Wall clock time and date at job start Tue Mar 31 2020 16:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 5 5 C 1.46845 * 111.00294 * 304.21520 * 4 2 1 6 6 C 1.53034 * 109.52165 * 174.15949 * 5 4 2 7 7 C 1.53125 * 109.28184 * 59.17999 * 6 5 4 8 8 N 1.46504 * 109.57436 * 182.41057 * 7 6 5 9 9 C 1.34782 * 119.99420 * 274.70965 * 8 7 6 10 10 O 1.21281 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99450 * 180.02562 * 9 8 7 12 12 O 1.45203 * 109.46969 * 180.02562 * 11 9 8 13 13 C 1.34222 * 117.00110 * 180.02562 * 12 11 9 14 14 O 1.20823 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00335 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47690 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47781 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99247 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00473 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47145 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47315 * 120.00229 * 21 19 17 24 24 H 1.48498 * 109.47089 * 240.00364 * 21 19 17 25 25 C 1.53115 * 109.15606 * 302.34070 * 7 6 5 26 26 C 1.46850 * 111.00118 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.45957 * 294.17193 * 5 4 2 35 35 H 1.08990 * 109.46368 * 54.13809 * 5 4 2 36 36 H 1.09001 * 109.50518 * 299.23102 * 6 5 4 37 37 H 1.09007 * 109.50215 * 179.11818 * 6 5 4 38 38 H 1.08995 * 109.52228 * 62.24507 * 7 6 5 39 39 H 0.96989 * 120.00299 * 94.70999 * 8 7 6 40 40 H 1.09004 * 109.47399 * 299.99585 * 11 9 8 41 41 H 1.08998 * 109.47077 * 60.00114 * 11 9 8 42 42 H 1.09009 * 109.46569 * 299.99981 * 15 13 12 43 43 H 1.09005 * 109.47029 * 59.99105 * 15 13 12 44 44 H 1.09006 * 109.47350 * 300.00265 * 16 15 13 45 45 H 1.09002 * 109.47031 * 59.99282 * 16 15 13 46 46 H 0.97002 * 120.00006 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.50786 * 297.71965 * 25 7 6 48 48 H 1.09002 * 109.53400 * 177.61166 * 25 7 6 49 49 H 1.09000 * 109.46345 * 305.86530 * 26 4 2 50 50 H 1.09006 * 109.45763 * 65.83858 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.4683 -2.0509 -1.2848 6 6 1.8810 -2.6877 -2.6137 7 6 3.4092 -2.7307 -2.7008 8 7 3.8116 -3.2865 -3.9952 9 6 3.9006 -4.6217 -4.1568 10 8 3.6471 -5.3628 -3.2308 11 6 4.3151 -5.1935 -5.4880 12 8 4.3347 -6.6431 -5.4071 13 6 4.6866 -7.3107 -6.5171 14 8 4.9685 -6.7039 -7.5232 15 6 4.7290 -8.8171 -6.5090 16 6 5.1560 -9.3229 -7.8883 17 6 5.1990 -10.8292 -7.8800 18 1 4.9465 -11.3715 -6.9808 19 6 5.5596 -11.5150 -9.0204 20 7 5.8665 -10.8545 -10.1155 21 14 5.6122 -13.3822 -9.0102 22 1 5.2266 -13.8809 -7.6656 23 1 4.6648 -13.9097 -10.0247 24 1 6.9876 -13.8404 -9.3318 25 6 3.9606 -1.3091 -2.5608 26 6 3.4876 -0.7116 -1.2337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8521 -2.6511 -0.4598 35 1 0.3809 -2.0059 -1.2258 36 1 1.4859 -2.0957 -3.4392 37 1 1.4847 -3.7016 -2.6700 38 1 3.8024 -3.3546 -1.8982 39 1 4.0140 -2.6938 -4.7358 40 1 3.6049 -4.8823 -6.2542 41 1 5.3100 -4.8301 -5.7456 42 1 5.4444 -9.1563 -5.7597 43 1 3.7397 -9.2071 -6.2695 44 1 4.4404 -8.9836 -8.6373 45 1 6.1452 -8.9328 -8.1281 46 1 6.1206 -11.3369 -10.9177 47 1 3.5981 -0.6953 -3.3854 48 1 5.0501 -1.3373 -2.5795 49 1 3.8664 0.3059 -1.1375 50 1 3.8622 -1.3180 -0.4090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:04 Heat of formation + Delta-G solvation = -157.647737 kcal Electronic energy + Delta-G solvation = -27240.825406 eV Core-core repulsion = 23266.564648 eV Total energy + Delta-G solvation = -3974.260759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.76606 -41.03972 -39.89891 -37.64649 -36.80484 -35.65139 -34.29124 -33.18702 -32.11362 -31.29504 -29.52138 -28.11820 -27.75599 -24.97368 -24.01330 -23.86378 -21.74942 -21.55622 -21.42393 -20.81514 -19.17617 -18.49528 -18.20037 -17.91703 -17.59646 -17.10129 -16.49400 -16.42770 -16.24342 -15.92110 -15.55445 -15.18272 -15.07015 -14.81653 -14.55262 -14.35541 -14.27097 -13.87845 -13.79585 -13.76161 -13.17069 -13.09016 -12.89803 -12.85892 -12.70417 -12.49115 -12.37630 -12.20472 -12.17921 -12.02700 -11.94834 -11.87462 -11.76526 -11.62194 -11.52696 -11.30561 -11.28030 -10.97980 -10.57878 -10.18034 -9.30014 -8.19931 -6.33101 1.17206 1.23063 1.38776 1.44459 1.44488 1.58431 2.28762 2.45147 2.85307 3.14122 3.49996 3.69599 3.75717 3.90052 4.00927 4.02355 4.05924 4.07977 4.11468 4.24073 4.38133 4.41690 4.43901 4.44817 4.46422 4.57594 4.61587 4.78027 4.85909 4.87267 4.88432 4.91851 4.99506 5.01002 5.11336 5.15206 5.18677 5.24065 5.34013 5.41782 5.42675 5.47594 5.55909 5.80975 6.11624 6.13878 6.16027 6.36633 6.73270 6.85210 7.06732 7.36960 8.92768 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.001592 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.466072 B =17582.906240 C =17896.327298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.537 5.537 5 C 0.058 3.942 6 C -0.122 4.122 7 C 0.146 3.854 8 N -0.704 5.704 9 C 0.522 3.478 10 O -0.562 6.562 11 C 0.037 3.963 12 O -0.347 6.347 13 C 0.470 3.530 14 O -0.534 6.534 15 C -0.096 4.096 16 C 0.039 3.961 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.114 4.114 26 C 0.054 3.946 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.420 0.580 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.113 0.887 44 H -0.006 1.006 45 H -0.006 1.006 46 H 0.264 0.736 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 27.962 21.426 36.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.200 4.200 4 N -0.263 5.263 5 C -0.070 4.070 6 C -0.161 4.161 7 C 0.042 3.958 8 N -0.358 5.358 9 C 0.308 3.692 10 O -0.440 6.440 11 C -0.039 4.039 12 O -0.263 6.263 13 C 0.315 3.685 14 O -0.423 6.423 15 C -0.133 4.133 16 C 0.002 3.998 17 C -0.583 4.583 18 H 0.093 0.907 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.797 3.203 22 H -0.180 1.180 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.152 4.152 26 C -0.074 4.074 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.258 0.742 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.118 0.882 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.396 27.898 21.236 36.052 hybrid contribution 0.520 -1.093 -0.200 1.227 sum -7.876 26.804 21.035 34.971 Atomic orbital electron populations 1.21916 0.93845 1.01999 1.02668 1.21676 0.96158 0.95567 0.90156 1.21866 1.01219 0.94299 1.02596 1.62067 1.08105 1.16487 1.39641 1.22057 1.00855 0.88347 0.95775 1.21912 0.95199 1.00217 0.98741 1.21075 0.94771 0.95334 0.84642 1.45747 1.69259 1.05189 1.15606 1.20184 0.76944 0.83302 0.88767 1.90737 1.50032 1.59950 1.43307 1.22908 1.05850 0.78577 0.96600 1.86594 1.79920 1.20870 1.38895 1.24490 0.71556 0.92520 0.79906 1.90627 1.46256 1.70723 1.34722 1.21535 1.05711 0.84218 1.01815 1.18813 0.95289 0.95271 0.90476 1.21668 1.46370 0.92104 0.98156 0.90721 1.26046 0.94577 1.04313 0.95004 1.70150 1.46884 1.37804 1.02499 0.85284 0.77717 0.78541 0.78781 1.17991 1.20530 1.20535 1.21822 1.01289 0.92909 0.99146 1.22147 0.87350 1.01873 0.96040 0.91950 0.91186 0.92785 0.94805 0.91347 0.92150 0.91942 0.95741 0.89323 0.90024 0.92978 0.91854 0.74244 0.86493 0.86413 0.86843 0.86856 0.98747 0.98740 0.92719 0.89109 0.89533 0.88243 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 71.98 0.64 -0.71 16 2 C 0.07 0.73 2.68 44.91 0.12 0.86 16 3 C -0.14 -1.07 8.97 71.98 0.65 -0.43 16 4 N -0.54 -6.38 4.52 -871.14 -3.94 -10.32 16 5 C 0.06 0.82 5.13 86.32 0.44 1.26 16 6 C -0.12 -1.93 5.68 30.65 0.17 -1.76 16 7 C 0.15 2.25 2.52 45.07 0.11 2.37 16 8 N -0.70 -10.94 5.08 -442.14 -2.25 -13.19 16 9 C 0.52 12.74 7.88 87.66 0.69 13.43 16 10 O -0.56 -19.04 16.16 15.76 0.25 -18.79 16 11 C 0.04 0.93 5.94 71.24 0.42 1.36 16 12 O -0.35 -11.90 9.75 -44.99 -0.44 -12.34 16 13 C 0.47 18.58 7.96 71.24 0.57 19.14 16 14 O -0.53 -23.82 15.73 21.97 0.35 -23.47 16 15 C -0.10 -3.96 5.75 29.85 0.17 -3.79 16 16 C 0.04 2.10 4.26 29.84 0.13 2.23 16 17 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 18 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 19 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 20 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 21 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 C -0.11 -1.09 5.57 30.64 0.17 -0.92 16 26 C 0.05 0.55 5.22 86.32 0.45 1.00 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.53 6.22 -2.38 -0.01 0.52 16 30 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.41 6.28 -2.39 -0.02 0.39 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.02 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.09 1.16 5.90 -2.39 -0.01 1.14 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 39 H 0.42 3.68 8.60 -92.72 -0.80 2.89 16 40 H 0.12 2.50 8.13 -2.39 -0.02 2.48 16 41 H 0.12 2.49 8.13 -2.39 -0.02 2.47 16 42 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 43 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 44 H -0.01 -0.35 8.10 -2.38 -0.02 -0.37 16 45 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 0.75 6.01 -2.39 -0.01 0.74 16 50 H 0.03 0.34 8.14 -2.38 -0.02 0.32 16 Total: -1.00 -76.30 401.32 1.84 -74.46 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.12 Total: 11.11 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.43 Total: 3.94 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -5.90 Total: -80.98 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: 0.16 Total: -54.60 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.30 1.84 -74.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.185 kcal (2) G-P(sol) polarization free energy of solvation -76.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds