Wall clock time and date at job start Tue Mar 31 2020 16:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46983 * 2 1 4 4 H 1.09006 * 109.46930 * 55.00100 * 3 2 1 5 5 C 1.50705 * 109.47250 * 174.99724 * 3 2 1 6 6 O 1.21285 * 120.00092 * 120.00174 * 5 3 2 7 7 N 1.34779 * 119.99836 * 300.00364 * 5 3 2 8 8 C 1.37095 * 119.99813 * 180.02562 * 7 5 3 9 9 H 1.08000 * 120.00138 * 131.45005 * 8 7 5 10 10 C 1.38949 * 119.99979 * 311.44568 * 8 7 5 11 11 N 1.31412 * 120.00596 * 168.12049 * 10 8 7 12 12 Si 1.86807 * 120.00039 * 348.12133 * 10 8 7 13 13 H 1.48497 * 109.47270 * 94.79716 * 12 10 8 14 14 H 1.48500 * 109.47133 * 214.80243 * 12 10 8 15 15 H 1.48504 * 109.47080 * 334.80019 * 12 10 8 16 16 C 1.46494 * 120.00107 * 359.97438 * 7 5 3 17 17 C 1.52998 * 117.49826 * 189.21972 * 16 7 5 18 18 C 1.52997 * 117.50142 * 120.55929 * 16 7 5 19 19 N 1.46494 * 109.47493 * 294.99880 * 3 2 1 20 20 C 1.46508 * 120.00001 * 300.00173 * 19 3 2 21 21 C 1.34777 * 120.00098 * 119.99780 * 19 3 2 22 22 O 1.21508 * 120.00435 * 0.02562 * 21 19 3 23 23 O 1.34641 * 119.99694 * 180.02562 * 21 19 3 24 24 C 1.45205 * 116.99740 * 180.02562 * 23 21 19 25 25 C 1.52996 * 109.47582 * 59.99654 * 24 23 21 26 26 C 1.53002 * 109.47171 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.46931 * 300.00061 * 24 23 21 28 28 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47371 * 300.00043 * 1 2 3 30 30 H 1.09001 * 109.46981 * 59.99935 * 1 2 3 31 31 H 1.08997 * 109.47371 * 239.99957 * 2 1 3 32 32 H 1.09001 * 109.46981 * 120.00065 * 2 1 3 33 33 H 0.96993 * 120.00477 * 179.97438 * 11 10 8 34 34 H 1.09000 * 115.55359 * 334.89035 * 16 7 5 35 35 H 1.08997 * 117.50263 * 359.97438 * 17 16 7 36 36 H 1.09003 * 117.49818 * 145.01959 * 17 16 7 37 37 H 1.08999 * 117.50440 * 214.97950 * 18 16 7 38 38 H 1.09007 * 117.50047 * 359.97438 * 18 16 7 39 39 H 1.08993 * 109.46955 * 89.99664 * 20 19 3 40 40 H 1.09001 * 109.46715 * 209.99822 * 20 19 3 41 41 H 1.09000 * 109.46542 * 329.99636 * 20 19 3 42 42 H 1.09006 * 109.46891 * 59.99623 * 25 24 23 43 43 H 1.08999 * 109.47528 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47098 * 300.00672 * 25 24 23 45 45 H 1.08999 * 109.47015 * 59.99728 * 26 24 23 46 46 H 1.08999 * 109.47124 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.46550 * 299.99444 * 26 24 23 48 48 H 1.08997 * 109.47531 * 59.99595 * 27 24 23 49 49 H 1.09004 * 109.47277 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.46505 * 299.99873 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 8 4.2217 1.9437 -0.7477 7 7 4.1297 0.8912 1.2032 8 6 5.4960 0.8933 1.3162 9 1 5.9614 1.2171 2.2354 10 6 6.2821 0.4789 0.2480 11 7 7.5780 0.6965 0.2624 12 14 5.4968 -0.3878 -1.2086 13 1 5.1937 0.6048 -2.2707 14 1 6.4332 -1.4107 -1.7396 15 1 4.2390 -1.0466 -0.7734 16 6 3.3086 0.2885 2.2562 17 6 4.0122 -0.1274 3.5496 18 6 3.5298 -1.1939 2.5632 19 7 1.6525 2.0975 -1.2517 20 6 2.1140 1.5590 -2.5337 21 6 0.8714 3.1955 -1.2241 22 8 0.4889 3.6425 -0.1609 23 8 0.5148 3.7972 -2.3746 24 6 -0.3273 4.9753 -2.2689 25 6 0.3957 6.0474 -1.4512 26 6 -0.6261 5.5159 -3.6687 27 6 -1.6395 4.6037 -1.5754 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 8.1267 0.4068 -0.4831 34 1 2.2919 0.6730 2.3376 35 1 5.0860 0.0469 3.6169 36 1 3.4582 -0.0169 4.4818 37 1 2.6588 -1.7846 2.8469 38 1 4.2860 -1.7210 1.9814 39 1 1.3915 0.8314 -2.9033 40 1 2.2132 2.3709 -3.2542 41 1 3.0806 1.0742 -2.3972 42 1 1.3307 6.3122 -1.9452 43 1 -0.2366 6.9317 -1.3715 44 1 0.6083 5.6620 -0.4539 45 1 -1.1414 4.7520 -4.2509 46 1 -1.2586 6.4001 -3.5894 47 1 0.3087 5.7806 -4.1630 48 1 -1.4271 4.2183 -0.5783 49 1 -2.2719 5.4880 -1.4965 50 1 -2.1546 3.8399 -2.1581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823520842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:04 Heat of formation + Delta-G solvation = -85.668639 kcal Electronic energy + Delta-G solvation = -31065.424115 eV Core-core repulsion = 27094.284604 eV Total energy + Delta-G solvation = -3971.139511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16677 -41.16750 -38.84803 -38.00997 -36.87931 -35.23667 -34.88705 -33.89772 -33.18268 -29.45593 -28.35393 -28.28199 -27.83712 -26.49818 -23.86847 -23.55201 -23.12539 -22.02407 -21.17754 -20.34643 -19.17963 -18.87910 -18.00388 -17.86335 -17.30373 -17.21637 -16.46666 -16.07504 -15.92249 -15.46192 -15.30322 -15.09588 -15.08616 -14.85920 -14.70756 -14.41669 -14.01978 -13.60157 -13.45810 -13.43604 -13.21248 -13.13662 -13.09119 -12.86765 -12.81299 -12.62174 -12.50909 -12.49581 -12.39111 -12.25997 -12.23844 -11.99053 -11.74537 -11.49417 -11.38437 -11.21597 -11.07066 -10.86393 -10.69476 -9.67889 -9.35002 -8.43153 -6.28519 1.01134 1.18317 1.29293 1.42674 1.68540 1.82165 2.35051 2.57480 2.80712 2.92667 3.22054 3.58650 3.76751 3.81175 3.86836 3.92321 3.96424 4.05230 4.11259 4.15658 4.30190 4.40588 4.44036 4.51060 4.56740 4.63427 4.71606 4.77148 4.83069 4.83607 4.86563 4.89048 4.91284 4.93712 5.02127 5.08158 5.12320 5.24243 5.27191 5.30176 5.35257 5.39586 5.46737 5.49049 5.67018 5.86804 6.24741 6.69026 6.84463 7.21234 7.27100 7.77089 8.64866 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.004620 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.436543 B = 6059.221953 C = 6657.892640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.153 3.847 4 H 0.123 0.877 5 C 0.444 3.556 6 O -0.577 6.577 7 N -0.446 5.446 8 C -0.330 4.330 9 H 0.066 0.934 10 C 0.039 3.961 11 N -0.917 5.917 12 Si 0.957 3.043 13 H -0.275 1.275 14 H -0.309 1.309 15 H -0.245 1.245 16 C 0.036 3.964 17 C -0.171 4.171 18 C -0.176 4.176 19 N -0.575 5.575 20 C 0.086 3.914 21 C 0.655 3.345 22 O -0.587 6.587 23 O -0.366 6.366 24 C 0.120 3.880 25 C -0.181 4.181 26 C -0.134 4.134 27 C -0.175 4.175 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.272 0.728 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.037 0.814 -3.461 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.046 3.954 4 H 0.140 0.860 5 C 0.234 3.766 6 O -0.461 6.461 7 N -0.167 5.167 8 C -0.457 4.457 9 H 0.083 0.917 10 C -0.164 4.164 11 N -0.555 5.555 12 Si 0.786 3.214 13 H -0.202 1.202 14 H -0.239 1.239 15 H -0.169 1.169 16 C -0.068 4.068 17 C -0.208 4.208 18 C -0.215 4.215 19 N -0.314 5.314 20 C -0.057 4.057 21 C 0.411 3.589 22 O -0.479 6.479 23 O -0.280 6.280 24 C 0.084 3.916 25 C -0.238 4.238 26 C -0.190 4.190 27 C -0.232 4.232 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.125 0.875 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.680 1.265 -3.683 22.027 hybrid contribution 1.153 -0.022 -0.596 1.299 sum -20.527 1.243 -4.279 21.005 Atomic orbital electron populations 1.21633 0.92405 1.03017 1.01996 1.22187 0.98732 0.92120 1.04687 1.20979 0.90484 0.96691 0.87247 0.85977 1.21475 0.90953 0.79836 0.84321 1.90501 1.65883 1.48259 1.41466 1.43228 1.04967 1.50059 1.18436 1.18580 0.79942 1.45258 1.01915 0.91681 1.26051 0.94969 0.94871 1.00558 1.69792 1.06671 1.45714 1.33346 0.85594 0.78668 0.76325 0.80766 1.20247 1.23871 1.16878 1.22296 0.96040 0.96495 0.91963 1.23203 1.01023 1.02985 0.93611 1.23356 1.03998 0.91346 1.02754 1.46292 1.49997 1.27018 1.08064 1.21830 0.99980 1.00203 0.83661 1.17947 0.78401 0.79894 0.82693 1.90837 1.59993 1.66007 1.31024 1.86328 1.65958 1.43565 1.32174 1.22499 0.89073 0.81116 0.98891 1.22483 1.00991 0.99376 1.00977 1.21874 1.02965 1.02214 0.91992 1.22439 0.95498 1.03539 1.01709 0.89978 0.91788 0.93767 0.92061 0.87575 0.91910 0.83603 0.90748 0.85379 0.84592 0.91083 0.90033 0.90602 0.92593 0.93159 0.88452 0.92362 0.90781 0.87541 0.91971 0.91846 0.88816 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.80 71.98 0.71 -2.16 16 2 C -0.14 -3.92 4.99 30.59 0.15 -3.77 16 3 C 0.15 5.49 1.66 44.25 0.07 5.57 16 4 H 0.12 4.34 6.33 -2.38 -0.02 4.32 16 5 C 0.44 20.76 4.91 87.66 0.43 21.19 16 6 O -0.58 -31.87 10.51 -3.05 -0.03 -31.90 16 7 N -0.45 -20.82 2.44 -613.15 -1.49 -22.32 16 8 C -0.33 -18.71 8.47 84.04 0.71 -18.00 16 9 H 0.07 4.01 7.15 -2.91 -0.02 3.99 16 10 C 0.04 2.31 5.03 84.93 0.43 2.74 16 11 N -0.92 -57.99 13.96 21.66 0.30 -57.69 16 12 Si 0.96 49.33 23.90 68.60 1.64 50.97 16 13 H -0.28 -14.94 5.89 99.48 0.59 -14.35 16 14 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 15 H -0.25 -11.25 7.06 99.48 0.70 -10.54 16 16 C 0.04 1.24 4.30 44.99 0.19 1.43 16 17 C -0.17 -5.40 9.84 30.62 0.30 -5.10 16 18 C -0.18 -5.22 9.40 30.62 0.29 -4.93 16 19 N -0.58 -20.50 1.99 -957.17 -1.90 -22.40 16 20 C 0.09 2.86 8.95 127.77 1.14 4.01 16 21 C 0.66 22.90 7.70 129.79 1.00 23.90 16 22 O -0.59 -21.75 11.21 19.81 0.22 -21.52 16 23 O -0.37 -11.15 8.71 -55.50 -0.48 -11.63 16 24 C 0.12 2.82 1.13 -10.79 -0.01 2.81 16 25 C -0.18 -4.53 8.37 71.98 0.60 -3.92 16 26 C -0.13 -2.15 8.85 71.98 0.64 -1.51 16 27 C -0.17 -3.60 8.37 71.98 0.60 -3.00 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 31 H 0.06 1.84 7.51 -2.39 -0.02 1.82 16 32 H 0.11 2.82 4.35 -2.39 -0.01 2.81 16 33 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 34 H 0.15 4.03 6.20 -2.39 -0.01 4.02 16 35 H 0.07 2.93 6.59 -2.39 -0.02 2.92 16 36 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 2.45 7.37 -2.39 -0.02 2.44 16 41 H 0.06 2.24 4.83 -2.39 -0.01 2.23 16 42 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.84 5.88 -2.38 -0.01 1.82 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.67 5.88 -2.39 -0.01 1.66 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -77.02 378.53 6.31 -70.71 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.80 Total: 26.55 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.26 Total: 19.25 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.09 Total: -102.41 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -0.29 Total: -65.06 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.64 Total: 50.97 kcal Total: -77.02 6.31 -70.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823520842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.960 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds