Wall clock time and date at job start Tue Mar 31 2020 14:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47479 * 2 1 4 4 C 1.52997 * 109.46595 * 240.00087 * 2 1 3 5 5 O 1.45198 * 109.46984 * 120.00421 * 2 1 3 6 6 C 1.34638 * 116.99933 * 59.99694 * 5 2 1 7 7 O 1.21504 * 120.00206 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99743 * 179.97438 * 6 5 2 9 9 C 1.47428 * 125.64860 * 359.97438 * 8 6 5 10 10 C 1.54915 * 104.83102 * 155.91040 * 9 8 6 11 11 C 1.55153 * 101.58175 * 37.00975 * 10 9 8 12 12 H 1.09002 * 110.72030 * 82.86195 * 11 10 9 13 13 C 1.53003 * 110.71957 * 205.95687 * 11 10 9 14 14 C 1.53003 * 109.46894 * 182.56024 * 13 11 10 15 15 C 1.50704 * 109.46721 * 179.97438 * 14 13 11 16 16 O 1.21272 * 120.00166 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99571 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99723 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47149 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99893 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47115 * 89.99835 * 23 21 19 25 25 H 1.48499 * 109.47236 * 210.00016 * 23 21 19 26 26 H 1.48496 * 109.47103 * 330.00163 * 23 21 19 27 27 C 1.47486 * 125.59413 * 179.97438 * 8 6 5 28 28 H 1.09006 * 109.46611 * 299.99756 * 1 2 3 29 29 H 1.09000 * 109.47522 * 59.99359 * 1 2 3 30 30 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47266 * 300.00797 * 3 2 1 33 33 H 1.08998 * 109.46856 * 60.00154 * 3 2 1 34 34 H 1.09002 * 109.47547 * 299.99953 * 4 2 1 35 35 H 1.09002 * 109.47465 * 60.00039 * 4 2 1 36 36 H 1.09001 * 109.47388 * 180.02562 * 4 2 1 37 37 H 1.09000 * 110.36462 * 37.07589 * 9 8 6 38 38 H 1.08998 * 110.36847 * 274.74797 * 9 8 6 39 39 H 1.09003 * 111.00447 * 278.93450 * 10 9 8 40 40 H 1.09001 * 111.00309 * 155.08732 * 10 9 8 41 41 H 1.09001 * 109.47158 * 302.56200 * 13 11 10 42 42 H 1.09002 * 109.47171 * 62.55730 * 13 11 10 43 43 H 1.09004 * 109.47098 * 299.99587 * 14 13 11 44 44 H 1.08993 * 109.46975 * 60.00219 * 14 13 11 45 45 H 0.96993 * 120.00521 * 0.02562 * 17 15 14 46 46 H 1.08993 * 109.47589 * 300.00653 * 18 17 15 47 47 H 1.09003 * 109.46897 * 60.00975 * 18 17 15 48 48 H 0.96999 * 119.99562 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.02886 * 61.64190 * 27 8 6 50 50 H 1.09005 * 109.96368 * 300.33047 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6521 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0679 -2.6658 2.4165 9 6 2.9186 -2.1408 3.5001 10 6 2.6019 -3.0377 4.7228 11 6 2.4169 -4.4246 4.0522 12 1 3.3812 -4.9060 3.8897 13 6 1.5041 -5.3165 4.8963 14 6 1.3927 -6.6955 4.2429 15 6 0.4942 -7.5742 5.0746 16 8 -0.0079 -7.1401 6.0895 17 7 0.2479 -8.8422 4.6898 18 6 -0.6251 -9.6966 5.4985 19 6 -0.7350 -11.0548 4.8550 20 1 -0.2070 -11.2611 3.9357 21 6 -1.5096 -12.0341 5.4398 22 7 -2.1530 -11.7827 6.5589 23 14 -1.6452 -13.7180 4.6424 24 1 -0.5729 -14.6016 5.1664 25 1 -2.9710 -14.3089 4.9560 26 1 -1.4995 -13.5820 3.1709 27 6 1.7466 -4.0757 2.7067 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2492 37 1 2.6626 -1.1032 3.7143 38 1 3.9714 -2.2248 3.2305 39 1 1.6843 -2.7165 5.2158 40 1 3.4362 -3.0510 5.4242 41 1 1.9230 -5.4214 5.8971 42 1 0.5144 -4.8646 4.9622 43 1 0.9738 -6.5906 3.2421 44 1 2.3824 -7.1474 4.1770 45 1 0.6492 -9.1893 3.8778 46 1 -0.2053 -9.8018 6.4989 47 1 -1.6149 -9.2448 5.5655 48 1 -2.6982 -12.4716 6.9701 49 1 2.1402 -4.7181 1.9190 50 1 0.6669 -4.2025 2.7864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:41 Heat of formation + Delta-G solvation = -138.711997 kcal Electronic energy + Delta-G solvation = -27689.588075 eV Core-core repulsion = 23716.148432 eV Total energy + Delta-G solvation = -3973.439643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04396 -39.36953 -38.58297 -36.82055 -34.62296 -34.20230 -33.63276 -32.31097 -30.83031 -28.88958 -27.74752 -27.68300 -27.20497 -25.20871 -23.28034 -22.01580 -21.98195 -20.24875 -19.72372 -19.46810 -18.16356 -17.11692 -16.93950 -16.67496 -15.95506 -15.57968 -15.29649 -15.12850 -15.04432 -14.60202 -14.25251 -14.07917 -13.84277 -13.52395 -13.33134 -12.96172 -12.85265 -12.81982 -12.66540 -12.43694 -12.22322 -12.19608 -12.15244 -11.94359 -11.71645 -11.67068 -11.56147 -11.35496 -11.13600 -10.93021 -10.87733 -10.85919 -10.66395 -10.64340 -10.30804 -10.25002 -9.39037 -9.01515 -8.98772 -8.72874 -7.86521 -6.16207 -4.23086 1.82912 2.63422 3.24512 3.30716 3.33271 3.40578 3.59460 4.04675 4.24390 4.30493 4.37263 4.38744 4.42672 4.57183 4.65345 4.95366 5.00782 5.12211 5.13331 5.17913 5.19821 5.20437 5.26623 5.35050 5.36165 5.40513 5.44204 5.53475 5.53645 5.56886 5.63930 5.66909 5.69425 5.86964 5.90754 5.95251 5.98296 6.04971 6.17941 6.21826 6.33985 7.23534 7.31883 7.45831 7.52730 7.67538 7.98002 8.11672 8.64878 8.78916 9.12720 9.43757 10.94003 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001883 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.790949 B =14866.332285 C =15670.194937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.566 6.566 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.100 4.100 12 H 0.089 0.911 13 C -0.091 4.091 14 C -0.145 4.145 15 C 0.496 3.504 16 O -0.559 6.559 17 N -0.714 5.714 18 C 0.249 3.751 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.128 3.872 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.390 0.610 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.266 0.734 49 H 0.073 0.927 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.174 25.681 -11.883 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.455 6.455 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.167 4.167 11 C -0.119 4.119 12 H 0.108 0.892 13 C -0.129 4.129 14 C -0.185 4.185 15 C 0.281 3.719 16 O -0.439 6.439 17 N -0.362 5.362 18 C 0.128 3.872 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.007 3.993 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.223 0.777 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.406 25.826 -11.400 30.836 hybrid contribution 0.035 -1.169 -0.858 1.450 sum 12.441 24.657 -12.257 30.216 Atomic orbital electron populations 1.22521 0.93921 1.05196 1.02470 1.22075 0.94452 0.91473 0.82139 1.21850 1.02175 0.92530 1.03128 1.22515 1.01466 1.03599 0.96461 1.86295 1.71558 1.23530 1.46393 1.17497 0.78791 0.80387 0.81232 1.90916 1.41279 1.70479 1.42838 1.47300 1.53145 1.12866 1.21369 1.22351 0.94550 0.98745 0.86221 1.22880 1.03317 0.94035 0.96488 1.22351 0.99955 0.95953 0.93640 0.89220 1.21314 0.99927 0.92921 0.98773 1.21735 1.00601 0.95961 1.00202 1.20515 0.82287 0.82951 0.86168 1.90651 1.52717 1.74070 1.26478 1.46493 1.49566 1.12250 1.27926 1.19094 0.89178 0.88014 0.90946 1.21241 1.30629 0.96536 1.09774 0.91899 1.24960 0.95044 0.99181 0.94883 1.69977 1.30030 1.34291 1.18005 0.86413 0.77553 0.83371 0.79556 1.20470 1.21004 1.19749 1.22205 1.01140 0.78945 0.97022 0.92177 0.91126 0.89310 0.91521 0.90129 0.91483 0.89340 0.91130 0.92245 0.90257 0.91197 0.90004 0.89324 0.90308 0.90746 0.89449 0.89334 0.77708 0.95601 0.95591 0.92465 0.90883 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.19 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.83 8.85 37.15 0.33 -0.50 16 4 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 5 O -0.36 -3.91 9.42 -40.32 -0.38 -4.29 16 6 C 0.67 8.24 7.93 54.06 0.43 8.67 16 7 O -0.57 -8.29 12.21 -19.27 -0.24 -8.52 16 8 N -0.61 -6.40 3.34 -175.92 -0.59 -6.98 16 9 C 0.10 0.80 6.92 -2.52 -0.02 0.78 16 10 C -0.13 -0.93 6.53 -24.58 -0.16 -1.09 16 11 C -0.10 -0.84 2.94 -88.79 -0.26 -1.10 16 12 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.09 -1.03 3.90 -26.73 -0.10 -1.14 16 14 C -0.14 -1.83 5.57 -27.88 -0.16 -1.98 16 15 C 0.50 9.54 7.83 -10.98 -0.09 9.45 16 16 O -0.56 -13.13 15.98 5.56 0.09 -13.04 16 17 N -0.71 -14.90 5.55 -61.47 -0.34 -15.24 16 18 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 19 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 20 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.13 1.28 5.76 -2.81 -0.02 1.27 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 43 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 LS Contribution 402.35 15.07 6.06 6.06 Total: -1.00 -34.29 402.35 -8.51 -42.80 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.87 Total: 2.81 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 0.03 Total: 5.96 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.19 Total: -47.70 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.53 Total: -25.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.29 -8.51 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.910 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds