Wall clock time and date at job start Tue Mar 31 2020 16:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46983 * 2 1 4 4 H 1.09006 * 109.46930 * 55.00100 * 3 2 1 5 5 C 1.50705 * 109.47250 * 174.99724 * 3 2 1 6 6 O 1.21285 * 120.00092 * 120.00174 * 5 3 2 7 7 N 1.34779 * 119.99836 * 300.00364 * 5 3 2 8 8 C 1.37095 * 119.99813 * 180.02562 * 7 5 3 9 9 H 1.08000 * 120.00138 * 131.45005 * 8 7 5 10 10 C 1.38949 * 119.99979 * 311.44568 * 8 7 5 11 11 N 1.31412 * 120.00596 * 168.12049 * 10 8 7 12 12 Si 1.86807 * 120.00039 * 348.12133 * 10 8 7 13 13 H 1.48497 * 109.47270 * 94.79716 * 12 10 8 14 14 H 1.48500 * 109.47133 * 214.80243 * 12 10 8 15 15 H 1.48504 * 109.47080 * 334.80019 * 12 10 8 16 16 C 1.46494 * 120.00107 * 359.97438 * 7 5 3 17 17 C 1.52998 * 117.49826 * 189.21972 * 16 7 5 18 18 C 1.52997 * 117.50142 * 120.55929 * 16 7 5 19 19 N 1.46494 * 109.47493 * 294.99880 * 3 2 1 20 20 C 1.46508 * 120.00001 * 300.00173 * 19 3 2 21 21 C 1.34777 * 120.00098 * 119.99780 * 19 3 2 22 22 O 1.21508 * 120.00435 * 0.02562 * 21 19 3 23 23 O 1.34641 * 119.99694 * 180.02562 * 21 19 3 24 24 C 1.45205 * 116.99740 * 180.02562 * 23 21 19 25 25 C 1.52996 * 109.47582 * 59.99654 * 24 23 21 26 26 C 1.53002 * 109.47171 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.46931 * 300.00061 * 24 23 21 28 28 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47371 * 300.00043 * 1 2 3 30 30 H 1.09001 * 109.46981 * 59.99935 * 1 2 3 31 31 H 1.08997 * 109.47371 * 239.99957 * 2 1 3 32 32 H 1.09001 * 109.46981 * 120.00065 * 2 1 3 33 33 H 0.96993 * 120.00477 * 179.97438 * 11 10 8 34 34 H 1.09000 * 115.55359 * 334.89035 * 16 7 5 35 35 H 1.08997 * 117.50263 * 359.97438 * 17 16 7 36 36 H 1.09003 * 117.49818 * 145.01959 * 17 16 7 37 37 H 1.08999 * 117.50440 * 214.97950 * 18 16 7 38 38 H 1.09007 * 117.50047 * 359.97438 * 18 16 7 39 39 H 1.08993 * 109.46955 * 89.99664 * 20 19 3 40 40 H 1.09001 * 109.46715 * 209.99822 * 20 19 3 41 41 H 1.09000 * 109.46542 * 329.99636 * 20 19 3 42 42 H 1.09006 * 109.46891 * 59.99623 * 25 24 23 43 43 H 1.08999 * 109.47528 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47098 * 300.00672 * 25 24 23 45 45 H 1.08999 * 109.47015 * 59.99728 * 26 24 23 46 46 H 1.08999 * 109.47124 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.46550 * 299.99444 * 26 24 23 48 48 H 1.08997 * 109.47531 * 59.99595 * 27 24 23 49 49 H 1.09004 * 109.47277 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.46505 * 299.99873 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 8 4.2217 1.9437 -0.7477 7 7 4.1297 0.8912 1.2032 8 6 5.4960 0.8933 1.3162 9 1 5.9614 1.2171 2.2354 10 6 6.2821 0.4789 0.2480 11 7 7.5780 0.6965 0.2624 12 14 5.4968 -0.3878 -1.2086 13 1 5.1937 0.6048 -2.2707 14 1 6.4332 -1.4107 -1.7396 15 1 4.2390 -1.0466 -0.7734 16 6 3.3086 0.2885 2.2562 17 6 4.0122 -0.1274 3.5496 18 6 3.5298 -1.1939 2.5632 19 7 1.6525 2.0975 -1.2517 20 6 2.1140 1.5590 -2.5337 21 6 0.8714 3.1955 -1.2241 22 8 0.4889 3.6425 -0.1609 23 8 0.5148 3.7972 -2.3746 24 6 -0.3273 4.9753 -2.2689 25 6 0.3957 6.0474 -1.4512 26 6 -0.6261 5.5159 -3.6687 27 6 -1.6395 4.6037 -1.5754 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 8.1267 0.4068 -0.4831 34 1 2.2919 0.6730 2.3376 35 1 5.0860 0.0469 3.6169 36 1 3.4582 -0.0169 4.4818 37 1 2.6588 -1.7846 2.8469 38 1 4.2860 -1.7210 1.9814 39 1 1.3915 0.8314 -2.9033 40 1 2.2132 2.3709 -3.2542 41 1 3.0806 1.0742 -2.3972 42 1 1.3307 6.3122 -1.9452 43 1 -0.2366 6.9317 -1.3715 44 1 0.6083 5.6620 -0.4539 45 1 -1.1414 4.7520 -4.2509 46 1 -1.2586 6.4001 -3.5894 47 1 0.3087 5.7806 -4.1630 48 1 -1.4271 4.2183 -0.5783 49 1 -2.2719 5.4880 -1.4965 50 1 -2.1546 3.8399 -2.1581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823520842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:05 Heat of formation + Delta-G solvation = -65.159193 kcal Electronic energy + Delta-G solvation = -31064.534758 eV Core-core repulsion = 27094.284604 eV Total energy + Delta-G solvation = -3970.250154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80130 -39.59082 -37.50624 -36.42973 -35.45400 -34.10760 -32.96384 -32.55377 -31.37144 -28.00455 -27.46352 -27.37800 -26.41781 -24.66862 -22.64273 -22.01484 -21.81548 -20.59674 -19.65017 -18.93835 -17.80281 -17.09297 -16.59375 -16.39542 -15.90821 -15.65684 -14.93476 -14.69349 -14.39291 -14.15589 -13.97454 -13.78715 -13.50738 -13.32665 -13.25735 -12.97229 -12.64790 -12.55795 -12.18695 -12.10012 -12.03288 -11.90883 -11.88217 -11.73066 -11.47209 -11.42130 -11.27521 -11.10623 -11.07175 -10.90565 -10.65399 -10.30381 -10.21127 -10.12952 -10.01321 -9.79290 -9.65260 -9.05596 -8.69804 -8.09605 -7.48576 -6.23960 -4.09753 2.28397 3.05556 3.18751 3.34401 3.50871 3.66812 3.99769 4.28825 4.40143 4.57254 4.69525 4.73342 4.87939 4.98929 5.08454 5.20304 5.27238 5.38333 5.39544 5.45364 5.49202 5.53381 5.59866 5.61879 5.65088 5.66218 5.71388 5.75133 5.80362 5.84384 5.91430 5.92840 6.09351 6.15237 6.16920 6.21735 6.26519 6.27715 6.36052 6.37387 6.60060 6.63660 6.69824 6.85519 7.60458 7.78107 7.96916 8.54613 8.69774 8.82168 9.33978 9.70340 10.81092 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.004620 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.436543 B = 6059.221953 C = 6657.892640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.141 3.859 4 H 0.120 0.880 5 C 0.452 3.548 6 O -0.533 6.533 7 N -0.433 5.433 8 C -0.340 4.340 9 H 0.096 0.904 10 C 0.089 3.911 11 N -0.870 5.870 12 Si 0.907 3.093 13 H -0.257 1.257 14 H -0.308 1.308 15 H -0.273 1.273 16 C 0.058 3.942 17 C -0.173 4.173 18 C -0.197 4.197 19 N -0.567 5.567 20 C 0.082 3.918 21 C 0.657 3.343 22 O -0.574 6.574 23 O -0.361 6.361 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.181 4.181 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.272 0.728 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.692 1.597 -3.306 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C 0.035 3.965 4 H 0.138 0.862 5 C 0.240 3.760 6 O -0.414 6.414 7 N -0.154 5.154 8 C -0.466 4.466 9 H 0.114 0.886 10 C -0.119 4.119 11 N -0.505 5.505 12 Si 0.738 3.262 13 H -0.183 1.183 14 H -0.237 1.237 15 H -0.198 1.198 16 C -0.047 4.047 17 C -0.211 4.211 18 C -0.235 4.235 19 N -0.306 5.306 20 C -0.060 4.060 21 C 0.412 3.588 22 O -0.465 6.465 23 O -0.275 6.275 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.239 4.239 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.296 2.065 -3.556 17.778 hybrid contribution -0.167 -0.428 -0.730 0.863 sum -17.463 1.637 -4.286 18.056 Atomic orbital electron populations 1.21699 0.95113 1.01298 1.01957 1.22186 0.96566 0.94877 1.04692 1.21073 0.94423 0.94322 0.86687 0.86238 1.20553 0.88739 0.81294 0.85395 1.90532 1.64290 1.46719 1.39854 1.43076 1.05993 1.49285 1.17086 1.18749 0.77621 1.46748 1.03460 0.88616 1.25370 0.94650 0.93775 0.98154 1.69689 1.05325 1.43126 1.32313 0.86409 0.78407 0.77579 0.83852 1.18328 1.23747 1.19816 1.21944 0.95270 0.94752 0.92780 1.23168 1.02658 1.02930 0.92295 1.23293 1.03303 0.92522 1.04407 1.46186 1.49795 1.26606 1.07965 1.21846 1.00646 0.99620 0.83909 1.17857 0.78484 0.80146 0.82284 1.90841 1.59458 1.65791 1.30378 1.86310 1.65468 1.42607 1.33158 1.22018 0.89141 0.82321 0.96758 1.22512 1.00611 0.98053 1.02897 1.21841 1.02561 1.01033 0.94218 1.22506 0.95798 1.02188 1.03367 0.92598 0.92480 0.93100 0.91309 0.88352 0.91775 0.86914 0.87126 0.89423 0.89420 0.88348 0.93361 0.90748 0.89536 0.92118 0.91441 0.89219 0.91638 0.90361 0.91475 0.89250 0.91427 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.80 37.16 0.36 -1.47 16 2 C -0.14 -2.27 4.99 -26.73 -0.13 -2.41 16 3 C 0.14 2.64 1.66 -69.08 -0.11 2.53 16 4 H 0.12 2.22 6.33 -51.93 -0.33 1.89 16 5 C 0.45 10.54 4.91 -10.98 -0.05 10.48 16 6 O -0.53 -14.32 10.51 5.55 0.06 -14.26 16 7 N -0.43 -10.08 2.44 -107.74 -0.26 -10.35 16 8 C -0.34 -9.28 8.47 -14.93 -0.13 -9.40 16 9 H 0.10 2.77 7.15 -52.49 -0.38 2.39 16 10 C 0.09 2.55 5.03 -17.47 -0.09 2.47 16 11 N -0.87 -26.13 13.96 55.50 0.77 -25.36 16 12 Si 0.91 23.18 23.90 -169.99 -4.06 19.12 16 13 H -0.26 -6.81 5.89 56.52 0.33 -6.47 16 14 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 15 H -0.27 -6.48 7.06 56.52 0.40 -6.08 16 16 C 0.06 1.06 4.30 -67.94 -0.29 0.76 16 17 C -0.17 -2.89 9.84 -26.70 -0.26 -3.15 16 18 C -0.20 -3.21 9.40 -26.70 -0.25 -3.46 16 19 N -0.57 -10.39 1.99 -181.06 -0.36 -10.75 16 20 C 0.08 1.41 8.95 59.85 0.54 1.95 16 21 C 0.66 11.78 7.70 54.06 0.42 12.19 16 22 O -0.57 -10.82 11.21 -19.28 -0.22 -11.04 16 23 O -0.36 -5.72 8.71 -40.33 -0.35 -6.07 16 24 C 0.13 1.71 1.13 -90.62 -0.10 1.61 16 25 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 26 C -0.14 -1.33 8.85 37.16 0.33 -1.00 16 27 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.68 7.75 -51.93 -0.40 0.28 16 31 H 0.07 1.14 7.51 -51.93 -0.39 0.75 16 32 H 0.10 1.51 4.35 -51.93 -0.23 1.28 16 33 H 0.27 7.73 8.31 -40.82 -0.34 7.40 16 34 H 0.11 1.77 6.20 -51.93 -0.32 1.44 16 35 H 0.11 2.13 6.59 -51.93 -0.34 1.79 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.22 7.37 -51.93 -0.38 0.83 16 41 H 0.09 1.74 4.83 -51.93 -0.25 1.49 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -32.73 378.53 -6.20 -38.93 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.33 Total: 6.84 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 0.84 Total: 7.23 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.15 Total: -46.46 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.51 Total: -31.37 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.06 Total: 19.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.73 -6.20 -38.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823520842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds