Wall clock time and date at job start Tue Mar 31 2020 15:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 H 1.08998 * 109.47163 * 54.53244 * 3 2 1 5 5 C 1.53007 * 109.46740 * 294.53413 * 3 2 1 6 6 C 1.52992 * 109.47109 * 174.53619 * 3 2 1 7 7 H 1.09003 * 109.47174 * 302.03495 * 6 3 2 8 8 N 1.46498 * 109.47343 * 62.03409 * 6 3 2 9 9 C 1.34775 * 119.99889 * 204.99800 * 8 6 3 10 10 O 1.21275 * 120.00369 * 0.02562 * 9 8 6 11 11 C 1.50712 * 120.00096 * 180.02562 * 9 8 6 12 12 N 1.46896 * 109.47287 * 180.02562 * 11 9 8 13 13 C 1.46848 * 110.99802 * 294.20925 * 12 11 9 14 14 C 1.53037 * 109.52454 * 174.15974 * 13 12 11 15 15 C 1.53126 * 109.27631 * 59.18023 * 14 13 12 16 16 C 1.50694 * 109.57630 * 182.41170 * 15 14 13 17 17 H 1.07995 * 120.00273 * 119.71531 * 16 15 14 18 18 C 1.37885 * 119.99599 * 299.71221 * 16 15 14 19 19 N 1.31515 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47280 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46604 * 120.00369 * 20 18 16 23 23 H 1.48501 * 109.47002 * 240.00227 * 20 18 16 24 24 C 1.53126 * 109.15794 * 302.34724 * 15 14 13 25 25 C 1.46843 * 110.99980 * 170.00162 * 12 11 9 26 26 C 1.50700 * 109.47340 * 182.03897 * 6 3 2 27 27 O 1.20834 * 119.99737 * 261.93933 * 26 6 3 28 28 O 1.34220 * 120.00443 * 81.93058 * 26 6 3 29 29 H 1.08998 * 109.46735 * 60.00590 * 1 2 3 30 30 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46815 * 300.00278 * 1 2 3 32 32 H 1.09004 * 109.47181 * 239.99627 * 2 1 3 33 33 H 1.09004 * 109.46466 * 119.99744 * 2 1 3 34 34 H 1.08998 * 109.47154 * 299.99836 * 5 3 2 35 35 H 1.09000 * 109.47034 * 59.99841 * 5 3 2 36 36 H 1.09001 * 109.46796 * 180.02562 * 5 3 2 37 37 H 0.97004 * 120.00196 * 24.72766 * 8 6 3 38 38 H 1.09001 * 109.46986 * 300.00300 * 11 9 8 39 39 H 1.08994 * 109.46567 * 60.00147 * 11 9 8 40 40 H 1.08999 * 109.46105 * 294.18003 * 13 12 11 41 41 H 1.09004 * 109.46303 * 54.14750 * 13 12 11 42 42 H 1.08998 * 109.50325 * 299.24324 * 14 13 12 43 43 H 1.09000 * 109.50645 * 179.11487 * 14 13 12 44 44 H 1.09001 * 109.52208 * 62.24861 * 15 14 13 45 45 H 0.96989 * 120.00221 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.50100 * 297.70905 * 24 15 14 47 47 H 1.08997 * 109.53010 * 177.61553 * 24 15 14 48 48 H 1.09004 * 109.46183 * 305.85164 * 25 12 11 49 49 H 1.08995 * 109.46326 * 65.83248 * 25 12 11 50 50 H 0.96703 * 117.00462 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 0.8370 5 6 1.6454 2.1229 -1.3124 6 6 3.5639 1.4446 0.1373 7 1 3.8467 0.9279 1.0545 8 7 4.1588 0.7592 -1.0126 9 6 5.3767 0.1925 -0.9031 10 8 5.9799 0.2494 0.1474 11 6 5.9891 -0.5122 -2.0863 12 7 7.3080 -1.0403 -1.7129 13 6 8.2486 0.0496 -1.4235 14 6 9.5626 -0.5343 -0.8996 15 6 10.1525 -1.4765 -1.9527 16 6 11.4163 -2.1011 -1.4201 17 1 11.4873 -3.1739 -1.3187 18 6 12.4820 -1.3028 -1.0623 19 7 12.3955 0.0038 -1.1854 20 14 14.0484 -2.0769 -0.4015 21 1 13.8919 -3.5531 -0.3605 22 1 15.1866 -1.7247 -1.2878 23 1 14.3120 -1.5684 0.9686 24 6 9.1340 -2.5746 -2.2715 25 6 7.8325 -1.9314 -2.7556 26 6 4.0617 2.8661 0.1877 27 8 4.4922 3.3912 -0.8118 28 8 4.0269 3.5490 1.3427 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8935 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.0864 1.5816 -2.1493 35 1 0.5598 2.1213 -1.4102 36 1 2.0091 3.1504 -1.3126 37 1 3.6746 0.7099 -1.8517 38 1 5.3428 -1.3342 -2.3941 39 1 6.0994 0.1918 -2.9111 40 1 8.4405 0.6154 -2.3351 41 1 7.8187 0.7099 -0.6701 42 1 9.3735 -1.0888 0.0196 43 1 10.2660 0.2740 -0.6997 44 1 10.3778 -0.9144 -2.8590 45 1 13.1450 0.5653 -0.9333 46 1 8.9383 -3.1611 -1.3738 47 1 9.5309 -3.2244 -3.0514 48 1 7.1004 -2.7101 -2.9698 49 1 8.0265 -1.3563 -3.6609 50 1 4.3567 4.4578 1.3256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833638571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:08 Heat of formation + Delta-G solvation = -137.637499 kcal Electronic energy + Delta-G solvation = -29124.279804 eV Core-core repulsion = 25150.886754 eV Total energy + Delta-G solvation = -3973.393049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04975 -39.54720 -38.00455 -37.13792 -36.23327 -33.86107 -33.79362 -31.46249 -30.56279 -29.66877 -28.46105 -27.01327 -24.87237 -24.64798 -22.07231 -21.99801 -21.44533 -20.66149 -20.06787 -18.53236 -18.29858 -17.34499 -16.98498 -16.34219 -16.19227 -15.75395 -15.32691 -15.06130 -14.72178 -14.50454 -14.31676 -14.06813 -13.91323 -13.77846 -13.35901 -12.79350 -12.77905 -12.53337 -12.47494 -12.32660 -12.17070 -11.99350 -11.70615 -11.59153 -11.52285 -11.30387 -11.23568 -11.03908 -10.90560 -10.73769 -10.68193 -10.46614 -10.13295 -9.89745 -9.74544 -9.37163 -9.28379 -8.88872 -8.55339 -8.20699 -7.72765 -5.88926 -3.94059 1.96668 2.41851 2.79923 3.16446 3.36004 3.43763 3.47906 4.12281 4.35425 4.36331 4.48183 4.52713 4.78777 4.86480 4.95494 5.00928 5.07883 5.16515 5.25115 5.34384 5.40779 5.43346 5.44734 5.53040 5.55877 5.65958 5.74859 5.85954 5.92082 5.92528 6.10312 6.18122 6.29523 6.30295 6.41850 6.70880 6.80805 6.93170 7.11922 7.22209 7.29858 7.53962 7.67724 7.69357 7.75261 7.91328 8.15397 8.24393 8.26719 8.57451 9.09855 9.69844 11.17331 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002665 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.293011 B =10505.599528 C =11230.533512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.096 0.904 5 C -0.157 4.157 6 C 0.163 3.837 7 H 0.124 0.876 8 N -0.717 5.717 9 C 0.517 3.483 10 O -0.504 6.504 11 C 0.038 3.962 12 N -0.518 5.518 13 C 0.053 3.947 14 C -0.100 4.100 15 C 0.046 3.954 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.105 4.105 25 C 0.061 3.939 26 C 0.468 3.532 27 O -0.505 6.505 28 O -0.515 6.515 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.258 0.742 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.025 0.975 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.719 4.186 0.055 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.114 0.886 5 C -0.214 4.214 6 C 0.055 3.945 7 H 0.142 0.858 8 N -0.374 5.374 9 C 0.303 3.697 10 O -0.376 6.376 11 C -0.094 4.094 12 N -0.243 5.243 13 C -0.073 4.073 14 C -0.138 4.138 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.073 0.927 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.066 4.066 26 C 0.308 3.692 27 O -0.392 6.392 28 O -0.326 6.326 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.241 0.759 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.043 0.957 50 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -26.198 3.838 1.009 26.497 hybrid contribution 1.028 0.925 -0.829 1.612 sum -25.170 4.763 0.180 25.618 Atomic orbital electron populations 1.21821 0.95239 1.02000 1.02009 1.21558 0.96205 0.94512 1.03203 1.21432 0.90539 0.98721 1.00374 0.88618 1.21983 1.02282 1.00781 0.96387 1.20388 0.93869 0.86669 0.93537 0.85795 1.45871 1.20071 1.56762 1.14738 1.20923 0.80130 0.77923 0.90685 1.90735 1.59874 1.57507 1.29506 1.21902 0.94508 0.99131 0.93869 1.61775 1.00600 1.19973 1.41973 1.22430 0.94432 0.91782 0.98691 1.21602 0.92072 1.01197 0.98907 1.18717 0.91916 0.91835 0.94774 1.21239 0.98071 0.93045 1.42284 0.92713 1.24983 0.98516 0.94838 0.95786 1.69894 1.31147 1.03224 1.48827 0.86582 0.83571 0.79507 0.78597 1.19843 1.21216 1.21105 1.21667 0.93401 0.99296 0.99936 1.22159 0.97827 0.94923 0.91698 1.24107 0.74925 0.89659 0.80506 1.90724 1.42528 1.69846 1.36082 1.84519 1.78554 1.32078 1.37486 0.92395 0.92415 0.92587 0.91259 0.91130 0.92143 0.91215 0.92280 0.75887 0.88299 0.92318 0.96566 0.91011 0.93708 0.89118 0.96242 0.93214 0.92366 0.93070 0.92333 0.95669 0.73134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.68 37.16 0.36 -0.35 16 2 C -0.12 -0.66 5.18 -26.73 -0.14 -0.80 16 3 C -0.09 -0.59 2.21 -90.62 -0.20 -0.79 16 4 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.16 -0.95 8.53 37.16 0.32 -0.63 16 6 C 0.16 1.61 2.21 -69.09 -0.15 1.45 16 7 H 0.12 1.35 7.58 -51.93 -0.39 0.95 16 8 N -0.72 -7.54 4.02 -54.93 -0.22 -7.76 16 9 C 0.52 7.61 7.46 -10.98 -0.08 7.53 16 10 O -0.50 -9.66 13.99 5.56 0.08 -9.58 16 11 C 0.04 0.53 5.45 -4.97 -0.03 0.50 16 12 N -0.52 -9.76 4.40 -236.12 -1.04 -10.79 16 13 C 0.05 1.17 5.11 -3.83 -0.02 1.15 16 14 C -0.10 -2.55 5.13 -26.65 -0.14 -2.69 16 15 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 16 C -0.51 -14.44 8.56 -34.44 -0.29 -14.74 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 19 N -0.89 -26.41 11.37 55.43 0.63 -25.78 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 25 C 0.06 1.11 5.46 -3.84 -0.02 1.09 16 26 C 0.47 5.51 6.51 36.01 0.23 5.74 16 27 O -0.51 -7.41 16.93 -18.76 -0.32 -7.73 16 28 O -0.52 -4.91 13.42 -39.23 -0.53 -5.43 16 29 H 0.06 0.24 6.58 -51.93 -0.34 -0.10 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.39 7.76 -51.93 -0.40 -0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.34 6.41 -51.93 -0.33 0.01 16 35 H 0.07 0.32 6.58 -51.93 -0.34 -0.02 16 36 H 0.06 0.45 6.99 -51.93 -0.36 0.09 16 37 H 0.40 3.17 6.66 -40.82 -0.27 2.90 16 38 H 0.10 1.08 7.99 -51.93 -0.41 0.66 16 39 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 1.63 5.78 -51.93 -0.30 1.33 16 42 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.09 2.58 6.17 -51.93 -0.32 2.26 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.88 8.02 -51.93 -0.42 0.47 16 49 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.41 2.35 9.10 45.56 0.41 2.77 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -35.34 390.46 -8.80 -44.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.68 Total: 2.42 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.60 Total: -2.32 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.63 Total: -44.34 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.77 Total: -22.75 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.34 -8.80 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833638571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.497 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds