Wall clock time and date at job start Tue Mar 31 2020 14:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47479 * 2 1 4 4 C 1.52997 * 109.46595 * 240.00087 * 2 1 3 5 5 O 1.45198 * 109.46984 * 120.00421 * 2 1 3 6 6 C 1.34638 * 116.99933 * 59.99694 * 5 2 1 7 7 O 1.21504 * 120.00206 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99743 * 179.97438 * 6 5 2 9 9 C 1.47428 * 125.64860 * 359.97438 * 8 6 5 10 10 C 1.54915 * 104.83102 * 155.91040 * 9 8 6 11 11 C 1.55153 * 101.58175 * 37.00975 * 10 9 8 12 12 H 1.09002 * 110.72030 * 82.86195 * 11 10 9 13 13 C 1.53003 * 110.71957 * 205.95687 * 11 10 9 14 14 C 1.53003 * 109.46894 * 182.56024 * 13 11 10 15 15 C 1.50704 * 109.46721 * 179.97438 * 14 13 11 16 16 O 1.21272 * 120.00166 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99571 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99723 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47149 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99893 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47115 * 89.99835 * 23 21 19 25 25 H 1.48499 * 109.47236 * 210.00016 * 23 21 19 26 26 H 1.48496 * 109.47103 * 330.00163 * 23 21 19 27 27 C 1.47486 * 125.59413 * 179.97438 * 8 6 5 28 28 H 1.09006 * 109.46611 * 299.99756 * 1 2 3 29 29 H 1.09000 * 109.47522 * 59.99359 * 1 2 3 30 30 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47266 * 300.00797 * 3 2 1 33 33 H 1.08998 * 109.46856 * 60.00154 * 3 2 1 34 34 H 1.09002 * 109.47547 * 299.99953 * 4 2 1 35 35 H 1.09002 * 109.47465 * 60.00039 * 4 2 1 36 36 H 1.09001 * 109.47388 * 180.02562 * 4 2 1 37 37 H 1.09000 * 110.36462 * 37.07589 * 9 8 6 38 38 H 1.08998 * 110.36847 * 274.74797 * 9 8 6 39 39 H 1.09003 * 111.00447 * 278.93450 * 10 9 8 40 40 H 1.09001 * 111.00309 * 155.08732 * 10 9 8 41 41 H 1.09001 * 109.47158 * 302.56200 * 13 11 10 42 42 H 1.09002 * 109.47171 * 62.55730 * 13 11 10 43 43 H 1.09004 * 109.47098 * 299.99587 * 14 13 11 44 44 H 1.08993 * 109.46975 * 60.00219 * 14 13 11 45 45 H 0.96993 * 120.00521 * 0.02562 * 17 15 14 46 46 H 1.08993 * 109.47589 * 300.00653 * 18 17 15 47 47 H 1.09003 * 109.46897 * 60.00975 * 18 17 15 48 48 H 0.96999 * 119.99562 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.02886 * 61.64190 * 27 8 6 50 50 H 1.09005 * 109.96368 * 300.33047 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6521 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0679 -2.6658 2.4165 9 6 2.9186 -2.1408 3.5001 10 6 2.6019 -3.0377 4.7228 11 6 2.4169 -4.4246 4.0522 12 1 3.3812 -4.9060 3.8897 13 6 1.5041 -5.3165 4.8963 14 6 1.3927 -6.6955 4.2429 15 6 0.4942 -7.5742 5.0746 16 8 -0.0079 -7.1401 6.0895 17 7 0.2479 -8.8422 4.6898 18 6 -0.6251 -9.6966 5.4985 19 6 -0.7350 -11.0548 4.8550 20 1 -0.2070 -11.2611 3.9357 21 6 -1.5096 -12.0341 5.4398 22 7 -2.1530 -11.7827 6.5589 23 14 -1.6452 -13.7180 4.6424 24 1 -0.5729 -14.6016 5.1664 25 1 -2.9710 -14.3089 4.9560 26 1 -1.4995 -13.5820 3.1709 27 6 1.7466 -4.0757 2.7067 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2492 37 1 2.6626 -1.1032 3.7143 38 1 3.9714 -2.2248 3.2305 39 1 1.6843 -2.7165 5.2158 40 1 3.4362 -3.0510 5.4242 41 1 1.9230 -5.4214 5.8971 42 1 0.5144 -4.8646 4.9622 43 1 0.9738 -6.5906 3.2421 44 1 2.3824 -7.1474 4.1770 45 1 0.6492 -9.1893 3.8778 46 1 -0.2053 -9.8018 6.4989 47 1 -1.6149 -9.2448 5.5655 48 1 -2.6982 -12.4716 6.9701 49 1 2.1402 -4.7181 1.9190 50 1 0.6669 -4.2025 2.7864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:40 Heat of formation + Delta-G solvation = -161.910528 kcal Electronic energy + Delta-G solvation = -27690.594039 eV Core-core repulsion = 23716.148432 eV Total energy + Delta-G solvation = -3974.445607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86838 -40.62451 -39.71063 -37.68775 -36.17802 -35.38726 -34.56398 -34.31034 -31.71395 -29.98362 -28.90243 -28.37121 -28.28552 -26.31831 -24.73197 -23.40023 -22.69443 -21.32448 -20.92434 -20.41058 -19.07715 -18.72859 -17.88084 -17.49550 -17.32278 -17.03173 -16.82135 -16.22809 -16.10386 -15.95789 -15.37866 -14.91855 -14.78096 -14.58909 -14.38917 -14.10198 -14.02212 -13.93111 -13.56198 -13.38744 -13.33114 -13.09959 -12.96305 -12.88777 -12.88477 -12.85851 -12.71258 -12.45682 -12.31505 -12.23455 -12.17559 -11.89254 -11.59553 -11.55001 -11.48384 -11.39290 -11.11339 -10.80585 -10.69044 -9.80084 -9.78943 -8.29773 -6.46418 1.06149 1.42513 1.44971 1.56228 1.73143 1.83249 2.33015 2.64744 2.90075 3.04972 3.51836 3.61812 3.75581 3.78918 3.81269 3.94833 3.98029 4.29562 4.32246 4.34322 4.45323 4.51365 4.60835 4.61265 4.69779 4.73691 4.75920 4.76003 4.83936 4.88134 4.89915 4.95968 5.04301 5.08962 5.13549 5.16173 5.22462 5.24432 5.27633 5.31222 5.35432 5.44337 5.47920 5.50977 5.71713 5.85523 6.40940 6.65388 6.94980 7.23401 7.24294 7.54500 8.82413 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001883 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.790949 B =14866.332285 C =15670.194937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.178 4.178 5 O -0.364 6.364 6 C 0.657 3.343 7 O -0.597 6.597 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.084 4.084 12 H 0.117 0.883 13 C -0.086 4.086 14 C -0.129 4.129 15 C 0.490 3.510 16 O -0.607 6.607 17 N -0.712 5.712 18 C 0.264 3.736 19 C -0.557 4.557 20 H 0.084 0.916 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.985 3.015 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.256 1.256 27 C 0.124 3.876 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.409 0.591 46 H -0.013 1.013 47 H -0.016 1.016 48 H 0.268 0.732 49 H 0.077 0.923 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.629 26.235 -13.774 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.413 3.587 7 O -0.489 6.489 8 N -0.350 5.350 9 C -0.018 4.018 10 C -0.162 4.162 11 C -0.103 4.103 12 H 0.135 0.865 13 C -0.124 4.124 14 C -0.169 4.169 15 C 0.278 3.722 16 O -0.490 6.490 17 N -0.361 5.361 18 C 0.141 3.859 19 C -0.595 4.595 20 H 0.102 0.898 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.808 3.192 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.180 1.180 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.126 0.874 44 H 0.143 0.857 45 H 0.244 0.756 46 H 0.005 0.995 47 H 0.002 0.998 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.911 26.413 -13.315 33.125 hybrid contribution -0.762 -1.250 -0.239 1.483 sum 14.150 25.164 -13.554 31.892 Atomic orbital electron populations 1.22477 0.94364 1.03408 1.03521 1.22429 0.94350 0.92896 0.81602 1.21866 1.02523 0.90355 1.04299 1.22460 1.01693 1.02060 0.97352 1.86305 1.71485 1.22721 1.47345 1.17752 0.78675 0.80857 0.81428 1.90901 1.42651 1.71188 1.44115 1.47466 1.53041 1.13032 1.21419 1.22537 0.95003 0.98947 0.85336 1.22890 1.03851 0.92837 0.96581 1.22242 0.99913 0.96142 0.92014 0.86492 1.21244 0.99507 0.92605 0.99083 1.21772 1.00577 0.95030 0.99519 1.21752 0.81920 0.82568 0.85954 1.90628 1.54573 1.74807 1.28954 1.46272 1.49149 1.12595 1.28118 1.18521 0.87904 0.89142 0.90320 1.21644 1.30793 0.96583 1.10449 0.89809 1.26086 0.94354 1.03994 0.95296 1.70141 1.30964 1.35989 1.19870 0.85149 0.77527 0.77355 0.79135 1.19459 1.21002 1.18009 1.22237 1.00176 0.79136 0.98148 0.92145 0.89043 0.92417 0.90950 0.88008 0.91259 0.92296 0.89121 0.91737 0.89914 0.89299 0.91151 0.86802 0.90887 0.93099 0.87373 0.85676 0.75580 0.99469 0.99804 0.92271 0.90455 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.12 2.05 1.13 -10.80 -0.01 2.04 16 3 C -0.13 -1.28 8.85 71.98 0.64 -0.65 16 4 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 5 O -0.36 -7.62 9.42 -55.47 -0.52 -8.14 16 6 C 0.66 16.28 7.93 129.79 1.03 17.31 16 7 O -0.60 -18.10 12.21 19.83 0.24 -17.85 16 8 N -0.61 -12.31 3.34 -940.89 -3.14 -15.45 16 9 C 0.10 1.36 6.92 86.86 0.60 1.96 16 10 C -0.12 -1.49 6.53 31.99 0.21 -1.28 16 11 C -0.08 -1.21 2.94 -9.61 -0.03 -1.24 16 12 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 13 C -0.09 -1.85 3.90 30.60 0.12 -1.73 16 14 C -0.13 -3.03 5.57 29.85 0.17 -2.86 16 15 C 0.49 19.01 7.83 87.66 0.69 19.69 16 16 O -0.61 -29.70 15.98 -3.01 -0.05 -29.75 16 17 N -0.71 -29.97 5.55 -466.79 -2.59 -32.56 16 18 C 0.26 14.69 5.43 85.63 0.46 15.16 16 19 C -0.56 -30.61 9.28 25.60 0.24 -30.38 16 20 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 21 C 0.00 0.12 5.46 84.65 0.46 0.59 16 22 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 23 Si 0.99 42.66 29.54 68.60 2.03 44.69 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 27 C 0.12 2.36 5.76 86.64 0.50 2.86 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.05 8.04 -2.39 -0.02 1.03 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.68 8.10 -2.39 -0.02 1.67 16 42 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 43 H 0.11 2.17 7.58 -2.38 -0.02 2.15 16 44 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.41 14.07 8.32 -92.71 -0.77 13.29 16 46 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 50 H 0.06 1.29 7.73 -2.38 -0.02 1.27 16 Total: -1.00 -79.79 402.35 2.67 -77.11 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.14 Total: 21.80 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.28 Total: 16.57 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -5.45 Total: -104.44 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.33 Total: -55.74 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -79.79 2.67 -77.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.797 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds