Wall clock time and date at job start Tue Mar 31 2020 15:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 H 1.09009 * 109.46866 * 305.00034 * 15 14 12 17 17 N 1.46500 * 109.47466 * 64.99479 * 15 14 12 18 18 C 1.34771 * 120.00556 * 205.00158 * 17 15 14 19 19 O 1.21515 * 119.99997 * 0.02562 * 18 17 15 20 20 O 1.34636 * 120.00459 * 180.02562 * 18 17 15 21 21 C 1.45200 * 117.00438 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.46900 * 59.99550 * 21 20 18 23 23 C 1.52995 * 109.47215 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.46604 * 300.00137 * 21 20 18 25 25 C 1.52994 * 109.47347 * 185.00014 * 15 14 12 26 26 C 1.52996 * 117.49767 * 248.74635 * 25 15 14 27 27 C 1.53003 * 117.50255 * 180.08461 * 25 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 0.97002 * 119.99373 * 25.00408 * 17 15 14 37 37 H 1.09000 * 109.46948 * 60.00999 * 22 21 20 38 38 H 1.09001 * 109.46732 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47564 * 300.00302 * 22 21 20 40 40 H 1.09000 * 109.47027 * 59.99924 * 23 21 20 41 41 H 1.09002 * 109.46926 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46989 * 299.99902 * 23 21 20 43 43 H 1.08992 * 109.47422 * 59.99747 * 24 21 20 44 44 H 1.09001 * 109.46554 * 180.02562 * 24 21 20 45 45 H 1.09006 * 109.46936 * 299.99505 * 24 21 20 46 46 H 1.09006 * 115.55146 * 34.41151 * 25 15 14 47 47 H 1.09002 * 117.50370 * 359.97438 * 26 25 15 48 48 H 1.09004 * 117.49997 * 145.02184 * 26 25 15 49 49 H 1.08991 * 117.50102 * 214.98105 * 27 25 15 50 50 H 1.09004 * 117.49439 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 1 3.0640 -3.5245 -0.8517 17 7 3.1409 -3.6325 1.2414 18 6 4.3655 -4.1932 1.2868 19 8 4.8388 -4.7007 0.2892 20 8 5.0647 -4.1913 2.4374 21 6 6.3769 -4.8124 2.4125 22 6 7.2621 -4.0938 1.3923 23 6 7.0145 -4.7132 3.7998 24 6 6.2369 -6.2844 2.0191 25 6 1.6191 -4.9560 -0.1420 26 6 1.6096 -5.8895 1.0702 27 6 2.4417 -6.2459 -0.1643 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.8224 4.0832 -3.0901 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 2.7632 -3.2271 2.0377 37 1 7.3618 -3.0452 1.6726 38 1 8.2472 -4.5599 1.3740 39 1 6.8080 -4.1641 0.4039 40 1 6.3840 -5.2249 4.5269 41 1 7.9997 -5.1791 3.7809 42 1 7.1142 -3.6645 4.0796 43 1 5.7828 -6.3547 1.0307 44 1 7.2219 -6.7508 2.0009 45 1 5.6062 -6.7963 2.7460 46 1 0.7203 -4.9217 -0.7578 47 1 2.1456 -5.5629 1.9613 48 1 0.7048 -6.4697 1.2516 49 1 2.0840 -7.0601 -0.7944 50 1 3.5250 -6.1534 -0.0856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785357690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:53 Heat of formation + Delta-G solvation = -110.435722 kcal Electronic energy + Delta-G solvation = -29714.812739 eV Core-core repulsion = 25742.599247 eV Total energy + Delta-G solvation = -3972.213492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99024 -40.77472 -39.32150 -37.36639 -36.60731 -35.46036 -34.76388 -34.57222 -32.20270 -30.24023 -28.37293 -28.29436 -27.36863 -26.23534 -23.92769 -23.68048 -23.14741 -21.10679 -20.94384 -19.94977 -19.18466 -19.12131 -18.03770 -17.66963 -17.32404 -17.07786 -16.74478 -16.18579 -16.09514 -15.88052 -15.48119 -15.23303 -14.80810 -14.57970 -14.42813 -14.14661 -13.78626 -13.66657 -13.48898 -13.31243 -13.17490 -13.12774 -12.97772 -12.91272 -12.79136 -12.72498 -12.63113 -12.49957 -12.42371 -12.27929 -12.20227 -12.02047 -11.75721 -11.33193 -11.26600 -11.01378 -10.86677 -10.84372 -10.57115 -10.03323 -9.34046 -8.35619 -6.40267 1.23774 1.29915 1.34501 1.42529 1.85946 1.89135 2.28947 2.35314 2.93122 2.99174 3.22599 3.59755 3.65469 3.76184 3.80517 3.95156 4.05599 4.13183 4.28491 4.37184 4.42055 4.48230 4.55820 4.60939 4.66863 4.70453 4.73154 4.75063 4.82681 4.85276 4.87268 4.87646 4.96725 4.97671 5.04600 5.06486 5.12064 5.26312 5.28728 5.31480 5.40098 5.45836 5.48537 5.64470 5.68012 6.23258 6.48031 6.61522 6.75672 7.21178 7.45391 7.48540 8.81498 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.003725 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.721667 B = 7515.268403 C = 9000.435190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.225 3.775 4 C -0.535 4.535 5 H 0.028 0.972 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.236 1.236 12 C 0.491 3.509 13 O -0.589 6.589 14 C -0.129 4.129 15 C 0.211 3.789 16 H 0.056 0.944 17 N -0.685 5.685 18 C 0.651 3.349 19 O -0.587 6.587 20 O -0.374 6.374 21 C 0.126 3.874 22 C -0.182 4.182 23 C -0.135 4.135 24 C -0.174 4.174 25 C -0.164 4.164 26 C -0.157 4.157 27 C -0.201 4.201 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.014 0.986 33 H 0.268 0.732 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.141 0.859 47 H 0.084 0.916 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -20.233 15.739 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.102 3.898 4 C -0.574 4.574 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.159 1.159 12 C 0.280 3.720 13 O -0.469 6.469 14 C -0.168 4.168 15 C 0.107 3.893 16 H 0.075 0.925 17 N -0.343 5.343 18 C 0.405 3.595 19 O -0.478 6.478 20 O -0.289 6.289 21 C 0.090 3.910 22 C -0.239 4.239 23 C -0.191 4.191 24 C -0.231 4.231 25 C -0.183 4.183 26 C -0.194 4.194 27 C -0.238 4.238 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.245 0.755 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.159 0.841 47 H 0.102 0.898 48 H 0.133 0.867 49 H 0.119 0.881 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.952 -20.337 15.189 25.689 hybrid contribution 0.688 1.262 -0.195 1.451 sum -3.264 -19.075 14.994 24.481 Atomic orbital electron populations 1.22017 0.77399 1.04159 1.03125 1.47972 1.08507 1.05791 1.71743 1.19267 0.92619 0.82920 0.94986 1.21604 1.36576 1.06597 0.92600 0.95359 1.25870 0.95379 0.99065 0.98553 1.70057 1.42829 1.24498 1.21295 0.85719 0.79397 0.77816 0.80015 1.20653 1.19921 1.15867 1.21389 0.87936 0.86686 0.76013 1.90703 1.16547 1.87995 1.51665 1.22036 0.98416 0.88060 1.08304 1.20068 0.91060 0.93183 0.84975 0.92544 1.44561 1.14775 1.60417 1.14527 1.18148 0.81758 0.77893 0.81722 1.90814 1.70125 1.50950 1.35941 1.86286 1.32321 1.75500 1.34828 1.22361 0.77644 0.92758 0.98247 1.22480 1.01038 1.00271 1.00100 1.21875 1.01501 1.03443 0.92325 1.22431 1.04108 0.93645 1.02927 1.22757 1.01991 0.89362 1.04146 1.22947 1.02436 1.02127 0.91847 1.23305 0.99542 0.98552 1.02409 0.89966 0.92054 0.88594 0.93292 0.96799 0.92331 0.84225 0.84675 0.75515 0.93498 0.88820 0.92508 0.90513 0.87834 0.92071 0.91893 0.89187 0.91356 0.84103 0.89768 0.86709 0.88111 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 10.25 127.77 1.31 3.19 16 2 N -0.61 -23.30 2.86 -851.12 -2.43 -25.73 16 3 C 0.22 10.87 4.23 85.63 0.36 11.23 16 4 C -0.54 -31.75 9.94 25.60 0.25 -31.50 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 6 C 0.01 0.55 5.47 84.66 0.46 1.01 16 7 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 8 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 9 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 12 C 0.49 18.49 7.53 87.66 0.66 19.15 16 13 O -0.59 -29.03 14.93 -3.04 -0.05 -29.08 16 14 C -0.13 -2.95 3.78 29.85 0.11 -2.83 16 15 C 0.21 5.62 1.99 44.99 0.09 5.71 16 16 H 0.06 2.07 7.39 -2.38 -0.02 2.05 16 17 N -0.68 -18.99 2.76 -570.14 -1.57 -20.56 16 18 C 0.65 20.98 6.89 129.79 0.89 21.87 16 19 O -0.59 -21.47 8.91 19.79 0.18 -21.29 16 20 O -0.37 -10.98 9.94 -55.46 -0.55 -11.53 16 21 C 0.13 3.04 1.13 -10.79 -0.01 3.03 16 22 C -0.18 -4.98 8.37 71.98 0.60 -4.38 16 23 C -0.13 -2.26 8.85 71.98 0.64 -1.62 16 24 C -0.17 -3.70 8.37 71.98 0.60 -3.09 16 25 C -0.16 -3.20 5.70 -10.80 -0.06 -3.26 16 26 C -0.16 -2.73 9.74 30.62 0.30 -2.43 16 27 C -0.20 -4.49 9.83 30.62 0.30 -4.19 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.74 8.07 -2.39 -0.02 1.72 16 30 H 0.10 1.73 6.43 -2.39 -0.02 1.72 16 31 H 0.05 2.16 7.13 -2.39 -0.02 2.15 16 32 H 0.01 0.73 6.85 -2.38 -0.02 0.72 16 33 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.14 2.01 8.11 -2.38 -0.02 1.99 16 35 H 0.14 2.45 7.40 -2.39 -0.02 2.43 16 36 H 0.41 9.73 8.71 -92.71 -0.81 8.92 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.96 5.88 -2.39 -0.01 1.94 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.70 5.88 -2.39 -0.01 1.69 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.14 2.00 8.11 -2.38 -0.02 1.98 16 47 H 0.08 1.63 6.67 -2.39 -0.02 1.62 16 48 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.09 2.60 5.01 -2.38 -0.01 2.59 16 Total: -1.00 -85.27 393.09 4.34 -80.92 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.07 Total: 28.82 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.51 Total: 11.89 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -3.70 Total: -106.76 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -0.42 Total: -61.90 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -85.27 4.34 -80.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785357690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.511 kcal (2) G-P(sol) polarization free energy of solvation -85.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds