Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46556 * 2 1 4 4 H 1.08997 * 110.00101 * 53.16385 * 3 2 1 5 5 C 1.54333 * 109.99294 * 292.12308 * 3 2 1 6 6 H 1.08997 * 110.66753 * 337.04655 * 5 3 2 7 7 C 1.50698 * 110.84950 * 100.20423 * 5 3 2 8 8 O 1.21280 * 120.00298 * 355.14300 * 7 5 3 9 9 N 1.34774 * 119.99997 * 175.14495 * 7 5 3 10 10 C 1.46501 * 120.00110 * 179.97438 * 9 7 5 11 11 C 1.50701 * 109.47021 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99714 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00010 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99928 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47139 * 120.00227 * 15 13 11 18 18 H 1.48498 * 109.47486 * 240.00491 * 15 13 11 19 19 C 1.55157 * 103.01829 * 218.67054 * 5 3 2 20 20 C 1.54912 * 101.58614 * 35.30642 * 19 5 3 21 21 N 1.47030 * 109.87649 * 174.25731 * 3 2 1 22 22 C 1.34776 * 125.64695 * 298.39425 * 21 3 2 23 23 O 1.21508 * 119.99873 * 354.85282 * 22 21 3 24 24 O 1.34637 * 119.99498 * 174.57969 * 22 21 3 25 25 C 1.45207 * 116.99483 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.46862 * 60.00476 * 25 24 22 27 27 C 1.53005 * 109.46807 * 179.97438 * 25 24 22 28 28 C 1.52993 * 109.47366 * 299.99934 * 25 24 22 29 29 H 1.09000 * 109.46896 * 185.17028 * 1 2 3 30 30 H 1.09005 * 109.46848 * 305.17094 * 1 2 3 31 31 H 1.08997 * 109.47390 * 65.17347 * 1 2 3 32 32 H 1.08995 * 109.46813 * 240.00765 * 2 1 3 33 33 H 1.09000 * 109.47128 * 119.99825 * 2 1 3 34 34 H 0.97006 * 120.00129 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.46886 * 299.99905 * 10 9 7 36 36 H 1.08997 * 109.47049 * 59.99890 * 10 9 7 37 37 H 0.97006 * 120.00062 * 179.97438 * 14 13 11 38 38 H 1.09008 * 111.00435 * 277.23379 * 19 5 3 39 39 H 1.09000 * 111.03711 * 153.39670 * 19 5 3 40 40 H 1.08997 * 110.36727 * 204.15605 * 20 19 5 41 41 H 1.09003 * 110.36171 * 81.82836 * 20 19 5 42 42 H 1.09001 * 109.47696 * 59.99790 * 26 25 24 43 43 H 1.08999 * 109.46738 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46929 * 299.99655 * 26 25 24 45 45 H 1.08998 * 109.46728 * 60.00241 * 27 25 24 46 46 H 1.08999 * 109.47017 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.47430 * 300.00693 * 27 25 24 48 48 H 1.09005 * 109.47179 * 60.00525 * 28 25 24 49 49 H 1.08999 * 109.47280 * 180.02562 * 28 25 24 50 50 H 1.08998 * 109.47344 * 300.00479 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5852 1.9987 0.8197 5 6 1.7008 2.1221 -1.3435 6 1 1.5555 1.3770 -2.1257 7 6 0.4807 2.9965 -1.2095 8 8 -0.1386 3.0176 -0.1670 9 7 0.0778 3.7550 -2.2481 10 6 -1.1085 4.6046 -2.1180 11 6 -1.3418 5.3430 -3.4108 12 1 -0.6730 5.1947 -4.2457 13 6 -2.4091 6.2081 -3.5277 14 7 -3.2232 6.3891 -2.5108 15 14 -2.6979 7.1239 -5.1299 16 1 -1.6483 6.7482 -6.1109 17 1 -4.0329 6.7644 -5.6719 18 1 -2.6423 8.5868 -4.8809 19 6 2.9619 2.9795 -1.6297 20 6 4.0867 2.0765 -1.0648 21 7 3.5036 1.4554 0.1384 22 6 4.1976 0.9739 1.1886 23 8 3.6087 0.5616 2.1682 24 8 5.5431 0.9448 1.1500 25 6 6.2246 0.4135 2.3169 26 6 5.7885 -1.0349 2.5467 27 6 7.7369 0.4602 2.0894 28 6 5.8667 1.2547 3.5436 29 1 -0.3633 -1.0235 0.0926 30 1 -0.3633 0.5920 0.8401 31 1 -0.3634 0.4315 -0.9327 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5734 3.7384 -3.0819 35 1 -1.9763 3.9847 -1.8923 36 1 -0.9550 5.3220 -1.3119 37 1 -3.9739 6.9979 -2.5929 38 1 2.9181 3.9290 -1.0961 39 1 3.0908 3.1408 -2.7000 40 1 4.9568 2.6764 -0.7982 41 1 4.3603 1.3118 -1.7918 42 1 6.0435 -1.6343 1.6727 43 1 6.3004 -1.4339 3.4224 44 1 4.7110 -1.0686 2.7085 45 1 8.0479 1.4919 1.9254 46 1 8.2486 0.0618 2.9655 47 1 7.9916 -0.1393 1.2155 48 1 4.7892 1.2210 3.7056 49 1 6.3786 0.8561 4.4195 50 1 6.1773 2.2866 3.3799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811464602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -153.599039 kcal Electronic energy + Delta-G solvation = -29209.649887 eV Core-core repulsion = 25235.564693 eV Total energy + Delta-G solvation = -3974.085194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.09647 -41.06485 -39.24769 -37.50791 -36.16693 -35.23453 -34.48995 -34.13731 -32.75366 -29.62964 -28.84030 -28.35880 -28.26479 -26.24019 -24.49387 -23.74320 -23.04309 -21.90741 -20.91298 -20.28510 -19.36583 -18.57874 -17.94806 -17.42275 -17.22886 -17.02860 -16.36063 -16.24465 -16.01549 -15.75262 -15.37808 -15.26190 -14.85183 -14.48334 -14.41172 -14.24913 -13.98582 -13.80713 -13.57427 -13.34275 -13.28215 -13.04611 -12.92021 -12.89664 -12.84699 -12.77026 -12.72724 -12.56720 -12.47994 -12.27946 -12.19613 -12.15099 -11.85637 -11.62422 -11.42582 -11.36556 -11.05727 -10.80097 -10.68643 -9.83554 -9.76487 -8.27447 -6.43486 0.98415 1.45085 1.45689 1.59119 1.73029 1.75441 2.32233 2.55100 2.86550 3.08082 3.32563 3.46005 3.75676 3.77356 3.81878 3.96277 4.00928 4.15489 4.18343 4.29034 4.32538 4.51228 4.52655 4.62387 4.65866 4.72607 4.73154 4.77539 4.85167 4.89822 4.93373 4.94345 5.02709 5.09651 5.11711 5.15944 5.17024 5.24042 5.27148 5.29314 5.35782 5.39847 5.47350 5.51714 5.71733 5.87047 6.41679 6.68235 6.91955 7.25372 7.26059 7.50959 8.84870 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.002488 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.566825 B =11253.125009 C =11707.125429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.172 3.828 4 H 0.055 0.945 5 C -0.106 4.106 6 H 0.145 0.855 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.700 5.700 10 C 0.267 3.733 11 C -0.550 4.550 12 H 0.087 0.913 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.983 3.017 16 H -0.250 1.250 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.118 4.118 20 C 0.107 3.893 21 N -0.604 5.604 22 C 0.663 3.337 23 O -0.592 6.592 24 O -0.361 6.361 25 C 0.124 3.876 26 C -0.178 4.178 27 C -0.133 4.133 28 C -0.181 4.181 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.410 0.590 35 H -0.013 1.013 36 H -0.015 1.015 37 H 0.267 0.733 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.218 -14.061 1.482 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.069 3.931 4 H 0.073 0.927 5 C -0.128 4.128 6 H 0.163 0.837 7 C 0.294 3.706 8 O -0.473 6.473 9 N -0.350 5.350 10 C 0.145 3.855 11 C -0.588 4.588 12 H 0.105 0.895 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.173 1.173 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.156 4.156 20 C -0.015 4.015 21 N -0.345 5.345 22 C 0.419 3.581 23 O -0.483 6.483 24 O -0.276 6.276 25 C 0.088 3.912 26 C -0.235 4.235 27 C -0.190 4.190 28 C -0.238 4.238 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.005 0.995 36 H 0.003 0.997 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.111 0.889 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.585 -14.111 2.672 27.614 hybrid contribution -0.956 0.794 -0.210 1.260 sum 22.630 -13.316 2.462 26.372 Atomic orbital electron populations 1.21605 0.95010 1.01615 1.01315 1.21777 0.96117 0.94796 1.03068 1.21269 0.77553 0.97230 0.97068 0.92684 1.22362 0.93212 0.98529 0.98672 0.83708 1.20823 0.86033 0.80467 0.83260 1.90674 1.58472 1.67923 1.30253 1.46085 1.29894 1.43355 1.15661 1.18526 0.82506 0.88090 0.96422 1.21653 1.12820 1.25634 0.98721 0.89467 1.26067 0.95206 0.97572 1.00932 1.70151 1.16486 1.37307 1.33197 0.85133 0.78481 0.77572 0.78164 1.17274 1.20717 1.20734 1.22914 0.90574 0.97199 1.04892 1.22583 0.96556 0.96619 0.85706 1.47303 1.06598 1.61718 1.18833 1.17613 0.81313 0.77357 0.81835 1.90895 1.70808 1.53478 1.33074 1.86310 1.17167 1.78567 1.45524 1.22442 0.93137 0.93521 0.82144 1.22460 1.03170 0.94513 1.03405 1.21866 0.88902 1.03837 1.04355 1.22479 1.03191 1.00075 0.98098 0.91051 0.94743 0.93409 0.89335 0.92141 0.75364 0.99499 0.99704 0.92387 0.91645 0.84755 0.88886 0.87849 0.91618 0.89108 0.92344 0.91267 0.87972 0.90823 0.92621 0.88936 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.77 71.98 0.63 -3.41 16 2 C -0.12 -3.19 5.42 30.60 0.17 -3.02 16 3 C 0.17 5.00 2.31 45.34 0.10 5.11 16 4 H 0.06 2.14 6.87 -2.39 -0.02 2.12 16 5 C -0.11 -2.67 2.31 -10.35 -0.02 -2.70 16 6 H 0.15 2.72 7.76 -2.39 -0.02 2.70 16 7 C 0.51 19.17 6.38 87.66 0.56 19.73 16 8 O -0.59 -28.54 14.43 -3.03 -0.04 -28.58 16 9 N -0.70 -27.63 5.49 -466.79 -2.56 -30.19 16 10 C 0.27 14.25 5.43 85.63 0.46 14.71 16 11 C -0.55 -28.94 9.28 25.60 0.24 -28.70 16 12 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 13 C 0.00 0.09 5.46 84.66 0.46 0.55 16 14 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 15 Si 0.98 41.47 29.54 68.60 2.03 43.49 16 16 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 19 C -0.12 -2.19 6.48 31.99 0.21 -1.98 16 20 C 0.11 1.80 6.90 86.86 0.60 2.40 16 21 N -0.60 -15.37 3.06 -918.19 -2.81 -18.19 16 22 C 0.66 18.76 7.64 129.79 0.99 19.75 16 23 O -0.59 -20.04 11.05 19.81 0.22 -19.82 16 24 O -0.36 -8.37 9.47 -55.46 -0.52 -8.90 16 25 C 0.12 2.28 1.13 -10.80 -0.01 2.27 16 26 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 27 C -0.13 -1.46 8.85 71.98 0.64 -0.83 16 28 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.21 7.90 -2.38 -0.02 1.19 16 31 H 0.05 1.45 7.12 -2.39 -0.02 1.43 16 32 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 33 H 0.06 1.81 6.87 -2.39 -0.02 1.79 16 34 H 0.41 12.79 8.32 -92.70 -0.77 12.02 16 35 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 36 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 38 H 0.06 1.51 8.04 -2.38 -0.02 1.49 16 39 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.45 5.87 -2.38 -0.01 1.44 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.05 1.50 5.89 -2.38 -0.01 1.49 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.78 395.11 2.97 -73.82 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.15 Total: 25.66 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.23 Total: 18.29 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.09 Total: -103.95 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.35 Total: -57.30 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -76.78 2.97 -73.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811464602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.782 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds