Wall clock time and date at job start Tue Mar 31 2020 15:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46556 * 2 1 4 4 H 1.08997 * 110.00101 * 53.16385 * 3 2 1 5 5 C 1.54333 * 109.99294 * 292.12308 * 3 2 1 6 6 H 1.08997 * 110.66753 * 337.04655 * 5 3 2 7 7 C 1.50698 * 110.84950 * 100.20423 * 5 3 2 8 8 O 1.21280 * 120.00298 * 355.14300 * 7 5 3 9 9 N 1.34774 * 119.99997 * 175.14495 * 7 5 3 10 10 C 1.46501 * 120.00110 * 179.97438 * 9 7 5 11 11 C 1.50701 * 109.47021 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99714 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00010 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99928 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47139 * 120.00227 * 15 13 11 18 18 H 1.48498 * 109.47486 * 240.00491 * 15 13 11 19 19 C 1.55157 * 103.01829 * 218.67054 * 5 3 2 20 20 C 1.54912 * 101.58614 * 35.30642 * 19 5 3 21 21 N 1.47030 * 109.87649 * 174.25731 * 3 2 1 22 22 C 1.34776 * 125.64695 * 298.39425 * 21 3 2 23 23 O 1.21508 * 119.99873 * 354.85282 * 22 21 3 24 24 O 1.34637 * 119.99498 * 174.57969 * 22 21 3 25 25 C 1.45207 * 116.99483 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.46862 * 60.00476 * 25 24 22 27 27 C 1.53005 * 109.46807 * 179.97438 * 25 24 22 28 28 C 1.52993 * 109.47366 * 299.99934 * 25 24 22 29 29 H 1.09000 * 109.46896 * 185.17028 * 1 2 3 30 30 H 1.09005 * 109.46848 * 305.17094 * 1 2 3 31 31 H 1.08997 * 109.47390 * 65.17347 * 1 2 3 32 32 H 1.08995 * 109.46813 * 240.00765 * 2 1 3 33 33 H 1.09000 * 109.47128 * 119.99825 * 2 1 3 34 34 H 0.97006 * 120.00129 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.46886 * 299.99905 * 10 9 7 36 36 H 1.08997 * 109.47049 * 59.99890 * 10 9 7 37 37 H 0.97006 * 120.00062 * 179.97438 * 14 13 11 38 38 H 1.09008 * 111.00435 * 277.23379 * 19 5 3 39 39 H 1.09000 * 111.03711 * 153.39670 * 19 5 3 40 40 H 1.08997 * 110.36727 * 204.15605 * 20 19 5 41 41 H 1.09003 * 110.36171 * 81.82836 * 20 19 5 42 42 H 1.09001 * 109.47696 * 59.99790 * 26 25 24 43 43 H 1.08999 * 109.46738 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46929 * 299.99655 * 26 25 24 45 45 H 1.08998 * 109.46728 * 60.00241 * 27 25 24 46 46 H 1.08999 * 109.47017 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.47430 * 300.00693 * 27 25 24 48 48 H 1.09005 * 109.47179 * 60.00525 * 28 25 24 49 49 H 1.08999 * 109.47280 * 180.02562 * 28 25 24 50 50 H 1.08998 * 109.47344 * 300.00479 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5852 1.9987 0.8197 5 6 1.7008 2.1221 -1.3435 6 1 1.5555 1.3770 -2.1257 7 6 0.4807 2.9965 -1.2095 8 8 -0.1386 3.0176 -0.1670 9 7 0.0778 3.7550 -2.2481 10 6 -1.1085 4.6046 -2.1180 11 6 -1.3418 5.3430 -3.4108 12 1 -0.6730 5.1947 -4.2457 13 6 -2.4091 6.2081 -3.5277 14 7 -3.2232 6.3891 -2.5108 15 14 -2.6979 7.1239 -5.1299 16 1 -1.6483 6.7482 -6.1109 17 1 -4.0329 6.7644 -5.6719 18 1 -2.6423 8.5868 -4.8809 19 6 2.9619 2.9795 -1.6297 20 6 4.0867 2.0765 -1.0648 21 7 3.5036 1.4554 0.1384 22 6 4.1976 0.9739 1.1886 23 8 3.6087 0.5616 2.1682 24 8 5.5431 0.9448 1.1500 25 6 6.2246 0.4135 2.3169 26 6 5.7885 -1.0349 2.5467 27 6 7.7369 0.4602 2.0894 28 6 5.8667 1.2547 3.5436 29 1 -0.3633 -1.0235 0.0926 30 1 -0.3633 0.5920 0.8401 31 1 -0.3634 0.4315 -0.9327 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5734 3.7384 -3.0819 35 1 -1.9763 3.9847 -1.8923 36 1 -0.9550 5.3220 -1.3119 37 1 -3.9739 6.9979 -2.5929 38 1 2.9181 3.9290 -1.0961 39 1 3.0908 3.1408 -2.7000 40 1 4.9568 2.6764 -0.7982 41 1 4.3603 1.3118 -1.7918 42 1 6.0435 -1.6343 1.6727 43 1 6.3004 -1.4339 3.4224 44 1 4.7110 -1.0686 2.7085 45 1 8.0479 1.4919 1.9254 46 1 8.2486 0.0618 2.9655 47 1 7.9916 -0.1393 1.2155 48 1 4.7892 1.2210 3.7056 49 1 6.3786 0.8561 4.4195 50 1 6.1773 2.2866 3.3799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811464602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:25 Heat of formation + Delta-G solvation = -132.038885 kcal Electronic energy + Delta-G solvation = -29208.714969 eV Core-core repulsion = 25235.564693 eV Total energy + Delta-G solvation = -3973.150275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04600 -39.82187 -37.95649 -36.43692 -34.44211 -34.21295 -33.18917 -32.47324 -31.56637 -28.25691 -27.64318 -27.57835 -27.21259 -24.91829 -22.92597 -22.47465 -22.02804 -20.66908 -19.51105 -19.27244 -18.11670 -17.22281 -16.68970 -16.36998 -15.87114 -15.31956 -15.17743 -14.92315 -14.71606 -14.48662 -14.26159 -13.98653 -13.91115 -13.51567 -12.99865 -12.89068 -12.77836 -12.70016 -12.32017 -12.27295 -12.11088 -12.09371 -12.02343 -11.85476 -11.59591 -11.55215 -11.50045 -11.42232 -11.15830 -10.99555 -10.93861 -10.78284 -10.56559 -10.43110 -10.34053 -10.03233 -9.41368 -9.09350 -8.78078 -8.73632 -7.93461 -6.19698 -4.26752 1.96840 2.79918 3.21227 3.25517 3.28542 3.31172 3.72064 3.96341 4.31984 4.37808 4.49291 4.50548 4.53393 4.67881 4.91620 4.99752 5.15162 5.16780 5.21689 5.28687 5.30191 5.31504 5.41067 5.44700 5.48431 5.53826 5.55137 5.56317 5.64226 5.73544 5.76292 5.89932 5.95263 6.07840 6.10113 6.11533 6.19061 6.22086 6.37132 6.38431 6.60835 7.26449 7.37686 7.43810 7.48061 7.62419 7.93560 8.29590 8.56487 8.73655 9.03090 9.39977 10.90439 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.002488 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.566825 B =11253.125009 C =11707.125429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.102 0.898 5 C -0.121 4.121 6 H 0.109 0.891 7 C 0.509 3.491 8 O -0.545 6.545 9 N -0.708 5.708 10 C 0.250 3.750 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.884 5.884 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.124 4.124 20 C 0.106 3.894 21 N -0.601 5.601 22 C 0.669 3.331 23 O -0.563 6.563 24 O -0.364 6.364 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.140 4.140 28 C -0.184 4.184 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.969 -13.168 4.479 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.068 3.932 4 H 0.120 0.880 5 C -0.143 4.143 6 H 0.127 0.873 7 C 0.293 3.707 8 O -0.424 6.424 9 N -0.356 5.356 10 C 0.129 3.871 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.163 4.163 20 C -0.017 4.017 21 N -0.342 5.342 22 C 0.424 3.576 23 O -0.452 6.452 24 O -0.279 6.279 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.197 4.197 28 C -0.241 4.241 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.223 0.777 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.088 0.912 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.265 -13.200 5.705 24.848 hybrid contribution 0.041 0.545 -1.292 1.402 sum 20.305 -12.655 4.413 24.330 Atomic orbital electron populations 1.21670 0.94100 1.01127 1.03193 1.21863 0.97131 0.95343 1.02411 1.21501 0.76532 0.97136 0.98032 0.87989 1.22437 0.94966 0.98520 0.98358 0.87287 1.19919 0.85179 0.80979 0.84639 1.90680 1.56666 1.66659 1.28391 1.46421 1.31204 1.43774 1.14207 1.19124 0.81604 0.88863 0.97478 1.21246 1.12525 1.26047 0.98314 0.91848 1.24955 0.95538 0.96531 0.97021 1.69981 1.15624 1.36202 1.30378 0.86370 0.78220 0.79492 0.82873 1.19634 1.20804 1.20803 1.22829 0.92250 0.98551 1.02643 1.22337 0.96856 0.95966 0.86559 1.47270 1.07195 1.61756 1.17959 1.17423 0.80646 0.77510 0.82039 1.90898 1.70079 1.52326 1.31895 1.86300 1.18546 1.78585 1.44439 1.22047 0.91483 0.93665 0.82916 1.22515 1.05009 0.94370 1.02114 1.21849 0.91600 1.03285 1.02935 1.22517 1.05224 0.99656 0.96713 0.93071 0.91470 0.92686 0.92294 0.90718 0.77696 0.95462 0.95499 0.92474 0.89651 0.88644 0.90020 0.90999 0.92293 0.91267 0.89256 0.91506 0.90224 0.91546 0.89250 0.91244 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.77 37.16 0.33 -1.72 16 2 C -0.13 -1.74 5.42 -26.73 -0.14 -1.89 16 3 C 0.17 2.45 2.31 -66.94 -0.15 2.30 16 4 H 0.10 1.83 6.87 -51.93 -0.36 1.47 16 5 C -0.12 -1.61 2.31 -89.93 -0.21 -1.82 16 6 H 0.11 1.24 7.76 -51.93 -0.40 0.83 16 7 C 0.51 9.41 6.38 -10.99 -0.07 9.34 16 8 O -0.55 -12.27 14.43 5.56 0.08 -12.19 16 9 N -0.71 -13.91 5.49 -61.47 -0.34 -14.25 16 10 C 0.25 6.38 5.43 -5.19 -0.03 6.35 16 11 C -0.54 -14.27 9.28 -34.44 -0.32 -14.59 16 12 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -25.66 13.29 55.43 0.74 -24.93 16 15 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.12 -1.33 6.48 -24.58 -0.16 -1.49 16 20 C 0.11 1.06 6.90 -2.53 -0.02 1.05 16 21 N -0.60 -7.92 3.06 -168.74 -0.52 -8.44 16 22 C 0.67 9.47 7.64 54.05 0.41 9.89 16 23 O -0.56 -9.09 11.05 -19.28 -0.21 -9.30 16 24 O -0.36 -4.45 9.47 -40.32 -0.38 -4.83 16 25 C 0.14 1.35 1.13 -90.62 -0.10 1.25 16 26 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 27 C -0.14 -0.97 8.85 37.16 0.33 -0.65 16 28 C -0.18 -1.85 8.37 37.15 0.31 -1.54 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 31 H 0.05 0.83 7.12 -51.93 -0.37 0.46 16 32 H 0.06 0.70 8.01 -51.93 -0.42 0.28 16 33 H 0.07 1.09 6.87 -51.93 -0.36 0.73 16 34 H 0.39 6.48 8.32 -40.82 -0.34 6.14 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 1.04 8.04 -51.92 -0.42 0.62 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.09 5.87 -51.93 -0.30 0.78 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 1.15 5.89 -51.93 -0.31 0.84 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -32.15 395.11 -8.02 -40.17 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.71 Total: 5.74 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.39 Total: 6.65 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.12 Total: -47.62 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.51 Total: -26.32 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.15 -8.02 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811464602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.874 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds