Wall clock time and date at job start Tue Mar 31 2020 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 H 1.09009 * 109.46866 * 305.00034 * 15 14 12 17 17 N 1.46500 * 109.47466 * 64.99479 * 15 14 12 18 18 C 1.34771 * 120.00556 * 205.00158 * 17 15 14 19 19 O 1.21515 * 119.99997 * 0.02562 * 18 17 15 20 20 O 1.34636 * 120.00459 * 180.02562 * 18 17 15 21 21 C 1.45200 * 117.00438 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.46900 * 59.99550 * 21 20 18 23 23 C 1.52995 * 109.47215 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.46604 * 300.00137 * 21 20 18 25 25 C 1.52994 * 109.47347 * 185.00014 * 15 14 12 26 26 C 1.52996 * 117.49767 * 248.74635 * 25 15 14 27 27 C 1.53003 * 117.50255 * 180.08461 * 25 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 0.97002 * 119.99373 * 25.00408 * 17 15 14 37 37 H 1.09000 * 109.46948 * 60.00999 * 22 21 20 38 38 H 1.09001 * 109.46732 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47564 * 300.00302 * 22 21 20 40 40 H 1.09000 * 109.47027 * 59.99924 * 23 21 20 41 41 H 1.09002 * 109.46926 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46989 * 299.99902 * 23 21 20 43 43 H 1.08992 * 109.47422 * 59.99747 * 24 21 20 44 44 H 1.09001 * 109.46554 * 180.02562 * 24 21 20 45 45 H 1.09006 * 109.46936 * 299.99505 * 24 21 20 46 46 H 1.09006 * 115.55146 * 34.41151 * 25 15 14 47 47 H 1.09002 * 117.50370 * 359.97438 * 26 25 15 48 48 H 1.09004 * 117.49997 * 145.02184 * 26 25 15 49 49 H 1.08991 * 117.50102 * 214.98105 * 27 25 15 50 50 H 1.09004 * 117.49439 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 1 3.0640 -3.5245 -0.8517 17 7 3.1409 -3.6325 1.2414 18 6 4.3655 -4.1932 1.2868 19 8 4.8388 -4.7007 0.2892 20 8 5.0647 -4.1913 2.4374 21 6 6.3769 -4.8124 2.4125 22 6 7.2621 -4.0938 1.3923 23 6 7.0145 -4.7132 3.7998 24 6 6.2369 -6.2844 2.0191 25 6 1.6191 -4.9560 -0.1420 26 6 1.6096 -5.8895 1.0702 27 6 2.4417 -6.2459 -0.1643 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.8224 4.0832 -3.0901 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 2.7632 -3.2271 2.0377 37 1 7.3618 -3.0452 1.6726 38 1 8.2472 -4.5599 1.3740 39 1 6.8080 -4.1641 0.4039 40 1 6.3840 -5.2249 4.5269 41 1 7.9997 -5.1791 3.7809 42 1 7.1142 -3.6645 4.0796 43 1 5.7828 -6.3547 1.0307 44 1 7.2219 -6.7508 2.0009 45 1 5.6062 -6.7963 2.7460 46 1 0.7203 -4.9217 -0.7578 47 1 2.1456 -5.5629 1.9613 48 1 0.7048 -6.4697 1.2516 49 1 2.0840 -7.0601 -0.7944 50 1 3.5250 -6.1534 -0.0856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785357690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:54 Heat of formation + Delta-G solvation = -86.399064 kcal Electronic energy + Delta-G solvation = -29713.770431 eV Core-core repulsion = 25742.599247 eV Total energy + Delta-G solvation = -3971.171184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87651 -39.41429 -38.18265 -36.31745 -34.99971 -34.35311 -33.61306 -32.57044 -30.91249 -28.44775 -27.49325 -27.37133 -26.07153 -24.83168 -22.70707 -22.37958 -21.98173 -20.04626 -19.94308 -18.51332 -18.00627 -16.97654 -16.84444 -16.57897 -16.06193 -15.69582 -15.33709 -15.19464 -14.64868 -14.50484 -14.28118 -14.01383 -13.60591 -13.40126 -12.87055 -12.70268 -12.57616 -12.39044 -12.24925 -12.20027 -12.08152 -11.97934 -11.90197 -11.79890 -11.67456 -11.52798 -11.45130 -11.29547 -11.27294 -10.90791 -10.53795 -10.38605 -10.29721 -10.15559 -10.02273 -9.81250 -9.54932 -9.07041 -8.88963 -8.59246 -7.71501 -6.09051 -4.07839 2.27974 3.04722 3.28515 3.31781 3.34439 3.36432 3.70793 3.85585 4.22742 4.39106 4.61943 4.67448 4.71252 4.78449 4.86527 4.97304 5.02867 5.21356 5.24964 5.36036 5.37080 5.39836 5.46621 5.49486 5.58739 5.60102 5.65453 5.70712 5.72859 5.81371 5.84678 5.89739 5.93063 6.01130 6.10997 6.13910 6.19890 6.30830 6.38624 6.54947 6.67530 6.68613 6.93052 7.31481 7.58660 7.60612 8.22378 8.46377 8.57707 8.91945 8.97547 9.51217 11.04382 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.003725 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.721667 B = 7515.268403 C = 9000.435190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.501 3.499 13 O -0.529 6.529 14 C -0.147 4.147 15 C 0.210 3.790 16 H 0.105 0.895 17 N -0.690 5.690 18 C 0.660 3.340 19 O -0.565 6.565 20 O -0.367 6.367 21 C 0.138 3.862 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.182 4.182 25 C -0.170 4.170 26 C -0.178 4.178 27 C -0.183 4.183 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -19.074 12.761 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.288 3.712 13 O -0.406 6.406 14 C -0.187 4.187 15 C 0.106 3.894 16 H 0.123 0.877 17 N -0.347 5.347 18 C 0.413 3.587 19 O -0.455 6.455 20 O -0.282 6.282 21 C 0.101 3.899 22 C -0.242 4.242 23 C -0.198 4.198 24 C -0.239 4.239 25 C -0.189 4.189 26 C -0.215 4.215 27 C -0.220 4.220 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.818 -19.163 12.189 22.784 hybrid contribution 0.008 0.955 0.839 1.272 sum -1.809 -18.207 13.028 22.462 Atomic orbital electron populations 1.21669 0.81007 1.03049 1.00394 1.47847 1.06213 1.07146 1.71948 1.19640 0.92393 0.80063 0.98322 1.21327 1.36988 1.07141 0.91278 0.90788 1.24862 0.95232 0.97373 0.95550 1.69900 1.41459 1.23556 1.18648 0.86848 0.80126 0.79757 0.82922 1.19943 1.21061 1.19111 1.20265 0.88207 0.84999 0.77769 1.90725 1.13626 1.87015 1.49206 1.22025 0.98984 0.92754 1.04974 1.20144 0.91574 0.91023 0.86631 0.87707 1.44542 1.15167 1.60870 1.14142 1.17906 0.81279 0.77809 0.81669 1.90814 1.69558 1.50002 1.35100 1.86282 1.31394 1.75190 1.35365 1.21998 0.78672 0.92408 0.96824 1.22517 0.99508 1.00597 1.01533 1.21853 1.00314 1.03340 0.94261 1.22514 1.02851 0.94270 1.04249 1.22803 1.01835 0.91398 1.02882 1.22917 1.02328 1.03256 0.92988 1.23361 1.00849 0.97433 1.00340 0.93695 0.90596 0.92095 0.95358 0.94648 0.92563 0.88787 0.87361 0.76428 0.92003 0.91495 0.89069 0.91698 0.90330 0.91440 0.89249 0.91394 0.92432 0.86917 0.88976 0.89313 0.89468 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.25 59.85 0.61 1.79 16 2 N -0.60 -11.79 2.86 -182.95 -0.52 -12.32 16 3 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 4 C -0.53 -15.19 9.94 -34.44 -0.34 -15.54 16 5 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 8 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 C 0.50 9.55 7.53 -10.98 -0.08 9.46 16 13 O -0.53 -12.54 14.93 5.55 0.08 -12.45 16 14 C -0.15 -1.87 3.78 -27.88 -0.11 -1.98 16 15 C 0.21 2.85 1.99 -67.94 -0.14 2.71 16 16 H 0.11 1.81 7.39 -51.92 -0.38 1.42 16 17 N -0.69 -9.54 2.76 -58.73 -0.16 -9.70 16 18 C 0.66 10.19 6.89 54.05 0.37 10.57 16 19 O -0.56 -9.60 8.91 -19.28 -0.17 -9.78 16 20 O -0.37 -5.28 9.94 -40.31 -0.40 -5.68 16 21 C 0.14 1.66 1.13 -90.62 -0.10 1.56 16 22 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 23 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 24 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 25 C -0.17 -1.85 5.70 -90.62 -0.52 -2.36 16 26 C -0.18 -1.79 9.74 -26.69 -0.26 -2.05 16 27 C -0.18 -2.11 9.83 -26.69 -0.26 -2.38 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.15 8.07 -51.93 -0.42 0.74 16 30 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 31 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 32 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.11 1.19 7.40 -51.93 -0.38 0.81 16 36 H 0.40 4.94 8.71 -40.82 -0.36 4.59 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 47 H 0.09 0.99 6.67 -51.93 -0.35 0.64 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.12 1.66 5.01 -51.93 -0.26 1.40 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -35.30 393.09 -7.62 -42.91 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.48 Total: 6.82 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 0.01 Total: 4.29 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.09 Total: -49.07 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.49 Total: -27.90 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.30 -7.62 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785357690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.486 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds