Wall clock time and date at job start Tue Mar 31 2020 16:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 5 5 C 1.46845 * 111.00294 * 304.21520 * 4 2 1 6 6 C 1.53034 * 109.52165 * 174.15949 * 5 4 2 7 7 C 1.53125 * 109.28184 * 59.17999 * 6 5 4 8 8 N 1.46504 * 109.57436 * 182.41057 * 7 6 5 9 9 C 1.34782 * 119.99420 * 274.70965 * 8 7 6 10 10 O 1.21281 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99450 * 180.02562 * 9 8 7 12 12 O 1.45203 * 109.46969 * 180.02562 * 11 9 8 13 13 C 1.34222 * 117.00110 * 180.02562 * 12 11 9 14 14 O 1.20823 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00335 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47690 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47781 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99247 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00473 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47145 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47315 * 120.00229 * 21 19 17 24 24 H 1.48498 * 109.47089 * 240.00364 * 21 19 17 25 25 C 1.53115 * 109.15606 * 302.34070 * 7 6 5 26 26 C 1.46850 * 111.00118 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.45957 * 294.17193 * 5 4 2 35 35 H 1.08990 * 109.46368 * 54.13809 * 5 4 2 36 36 H 1.09001 * 109.50518 * 299.23102 * 6 5 4 37 37 H 1.09007 * 109.50215 * 179.11818 * 6 5 4 38 38 H 1.08995 * 109.52228 * 62.24507 * 7 6 5 39 39 H 0.96989 * 120.00299 * 94.70999 * 8 7 6 40 40 H 1.09004 * 109.47399 * 299.99585 * 11 9 8 41 41 H 1.08998 * 109.47077 * 60.00114 * 11 9 8 42 42 H 1.09009 * 109.46569 * 299.99981 * 15 13 12 43 43 H 1.09005 * 109.47029 * 59.99105 * 15 13 12 44 44 H 1.09006 * 109.47350 * 300.00265 * 16 15 13 45 45 H 1.09002 * 109.47031 * 59.99282 * 16 15 13 46 46 H 0.97002 * 120.00006 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.50786 * 297.71965 * 25 7 6 48 48 H 1.09002 * 109.53400 * 177.61166 * 25 7 6 49 49 H 1.09000 * 109.46345 * 305.86530 * 26 4 2 50 50 H 1.09006 * 109.45763 * 65.83858 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.4683 -2.0509 -1.2848 6 6 1.8810 -2.6877 -2.6137 7 6 3.4092 -2.7307 -2.7008 8 7 3.8116 -3.2865 -3.9952 9 6 3.9006 -4.6217 -4.1568 10 8 3.6471 -5.3628 -3.2308 11 6 4.3151 -5.1935 -5.4880 12 8 4.3347 -6.6431 -5.4071 13 6 4.6866 -7.3107 -6.5171 14 8 4.9685 -6.7039 -7.5232 15 6 4.7290 -8.8171 -6.5090 16 6 5.1560 -9.3229 -7.8883 17 6 5.1990 -10.8292 -7.8800 18 1 4.9465 -11.3715 -6.9808 19 6 5.5596 -11.5150 -9.0204 20 7 5.8665 -10.8545 -10.1155 21 14 5.6122 -13.3822 -9.0102 22 1 5.2266 -13.8809 -7.6656 23 1 4.6648 -13.9097 -10.0247 24 1 6.9876 -13.8404 -9.3318 25 6 3.9606 -1.3091 -2.5608 26 6 3.4876 -0.7116 -1.2337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8521 -2.6511 -0.4598 35 1 0.3809 -2.0059 -1.2258 36 1 1.4859 -2.0957 -3.4392 37 1 1.4847 -3.7016 -2.6700 38 1 3.8024 -3.3546 -1.8982 39 1 4.0140 -2.6938 -4.7358 40 1 3.6049 -4.8823 -6.2542 41 1 5.3100 -4.8301 -5.7456 42 1 5.4444 -9.1563 -5.7597 43 1 3.7397 -9.2071 -6.2695 44 1 4.4404 -8.9836 -8.6373 45 1 6.1452 -8.9328 -8.1281 46 1 6.1206 -11.3369 -10.9177 47 1 3.5981 -0.6953 -3.3854 48 1 5.0501 -1.3373 -2.5795 49 1 3.8664 0.3059 -1.1375 50 1 3.8622 -1.3180 -0.4090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:06 Heat of formation + Delta-G solvation = -135.102115 kcal Electronic energy + Delta-G solvation = -27239.847755 eV Core-core repulsion = 23266.564648 eV Total energy + Delta-G solvation = -3973.283107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.58805 -39.96470 -39.04233 -36.37683 -35.85072 -33.59995 -33.55593 -31.56360 -31.24031 -30.50322 -28.44802 -27.71081 -25.86788 -24.18598 -23.30247 -22.21919 -20.92570 -20.78868 -20.22550 -19.85999 -17.61272 -17.51983 -16.80104 -16.59703 -16.43934 -15.97898 -15.40662 -15.24454 -15.07084 -14.98993 -14.47354 -14.41377 -14.11598 -13.85555 -13.63217 -13.33653 -13.29579 -12.68123 -12.46339 -12.38281 -12.29204 -12.24544 -12.16514 -11.80093 -11.69995 -11.61740 -11.46202 -11.21036 -11.03229 -10.97124 -10.75094 -10.62182 -10.55380 -10.06017 -10.04928 -9.93028 -9.56608 -9.35808 -9.16041 -8.76984 -8.37653 -6.01412 -4.05956 2.37468 2.39307 2.76366 3.31721 3.33771 3.38573 3.41681 3.46375 4.20365 4.32551 4.43898 4.45721 4.52270 4.55423 4.66419 4.79242 4.84525 4.94001 5.02893 5.03228 5.04656 5.14821 5.17357 5.20074 5.30800 5.32227 5.34363 5.41993 5.45351 5.47876 5.49976 5.63202 5.69850 5.76190 5.78420 5.91158 6.13497 6.16012 6.21282 6.56825 6.64558 6.65068 6.87550 7.16811 7.66836 7.72895 7.96783 7.98010 8.21724 8.38162 9.01252 9.58244 11.09667 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.001592 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.466072 B =17582.906240 C =17896.327298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.535 5.535 5 C 0.054 3.946 6 C -0.127 4.127 7 C 0.147 3.853 8 N -0.727 5.727 9 C 0.518 3.482 10 O -0.514 6.514 11 C 0.045 3.955 12 O -0.342 6.342 13 C 0.459 3.541 14 O -0.506 6.506 15 C -0.102 4.102 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.123 4.123 26 C 0.056 3.944 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.402 0.598 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 27.125 20.340 34.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.204 4.204 4 N -0.261 5.261 5 C -0.074 4.074 6 C -0.166 4.166 7 C 0.042 3.958 8 N -0.381 5.381 9 C 0.303 3.697 10 O -0.388 6.388 11 C -0.033 4.033 12 O -0.259 6.259 13 C 0.302 3.698 14 O -0.392 6.392 15 C -0.139 4.139 16 C -0.005 4.005 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.723 3.277 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.161 4.161 26 C -0.073 4.073 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.237 0.763 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.183 26.999 20.130 34.657 hybrid contribution 0.481 -0.973 0.090 1.089 sum -7.702 26.026 20.219 33.845 Atomic orbital electron populations 1.21935 0.94203 1.02179 1.02340 1.21597 0.95798 0.95050 0.90784 1.21899 1.01015 0.95198 1.02306 1.62023 1.07700 1.17247 1.39121 1.22128 1.00539 0.87961 0.96770 1.21997 0.95362 1.01358 0.97913 1.21011 0.94684 0.94289 0.85791 1.45899 1.71051 1.06379 1.14735 1.20245 0.77411 0.82376 0.89661 1.90748 1.47475 1.58588 1.42022 1.22526 1.03945 0.81234 0.95603 1.86664 1.80646 1.18161 1.40424 1.24945 0.72090 0.92846 0.79884 1.90636 1.44786 1.70209 1.33594 1.21795 1.04331 0.82945 1.04854 1.19041 0.97874 0.95522 0.88030 1.21200 1.46733 0.91137 0.97514 0.92182 1.25015 0.95173 0.98633 0.95489 1.70000 1.45782 1.35434 1.01618 0.86482 0.77644 0.85432 0.78112 1.19618 1.20972 1.20980 1.21865 1.00698 0.94833 0.98746 1.22081 0.87710 1.01165 0.96305 0.91631 0.92179 0.92347 0.94262 0.92225 0.92525 0.91649 0.94646 0.89786 0.90702 0.90696 0.89569 0.76332 0.88392 0.88419 0.88722 0.88715 0.95525 0.95535 0.92918 0.90274 0.90657 0.89733 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 8.84 37.16 0.33 -0.44 16 2 C 0.08 0.43 2.68 -67.72 -0.18 0.25 16 3 C -0.15 -0.69 8.97 37.15 0.33 -0.35 16 4 N -0.53 -3.51 4.52 -226.70 -1.03 -4.54 16 5 C 0.05 0.39 5.13 -3.84 -0.02 0.37 16 6 C -0.13 -1.04 5.68 -26.65 -0.15 -1.19 16 7 C 0.15 1.19 2.52 -67.80 -0.17 1.02 16 8 N -0.73 -6.17 5.08 -53.68 -0.27 -6.44 16 9 C 0.52 6.52 7.88 -10.98 -0.09 6.44 16 10 O -0.51 -8.65 16.16 -14.10 -0.23 -8.88 16 11 C 0.04 0.59 5.94 36.01 0.21 0.80 16 12 O -0.34 -6.01 9.75 -45.88 -0.45 -6.46 16 13 C 0.46 9.12 7.96 36.01 0.29 9.41 16 14 O -0.51 -11.20 15.73 -18.75 -0.29 -11.49 16 15 C -0.10 -2.13 5.75 -27.89 -0.16 -2.29 16 16 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 17 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.12 -0.72 5.57 -26.65 -0.15 -0.86 16 26 C 0.06 0.33 5.22 -3.83 -0.02 0.31 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 6.22 -51.93 -0.32 -0.02 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.25 6.28 -51.93 -0.33 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.56 5.90 -51.93 -0.31 0.26 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 39 H 0.40 2.26 8.60 -40.82 -0.35 1.91 16 40 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 41 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 42 H 0.09 1.84 8.14 -51.92 -0.42 1.41 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 45 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.42 6.01 -51.93 -0.31 0.11 16 50 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -34.67 401.32 -9.55 -44.22 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.74 Total: -3.37 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.31 Total: 0.64 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.56 Total: -37.26 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.97 Total: -26.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.67 -9.55 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.880 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds