Wall clock time and date at job start Tue Mar 31 2020 14:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47125 * 2 1 4 4 C 1.53001 * 109.46704 * 239.99884 * 2 1 3 5 5 O 1.45196 * 109.47338 * 120.00091 * 2 1 3 6 6 C 1.34641 * 116.99872 * 59.99757 * 5 2 1 7 7 O 1.21509 * 120.00469 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99690 * 179.97438 * 6 5 2 9 9 C 1.46509 * 119.99620 * 184.99487 * 8 6 5 10 10 C 1.50701 * 109.47157 * 54.93902 * 9 8 6 11 11 O 1.21275 * 119.99854 * 216.03766 * 10 9 8 12 12 N 1.34783 * 119.99901 * 36.03601 * 10 9 8 13 13 C 1.46499 * 119.99803 * 175.00118 * 12 10 9 14 14 C 1.50701 * 109.47084 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99683 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00025 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00436 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00035 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47334 * 89.99726 * 18 16 14 20 20 H 1.48493 * 109.47265 * 209.99989 * 18 16 14 21 21 H 1.48502 * 109.47055 * 329.99924 * 18 16 14 22 22 C 1.52995 * 109.47058 * 294.93618 * 9 8 6 23 23 C 1.52998 * 109.47371 * 300.00315 * 22 9 8 24 24 C 1.53003 * 109.46984 * 300.00008 * 23 22 9 25 25 C 1.52995 * 109.47073 * 59.99809 * 24 23 22 26 26 C 1.52995 * 109.47530 * 300.00287 * 25 24 23 27 27 H 1.08996 * 109.46849 * 299.99705 * 1 2 3 28 28 H 1.08995 * 109.47311 * 59.99801 * 1 2 3 29 29 H 1.09007 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46931 * 300.00258 * 3 2 1 32 32 H 1.08999 * 109.47500 * 60.00284 * 3 2 1 33 33 H 1.08998 * 109.47952 * 299.99973 * 4 2 1 34 34 H 1.09009 * 109.46845 * 60.00271 * 4 2 1 35 35 H 1.09008 * 109.47024 * 179.97438 * 4 2 1 36 36 H 0.96997 * 120.00318 * 4.71738 * 8 6 5 37 37 H 0.96997 * 120.00136 * 355.01237 * 12 10 9 38 38 H 1.09004 * 109.47316 * 300.00406 * 13 12 10 39 39 H 1.09004 * 109.46811 * 60.00154 * 13 12 10 40 40 H 0.96997 * 120.00629 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46942 * 60.00386 * 22 9 8 42 42 H 1.08995 * 109.47105 * 180.02562 * 22 9 8 43 43 H 1.09005 * 109.47160 * 180.02562 * 23 22 9 44 44 H 1.08995 * 109.47056 * 59.99909 * 23 22 9 45 45 H 1.08995 * 109.47143 * 299.99848 * 24 23 22 46 46 H 1.09003 * 109.46756 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.46942 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.47079 * 60.00003 * 25 24 23 49 49 H 1.09005 * 109.46707 * 299.99943 * 26 25 24 50 50 H 1.09002 * 109.47561 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5098 0.5036 8 7 2.0681 -2.6657 2.4166 9 6 1.7670 -4.0951 2.5291 10 6 2.2712 -4.8127 1.3036 11 8 1.6445 -5.7446 0.8458 12 7 3.4186 -4.4188 0.7163 13 6 3.9661 -5.1827 -0.4074 14 6 5.2443 -4.5378 -0.8780 15 1 5.6122 -3.6482 -0.3885 16 6 5.9439 -5.0836 -1.9333 17 7 7.0596 -4.5211 -2.3436 18 14 5.3071 -6.6219 -2.7802 19 1 4.4095 -6.2358 -3.8984 20 1 6.4519 -7.4041 -3.3120 21 1 4.5537 -7.4488 -1.8036 22 6 0.2541 -4.2897 2.6478 23 6 -0.2578 -3.5611 3.8920 24 6 0.4287 -4.1306 5.1351 25 6 1.9416 -3.9360 5.0164 26 6 2.4535 -4.6645 3.7722 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 2.5703 -2.2193 3.1162 37 1 3.8820 -3.6296 1.0379 38 1 4.1714 -6.2041 -0.0868 39 1 3.2437 -5.1964 -1.2236 40 1 7.5521 -4.9053 -3.0858 41 1 -0.2350 -3.8840 1.7622 42 1 0.0301 -5.3530 2.7320 43 1 -1.3356 -3.7001 3.9768 44 1 -0.0337 -2.4977 3.8082 45 1 0.2047 -5.1940 5.2189 46 1 0.0643 -3.6112 6.0214 47 1 2.4306 -4.3413 5.9022 48 1 2.1657 -2.8725 4.9326 49 1 2.2295 -5.7280 3.8560 50 1 3.5315 -4.5262 3.6879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:06 Heat of formation + Delta-G solvation = -135.868514 kcal Electronic energy + Delta-G solvation = -30845.677999 eV Core-core repulsion = 26872.361658 eV Total energy + Delta-G solvation = -3973.316341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18226 -39.72694 -37.65807 -36.63729 -34.43524 -34.14375 -33.44895 -32.23439 -30.92343 -29.91768 -27.85880 -27.38802 -27.20012 -23.92475 -22.87272 -22.72465 -21.68779 -20.05927 -20.03064 -19.07012 -18.17681 -17.54290 -16.33439 -16.31843 -15.87127 -15.67600 -15.00055 -14.78954 -14.53973 -14.38394 -14.23203 -13.89443 -13.84421 -13.45967 -13.28206 -12.77464 -12.61302 -12.47757 -12.37820 -12.32054 -12.22170 -12.11661 -11.86667 -11.82495 -11.72959 -11.39917 -11.23017 -11.17388 -11.00131 -10.74644 -10.69216 -10.65315 -10.38972 -10.23528 -9.94826 -9.80416 -9.57322 -9.44733 -8.74799 -8.72665 -8.07554 -6.19058 -4.20537 2.17524 3.00311 3.24760 3.29531 3.35124 3.43865 3.91933 4.18378 4.35854 4.58712 4.63005 4.74176 4.78957 4.83024 4.98767 5.03340 5.15036 5.16794 5.29979 5.37024 5.38858 5.47700 5.49715 5.59690 5.63174 5.69676 5.71031 5.83263 5.87459 5.90876 5.96965 5.99952 6.01982 6.08194 6.10494 6.19009 6.34043 6.43027 6.45383 6.62477 6.66965 6.85231 7.12176 7.27400 7.43755 7.50039 8.16039 8.52816 8.56098 8.77564 8.96459 9.41630 10.92914 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.005388 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.264724 B = 5195.098781 C = 7166.954650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.139 3.861 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.185 3.815 10 C 0.509 3.491 11 O -0.547 6.547 12 N -0.697 5.697 13 C 0.222 3.778 14 C -0.539 4.539 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.261 1.261 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.393 0.607 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.267 0.733 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 9.266 14.117 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.102 3.898 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.433 6.433 8 N -0.367 5.367 9 C 0.097 3.903 10 C 0.292 3.708 11 O -0.425 6.425 12 N -0.345 5.345 13 C 0.100 3.900 14 C -0.577 4.577 15 H 0.095 0.905 16 C -0.125 4.125 17 N -0.530 5.530 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.226 0.774 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.786 8.352 13.127 20.138 hybrid contribution 0.355 -0.086 -0.254 0.445 sum -12.430 8.266 12.873 19.712 Atomic orbital electron populations 1.22504 0.94316 1.05015 1.02037 1.22051 0.93984 0.91378 0.82394 1.21850 1.02539 0.92611 1.02677 1.22521 1.02409 1.03571 0.95720 1.86269 1.71537 1.23667 1.46527 1.18068 0.79015 0.80556 0.82045 1.90949 1.39818 1.69826 1.42748 1.44842 1.60551 1.09151 1.22191 1.20571 0.97166 0.77773 0.94839 1.20347 0.81349 0.84472 0.84652 1.90642 1.56987 1.30623 1.64233 1.46070 1.23565 1.30327 1.34562 1.19477 0.94056 0.91981 0.84503 1.21058 1.05714 1.13646 1.17286 0.90455 1.24768 0.94457 0.97094 0.96166 1.69876 1.15564 1.40345 1.27256 0.86836 0.78785 0.83577 0.80608 1.19853 1.20935 1.18560 1.21777 0.92367 1.02113 0.99261 1.21506 0.99636 0.99968 0.94171 1.21578 0.95018 1.01439 0.97813 1.21530 0.96197 1.00466 0.97231 1.21805 1.00527 1.01443 0.92039 0.92550 0.91330 0.89330 0.91268 0.90298 0.91818 0.89050 0.91509 0.91487 0.75864 0.77396 0.95891 0.96148 0.92332 0.89451 0.90014 0.91856 0.92093 0.91692 0.92009 0.91140 0.91803 0.89189 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.37 37.16 0.31 -1.88 16 2 C 0.14 1.82 1.13 -90.62 -0.10 1.72 16 3 C -0.14 -1.41 8.85 37.16 0.33 -1.09 16 4 C -0.19 -2.84 8.37 37.16 0.31 -2.53 16 5 O -0.36 -5.26 9.94 -40.33 -0.40 -5.66 16 6 C 0.65 10.16 7.03 54.06 0.38 10.54 16 7 O -0.55 -10.14 9.16 -19.28 -0.18 -10.31 16 8 N -0.70 -9.20 3.41 -53.55 -0.18 -9.38 16 9 C 0.18 2.67 0.59 -132.97 -0.08 2.59 16 10 C 0.51 10.24 5.17 -10.98 -0.06 10.18 16 11 O -0.55 -13.03 16.09 5.56 0.09 -12.94 16 12 N -0.70 -15.01 5.23 -61.47 -0.32 -15.33 16 13 C 0.22 5.70 4.50 -5.19 -0.02 5.67 16 14 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 15 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 22 C -0.12 -1.63 4.11 -26.73 -0.11 -1.74 16 23 C -0.12 -1.20 5.77 -26.73 -0.15 -1.35 16 24 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 25 C -0.12 -0.97 5.75 -26.74 -0.15 -1.12 16 26 C -0.12 -1.35 4.78 -26.73 -0.13 -1.48 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.30 5.88 -51.92 -0.31 0.99 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.71 5.88 -51.93 -0.31 1.40 16 34 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.41 4.14 7.28 -40.82 -0.30 3.85 16 37 H 0.39 7.83 7.47 -40.82 -0.30 7.52 16 38 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 39 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 1.47 6.38 -51.93 -0.33 1.14 16 42 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.48 6.77 -51.93 -0.35 0.13 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -33.60 383.56 -7.72 -41.31 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.54 Total: 10.19 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.07 Total: 5.03 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.27 Total: -50.71 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.49 Total: -28.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.60 -7.72 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.554 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds