.58339 * 37.00803 * 10 9 8 12 12 H 1.09005 * 110.71899 * 83.03538 * 11 10 9 13 13 C 1.52997 * 110.72331 * 206.13567 * 11 10 9 14 14 C 1.50701 * 109.47212 * 184.99806 * 13 11 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 11 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 11 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.46983 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00428 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00227 * 23 21 19 25 25 H 1.48499 * 109.46907 * 209.99714 * 23 21 19 26 26 H 1.48495 * 109.46933 * 330.00015 * 23 21 19 27 27 C 1.47029 * 125.65226 * 180.02562 * 8 6 5 28 28 H 1.08994 * 109.47129 * 300.00143 * 1 2 3 29 29 H 1.08993 * 109.46738 * 60.00597 * 1 2 3 30 30 H 1.09003 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47786 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46956 * 299.99566 * 3 2 1 33 33 H 1.09002 * 109.47592 * 59.99386 * 3 2 1 34 34 H 1.08992 * 109.47374 * 300.00372 * 4 2 1 35 35 H 1.08998 * 109.46766 * 60.00085 * 4 2 1 36 36 H 1.08997 * 109.47156 * 180.02562 * 4 2 1 37 37 H 1.08994 * 110.36930 * 37.08362 * 9 8 6 38 38 H 1.09001 * 110.45957 * 274.80314 * 9 8 6 39 39 H 1.08994 * 111.00677 * 278.93494 * 10 9 8 40 40 H 1.09002 * 111.04028 * 155.09465 * 10 9 8 41 41 H 1.09002 * 109.47153 * 64.99808 * 13 11 10 42 42 H 1.09001 * 109.46832 * 304.99999 * 13 11 10 43 43 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 44 44 H 1.09001 * 109.47487 * 300.00114 * 17 16 14 45 45 H 1.09002 * 109.47182 * 60.00342 * 17 16 14 46 46 H 1.09001 * 109.47289 * 299.99909 * 18 17 16 47 47 H 1.09002 * 109.47153 * 59.99993 * 18 17 16 48 48 H 0.96993 * 120.00405 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.87887 * 61.59161 * 27 8 6 50 50 H 1.09000 * 109.88031 * 300.42930 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6523 -1.9723 1.3385 7 8 0.9510 -2.5094 0.5042 8 7 2.0672 -2.6653 2.4173 9 6 2.9168 -2.1397 3.5015 10 6 2.5994 -3.0364 4.7242 11 6 2.4152 -4.4235 4.0539 12 1 3.3796 -4.9061 3.8950 13 6 1.4985 -5.3139 4.8951 14 6 1.4371 -6.6904 4.2849 15 8 2.0651 -6.9353 3.2766 16 7 0.6851 -7.6497 4.8601 17 6 0.6259 -8.9879 4.2672 18 6 -0.2909 -9.8783 5.1083 19 6 -0.3514 -11.2552 4.4988 20 1 0.2078 -11.4733 3.6009 21 6 -1.1215 -12.2362 5.0867 22 7 -1.8028 -11.9705 6.1798 23 14 -1.1970 -13.9428 4.3307 24 1 -0.1217 -14.7882 4.9088 25 1 -2.5183 -14.5549 4.6216 26 1 -1.0110 -13.8416 2.8609 27 6 1.7485 -4.0710 2.7075 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2077 -2.1392 36 1 3.1300 -0.7218 -1.2489 37 1 2.6605 -1.1021 3.7153 38 1 3.9703 -2.2221 3.2340 39 1 1.6813 -2.7154 5.2163 40 1 3.4327 -3.0495 5.4267 41 1 0.4976 -4.8831 4.9213 42 1 1.8908 -5.3834 5.9097 43 1 0.1832 -7.4539 5.6667 44 1 0.2335 -8.9188 3.2526 45 1 1.6269 -9.4184 4.2411 46 1 0.1010 -9.9476 6.1231 47 1 -1.2919 -9.4477 5.1341 48 1 -2.3448 -12.6605 6.5932 49 1 2.1442 -4.7111 1.9190 50 1 0.6686 -4.1980 2.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777818429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:53 Heat of formation + Delta-G solvation = -158.586515 kcal Electronic energy + Delta-G solvation = -27832.511108 eV Core-core repulsion = 23858.209641 eV Total energy + Delta-G solvation = -3974.301467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92516 -40.86969 -39.49070 -37.65388 -36.56423 -35.20158 -34.80036 -33.82300 -31.71673 -30.63768 -28.45766 -28.39223 -28.28304 -26.55343 -24.77470 -22.93052 -22.67640 -21.80662 -20.87210 -20.45121 -18.98889 -18.56920 -18.03713 -17.69271 -17.50487 -16.88607 -16.60109 -16.42623 -16.14271 -16.07550 -15.40534 -15.03145 -14.87789 -14.67039 -14.38302 -14.26644 -14.09452 -13.84182 -13.47385 -13.34985 -13.22230 -13.09297 -12.97311 -12.90995 -12.87724 -12.81456 -12.55710 -12.47222 -12.27890 -12.23152 -12.21503 -11.95891 -11.65435 -11.63826 -11.46144 -11.41600 -11.14475 -10.73173 -10.60873 -9.96476 -9.82716 -8.25070 -6.35260 1.02168 1.40558 1.41021 1.52486 1.69513 1.74933 2.30180 2.47644 2.89091 3.09478 3.47537 3.58189 3.74195 3.77398 3.80318 3.93364 3.97287 4.26145 4.39454 4.43031 4.48710 4.49582 4.59209 4.59619 4.62155 4.65239 4.73506 4.74304 4.81561 4.83004 4.84502 4.87173 4.87426 5.01311 5.08196 5.12808 5.21510 5.26036 5.31919 5.33310 5.38245 5.44533 5.52179 5.58844 5.79162 6.16466 6.38891 6.70523 6.77984 7.21489 7.33956 7.37396 8.86543 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.001911 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.961706 B =14648.566214 C =15393.644610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.360 6.360 6 C 0.657 3.343 7 O -0.600 6.600 8 N -0.607 5.607 9 C 0.098 3.902 10 C -0.113 4.113 11 C -0.076 4.076 12 H 0.088 0.912 13 C -0.120 4.120 14 C 0.497 3.503 15 O -0.591 6.591 16 N -0.720 5.720 17 C 0.140 3.860 18 C 0.022 3.978 19 C -0.548 4.548 20 H 0.056 0.944 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.269 1.269 27 C 0.135 3.865 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.412 0.588 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.011 0.989 47 H 0.008 0.992 48 H 0.266 0.734 49 H 0.043 0.957 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 30.857 -3.292 32.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.275 6.275 6 C 0.412 3.588 7 O -0.492 6.492 8 N -0.348 5.348 9 C -0.024 4.024 10 C -0.150 4.150 11 C -0.095 4.095 12 H 0.107 0.893 13 C -0.160 4.160 14 C 0.285 3.715 15 O -0.472 6.472 16 N -0.372 5.372 17 C 0.016 3.984 18 C -0.015 4.015 19 C -0.587 4.587 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.193 1.193 27 C 0.013 3.987 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.026 0.974 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.603 30.563 -4.253 32.317 hybrid contribution -0.668 -1.517 -0.365 1.697 sum 8.936 29.046 -4.618 30.738 Atomic orbital electron populations 1.22465 0.94120 1.03333 1.03739 1.22458 0.94567 0.92933 0.81384 1.21863 1.02463 0.90076 1.04487 1.22475 1.01619 1.01937 0.97751 1.86300 1.71477 1.22392 1.47314 1.17760 0.78730 0.80959 0.81303 1.90910 1.42856 1.71284 1.44146 1.47357 1.53179 1.12618 1.21633 1.22615 0.94644 0.99605 0.85501 1.22925 1.05164 0.90766 0.96177 1.21940 0.99192 0.96488 0.91929 0.89349 1.21776 1.03400 0.88925 1.01866 1.21598 0.77894 0.88049 0.83925 1.90677 1.46126 1.83308 1.27082 1.46188 1.48958 1.11433 1.30585 1.21153 0.99098 0.81734 0.96402 1.19133 0.93989 0.93464 0.94914 1.21480 1.28781 0.96996 1.11434 0.92589 1.25854 0.94775 1.03142 0.95352 1.70047 1.30451 1.35353 1.20565 0.85468 0.77720 0.79097 0.78901 1.19631 1.20431 1.19349 1.21919 0.99687 0.78758 0.98298 0.91633 0.89023 0.92668 0.91079 0.87961 0.90855 0.92760 0.88940 0.91927 0.88753 0.90385 0.88583 0.86171 0.86513 0.84347 0.75205 0.94283 0.93699 0.97024 0.97376 0.92522 0.93831 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 2 C 0.12 2.20 1.13 -10.80 -0.01 2.18 16 3 C -0.13 -1.34 8.85 71.98 0.64 -0.70 16 4 C -0.18 -3.42 8.37 71.98 0.60 -2.81 16 5 O -0.36 -8.05 9.42 -55.41 -0.52 -8.57 16 6 C 0.66 18.14 7.93 129.79 1.03 19.17 16 7 O -0.60 -20.57 12.21 19.81 0.24 -20.33 16 8 N -0.61 -14.19 3.33 -942.10 -3.13 -17.32 16 9 C 0.10 1.36 6.92 86.86 0.60 1.96 16 10 C -0.11 -1.09 6.53 31.99 0.21 -0.88 16 11 C -0.08 -1.35 2.51 -9.61 -0.02 -1.38 16 12 H 0.09 1.80 7.88 -2.38 -0.02 1.78 16 13 C -0.12 -2.07 5.11 29.85 0.15 -1.91 16 14 C 0.50 15.06 7.66 87.66 0.67 15.73 16 15 O -0.59 -23.26 15.15 -3.03 -0.05 -23.31 16 16 N -0.72 -23.64 5.56 -463.06 -2.57 -26.22 16 17 C 0.14 6.04 5.61 86.38 0.48 6.53 16 18 C 0.02 1.13 5.09 29.85 0.15 1.28 16 19 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 20 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.92 -54.17 13.29 21.45 0.28 -53.88 16 23 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.14 3.46 5.71 86.73 0.49 3.95 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.41 5.88 -2.39 -0.01 1.39 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 1.43 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.71 8.05 -2.39 -0.02 0.69 16 40 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.12 1.61 7.93 -2.39 -0.02 1.60 16 42 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.41 11.12 8.47 -92.71 -0.79 10.34 16 44 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.04 1.43 7.89 -2.39 -0.02 1.41 16 50 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 Total: -1.00 -77.55 401.91 2.70 -74.84 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.13 Total: 18.11 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 6.30 Total: 10.64 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -5.42 Total: -97.41 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.33 Total: -52.21 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.55 2.70 -74.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777818429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.742 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds