Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47125 * 2 1 4 4 C 1.53001 * 109.46704 * 239.99884 * 2 1 3 5 5 O 1.45196 * 109.47338 * 120.00091 * 2 1 3 6 6 C 1.34641 * 116.99872 * 59.99757 * 5 2 1 7 7 O 1.21509 * 120.00469 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99690 * 179.97438 * 6 5 2 9 9 C 1.46509 * 119.99620 * 184.99487 * 8 6 5 10 10 C 1.50701 * 109.47157 * 54.93902 * 9 8 6 11 11 O 1.21275 * 119.99854 * 216.03766 * 10 9 8 12 12 N 1.34783 * 119.99901 * 36.03601 * 10 9 8 13 13 C 1.46499 * 119.99803 * 175.00118 * 12 10 9 14 14 C 1.50701 * 109.47084 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99683 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00025 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00436 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00035 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47334 * 89.99726 * 18 16 14 20 20 H 1.48493 * 109.47265 * 209.99989 * 18 16 14 21 21 H 1.48502 * 109.47055 * 329.99924 * 18 16 14 22 22 C 1.52995 * 109.47058 * 294.93618 * 9 8 6 23 23 C 1.52998 * 109.47371 * 300.00315 * 22 9 8 24 24 C 1.53003 * 109.46984 * 300.00008 * 23 22 9 25 25 C 1.52995 * 109.47073 * 59.99809 * 24 23 22 26 26 C 1.52995 * 109.47530 * 300.00287 * 25 24 23 27 27 H 1.08996 * 109.46849 * 299.99705 * 1 2 3 28 28 H 1.08995 * 109.47311 * 59.99801 * 1 2 3 29 29 H 1.09007 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46931 * 300.00258 * 3 2 1 32 32 H 1.08999 * 109.47500 * 60.00284 * 3 2 1 33 33 H 1.08998 * 109.47952 * 299.99973 * 4 2 1 34 34 H 1.09009 * 109.46845 * 60.00271 * 4 2 1 35 35 H 1.09008 * 109.47024 * 179.97438 * 4 2 1 36 36 H 0.96997 * 120.00318 * 4.71738 * 8 6 5 37 37 H 0.96997 * 120.00136 * 355.01237 * 12 10 9 38 38 H 1.09004 * 109.47316 * 300.00406 * 13 12 10 39 39 H 1.09004 * 109.46811 * 60.00154 * 13 12 10 40 40 H 0.96997 * 120.00629 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46942 * 60.00386 * 22 9 8 42 42 H 1.08995 * 109.47105 * 180.02562 * 22 9 8 43 43 H 1.09005 * 109.47160 * 180.02562 * 23 22 9 44 44 H 1.08995 * 109.47056 * 59.99909 * 23 22 9 45 45 H 1.08995 * 109.47143 * 299.99848 * 24 23 22 46 46 H 1.09003 * 109.46756 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.46942 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.47079 * 60.00003 * 25 24 23 49 49 H 1.09005 * 109.46707 * 299.99943 * 26 25 24 50 50 H 1.09002 * 109.47561 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5098 0.5036 8 7 2.0681 -2.6657 2.4166 9 6 1.7670 -4.0951 2.5291 10 6 2.2712 -4.8127 1.3036 11 8 1.6445 -5.7446 0.8458 12 7 3.4186 -4.4188 0.7163 13 6 3.9661 -5.1827 -0.4074 14 6 5.2443 -4.5378 -0.8780 15 1 5.6122 -3.6482 -0.3885 16 6 5.9439 -5.0836 -1.9333 17 7 7.0596 -4.5211 -2.3436 18 14 5.3071 -6.6219 -2.7802 19 1 4.4095 -6.2358 -3.8984 20 1 6.4519 -7.4041 -3.3120 21 1 4.5537 -7.4488 -1.8036 22 6 0.2541 -4.2897 2.6478 23 6 -0.2578 -3.5611 3.8920 24 6 0.4287 -4.1306 5.1351 25 6 1.9416 -3.9360 5.0164 26 6 2.4535 -4.6645 3.7722 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 2.5703 -2.2193 3.1162 37 1 3.8820 -3.6296 1.0379 38 1 4.1714 -6.2041 -0.0868 39 1 3.2437 -5.1964 -1.2236 40 1 7.5521 -4.9053 -3.0858 41 1 -0.2350 -3.8840 1.7622 42 1 0.0301 -5.3530 2.7320 43 1 -1.3356 -3.7001 3.9768 44 1 -0.0337 -2.4977 3.8082 45 1 0.2047 -5.1940 5.2189 46 1 0.0643 -3.6112 6.0214 47 1 2.4306 -4.3413 5.9022 48 1 2.1657 -2.8725 4.9326 49 1 2.2295 -5.7280 3.8560 50 1 3.5315 -4.5262 3.6879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -159.531221 kcal Electronic energy + Delta-G solvation = -30846.704091 eV Core-core repulsion = 26872.361658 eV Total energy + Delta-G solvation = -3974.342433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43808 -41.01050 -39.09765 -37.76853 -36.27516 -35.43540 -34.68245 -34.20224 -31.85000 -31.09444 -29.82546 -28.36082 -28.27429 -25.33626 -24.17901 -23.73776 -23.26274 -21.52451 -21.15573 -20.26495 -19.44032 -19.20433 -18.15204 -17.52672 -17.17842 -16.96023 -16.56063 -16.31844 -15.87275 -15.69615 -15.50501 -15.23890 -14.94868 -14.75633 -14.53355 -14.48339 -14.18820 -13.82039 -13.42707 -13.35938 -13.33077 -13.17541 -13.11025 -13.02058 -12.89238 -12.83369 -12.76506 -12.51766 -12.29040 -12.09870 -11.98355 -11.77736 -11.68673 -11.48022 -11.37508 -11.27668 -11.09339 -10.96695 -10.79350 -10.16190 -9.98066 -8.44537 -6.51268 0.99887 1.26923 1.28980 1.41597 1.65615 1.76581 2.23001 2.34897 2.90337 3.08294 3.55337 3.59137 3.74887 3.76551 3.81299 3.95729 4.11158 4.19682 4.23222 4.44801 4.49768 4.53463 4.60357 4.63049 4.70164 4.74698 4.77684 4.77977 4.84885 4.90051 4.94238 4.99090 5.08886 5.12654 5.16297 5.18549 5.21543 5.23498 5.30382 5.33888 5.37134 5.39675 5.45308 5.53894 5.57618 6.02585 6.37189 6.46840 6.73195 7.09880 7.28813 7.35348 8.70172 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.005388 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.264724 B = 5195.098781 C = 7166.954650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.131 3.869 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.644 3.356 7 O -0.578 6.578 8 N -0.689 5.689 9 C 0.196 3.804 10 C 0.503 3.497 11 O -0.588 6.588 12 N -0.698 5.698 13 C 0.236 3.764 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.033 3.967 17 N -0.926 5.926 18 Si 0.933 3.067 19 H -0.270 1.270 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.110 4.110 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.422 0.578 37 H 0.400 0.600 38 H 0.016 0.984 39 H -0.002 1.002 40 H 0.273 0.727 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 10.433 16.317 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.094 3.906 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.398 3.602 7 O -0.467 6.467 8 N -0.353 5.353 9 C 0.108 3.892 10 C 0.289 3.711 11 O -0.468 6.468 12 N -0.347 5.347 13 C 0.112 3.888 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.168 4.168 17 N -0.565 5.565 18 Si 0.757 3.243 19 H -0.195 1.195 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.156 4.156 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.235 0.765 38 H 0.034 0.966 39 H 0.016 0.984 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.433 9.560 15.375 22.543 hybrid contribution 0.556 -0.404 -0.995 1.209 sum -12.877 9.156 14.380 21.364 Atomic orbital electron populations 1.22424 0.93311 1.03565 1.03841 1.22344 0.94893 0.92549 0.80785 1.21868 1.02197 0.90306 1.04641 1.22466 1.01026 1.01997 0.98391 1.86287 1.71477 1.22909 1.47058 1.18330 0.78743 0.80968 0.82153 1.90959 1.41233 1.70547 1.43998 1.44691 1.60132 1.08433 1.22046 1.20480 0.97680 0.77885 0.93195 1.21436 0.80017 0.84003 0.85629 1.90608 1.57806 1.32610 1.65744 1.45937 1.24410 1.30437 1.33894 1.19060 0.92544 0.91944 0.85242 1.21168 1.06495 1.13065 1.17370 0.92609 1.25514 0.94591 0.99949 0.96778 1.69962 1.16605 1.41886 1.28021 0.85929 0.78700 0.80199 0.79494 1.19548 1.19081 1.18647 1.21721 0.91646 1.01786 0.99976 1.21467 1.00300 0.99532 0.93125 1.21587 0.94860 1.01702 0.97380 1.21553 0.96111 1.00954 0.96086 1.21887 1.00528 1.01523 0.91677 0.90824 0.89397 0.92348 0.91833 0.88158 0.90020 0.92927 0.89355 0.93397 0.73801 0.76515 0.96616 0.98401 0.91742 0.92859 0.91083 0.91020 0.91860 0.91642 0.89539 0.88739 0.90402 0.89568 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.37 71.98 0.60 -3.44 16 2 C 0.13 3.35 1.13 -10.79 -0.01 3.34 16 3 C -0.13 -2.40 8.85 71.98 0.64 -1.76 16 4 C -0.18 -5.74 8.37 71.98 0.60 -5.13 16 5 O -0.36 -10.28 9.94 -55.50 -0.55 -10.83 16 6 C 0.64 20.40 7.03 129.79 0.91 21.31 16 7 O -0.58 -22.50 9.16 19.81 0.18 -22.32 16 8 N -0.69 -17.54 3.41 -553.74 -1.89 -19.43 16 9 C 0.20 5.63 0.59 2.85 0.00 5.64 16 10 C 0.50 20.91 5.17 87.66 0.45 21.36 16 11 O -0.59 -29.18 16.09 -3.02 -0.05 -29.23 16 12 N -0.70 -31.13 5.23 -466.78 -2.44 -33.57 16 13 C 0.24 12.52 4.50 85.63 0.39 12.90 16 14 C -0.54 -31.39 9.83 25.60 0.25 -31.14 16 15 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 16 C 0.03 1.89 5.47 84.65 0.46 2.36 16 17 N -0.93 -56.20 13.96 21.45 0.30 -55.90 16 18 Si 0.93 45.85 27.47 68.60 1.88 47.73 16 19 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -12.84 6.54 99.48 0.65 -12.18 16 22 C -0.11 -3.17 4.11 30.59 0.13 -3.04 16 23 C -0.11 -2.01 5.77 30.59 0.18 -1.83 16 24 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 25 C -0.11 -1.42 5.75 30.59 0.18 -1.25 16 26 C -0.12 -2.46 4.78 30.59 0.15 -2.31 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.75 5.88 -2.38 -0.01 1.73 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 2.08 5.88 -2.39 -0.01 2.07 16 34 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.42 7.79 7.28 -92.71 -0.68 7.11 16 37 H 0.40 16.44 7.47 -92.71 -0.69 15.75 16 38 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 39 H 0.00 -0.11 7.57 -2.38 -0.02 -0.13 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.05 1.87 6.38 -2.39 -0.02 1.86 16 42 H 0.07 2.12 7.87 -2.39 -0.02 2.11 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.83 6.77 -2.38 -0.02 0.81 16 49 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -76.73 383.56 2.06 -74.67 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.48 Total: 33.30 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.10 Total: 15.58 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.03 Total: -108.90 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -0.42 Total: -62.38 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -76.73 2.06 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.864 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds