Wall clock time and date at job start Tue Mar 31 2020 15:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 H 1.08998 * 109.47163 * 54.53244 * 3 2 1 5 5 C 1.53007 * 109.46740 * 294.53413 * 3 2 1 6 6 C 1.52992 * 109.47109 * 174.53619 * 3 2 1 7 7 H 1.09003 * 109.47174 * 302.03495 * 6 3 2 8 8 N 1.46498 * 109.47343 * 62.03409 * 6 3 2 9 9 C 1.34775 * 119.99889 * 204.99800 * 8 6 3 10 10 O 1.21275 * 120.00369 * 0.02562 * 9 8 6 11 11 C 1.50712 * 120.00096 * 180.02562 * 9 8 6 12 12 N 1.46896 * 109.47287 * 180.02562 * 11 9 8 13 13 C 1.46848 * 110.99802 * 294.20925 * 12 11 9 14 14 C 1.53037 * 109.52454 * 174.15974 * 13 12 11 15 15 C 1.53126 * 109.27631 * 59.18023 * 14 13 12 16 16 C 1.50694 * 109.57630 * 182.41170 * 15 14 13 17 17 H 1.07995 * 120.00273 * 119.71531 * 16 15 14 18 18 C 1.37885 * 119.99599 * 299.71221 * 16 15 14 19 19 N 1.31515 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47280 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46604 * 120.00369 * 20 18 16 23 23 H 1.48501 * 109.47002 * 240.00227 * 20 18 16 24 24 C 1.53126 * 109.15794 * 302.34724 * 15 14 13 25 25 C 1.46843 * 110.99980 * 170.00162 * 12 11 9 26 26 C 1.50700 * 109.47340 * 182.03897 * 6 3 2 27 27 O 1.20834 * 119.99737 * 261.93933 * 26 6 3 28 28 O 1.34220 * 120.00443 * 81.93058 * 26 6 3 29 29 H 1.08998 * 109.46735 * 60.00590 * 1 2 3 30 30 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46815 * 300.00278 * 1 2 3 32 32 H 1.09004 * 109.47181 * 239.99627 * 2 1 3 33 33 H 1.09004 * 109.46466 * 119.99744 * 2 1 3 34 34 H 1.08998 * 109.47154 * 299.99836 * 5 3 2 35 35 H 1.09000 * 109.47034 * 59.99841 * 5 3 2 36 36 H 1.09001 * 109.46796 * 180.02562 * 5 3 2 37 37 H 0.97004 * 120.00196 * 24.72766 * 8 6 3 38 38 H 1.09001 * 109.46986 * 300.00300 * 11 9 8 39 39 H 1.08994 * 109.46567 * 60.00147 * 11 9 8 40 40 H 1.08999 * 109.46105 * 294.18003 * 13 12 11 41 41 H 1.09004 * 109.46303 * 54.14750 * 13 12 11 42 42 H 1.08998 * 109.50325 * 299.24324 * 14 13 12 43 43 H 1.09000 * 109.50645 * 179.11487 * 14 13 12 44 44 H 1.09001 * 109.52208 * 62.24861 * 15 14 13 45 45 H 0.96989 * 120.00221 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.50100 * 297.70905 * 24 15 14 47 47 H 1.08997 * 109.53010 * 177.61553 * 24 15 14 48 48 H 1.09004 * 109.46183 * 305.85164 * 25 12 11 49 49 H 1.08995 * 109.46326 * 65.83248 * 25 12 11 50 50 H 0.96703 * 117.00462 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 0.8370 5 6 1.6454 2.1229 -1.3124 6 6 3.5639 1.4446 0.1373 7 1 3.8467 0.9279 1.0545 8 7 4.1588 0.7592 -1.0126 9 6 5.3767 0.1925 -0.9031 10 8 5.9799 0.2494 0.1474 11 6 5.9891 -0.5122 -2.0863 12 7 7.3080 -1.0403 -1.7129 13 6 8.2486 0.0496 -1.4235 14 6 9.5626 -0.5343 -0.8996 15 6 10.1525 -1.4765 -1.9527 16 6 11.4163 -2.1011 -1.4201 17 1 11.4873 -3.1739 -1.3187 18 6 12.4820 -1.3028 -1.0623 19 7 12.3955 0.0038 -1.1854 20 14 14.0484 -2.0769 -0.4015 21 1 13.8919 -3.5531 -0.3605 22 1 15.1866 -1.7247 -1.2878 23 1 14.3120 -1.5684 0.9686 24 6 9.1340 -2.5746 -2.2715 25 6 7.8325 -1.9314 -2.7556 26 6 4.0617 2.8661 0.1877 27 8 4.4922 3.3912 -0.8118 28 8 4.0269 3.5490 1.3427 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8935 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.0864 1.5816 -2.1493 35 1 0.5598 2.1213 -1.4102 36 1 2.0091 3.1504 -1.3126 37 1 3.6746 0.7099 -1.8517 38 1 5.3428 -1.3342 -2.3941 39 1 6.0994 0.1918 -2.9111 40 1 8.4405 0.6154 -2.3351 41 1 7.8187 0.7099 -0.6701 42 1 9.3735 -1.0888 0.0196 43 1 10.2660 0.2740 -0.6997 44 1 10.3778 -0.9144 -2.8590 45 1 13.1450 0.5653 -0.9333 46 1 8.9383 -3.1611 -1.3738 47 1 9.5309 -3.2244 -3.0514 48 1 7.1004 -2.7101 -2.9698 49 1 8.0265 -1.3563 -3.6609 50 1 4.3567 4.4578 1.3256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833638571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:07 Heat of formation + Delta-G solvation = -163.131816 kcal Electronic energy + Delta-G solvation = -29125.385320 eV Core-core repulsion = 25150.886754 eV Total energy + Delta-G solvation = -3974.498566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97971 -40.72144 -39.35528 -38.09552 -37.13078 -35.67234 -34.73512 -33.30993 -31.47031 -31.27505 -29.42213 -28.31182 -26.44768 -25.38694 -23.79523 -23.47375 -22.49161 -21.69464 -20.79013 -20.37229 -19.20543 -18.46700 -18.32575 -17.96713 -17.18859 -16.76252 -16.64636 -16.29868 -16.13665 -15.55529 -15.46752 -15.26104 -14.92527 -14.73983 -14.52821 -14.42136 -14.15403 -13.98934 -13.85258 -13.09811 -13.02372 -12.99572 -12.93939 -12.86167 -12.56962 -12.55361 -12.45772 -12.33077 -12.20233 -12.02298 -11.87325 -11.82211 -11.53046 -11.45880 -11.37732 -11.06894 -10.80575 -10.53388 -10.38888 -10.31394 -9.19979 -8.08155 -6.21793 1.04840 1.38725 1.40314 1.43879 1.52259 1.82049 2.28434 2.43260 3.07141 3.18728 3.48896 3.73316 3.83448 3.90797 4.15454 4.20616 4.26351 4.30544 4.35413 4.40266 4.46323 4.50205 4.58758 4.61162 4.68816 4.75659 4.78691 4.90549 4.99094 5.01171 5.08660 5.10064 5.13588 5.22453 5.25211 5.29344 5.33477 5.42770 5.51826 5.55584 5.57837 5.61696 5.97136 5.99154 6.15953 6.28209 6.40383 6.47443 6.87654 6.90976 7.18919 7.45970 8.96811 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002665 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.293011 B =10505.599528 C =11230.533512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.081 4.081 4 H 0.105 0.895 5 C -0.155 4.155 6 C 0.160 3.840 7 H 0.114 0.886 8 N -0.698 5.698 9 C 0.515 3.485 10 O -0.557 6.557 11 C 0.036 3.964 12 N -0.531 5.531 13 C 0.072 3.928 14 C -0.089 4.089 15 C 0.043 3.957 16 C -0.530 4.530 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.921 5.921 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.283 1.283 24 C -0.100 4.100 25 C 0.067 3.933 26 C 0.467 3.533 27 O -0.540 6.540 28 O -0.512 6.512 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.420 0.580 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.010 0.990 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.054 0.946 44 H -0.010 1.010 45 H 0.259 0.741 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.030 0.970 50 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.085 2.999 -0.817 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.123 0.877 5 C -0.213 4.213 6 C 0.053 3.947 7 H 0.132 0.868 8 N -0.355 5.355 9 C 0.302 3.698 10 O -0.434 6.434 11 C -0.094 4.094 12 N -0.257 5.257 13 C -0.056 4.056 14 C -0.128 4.128 15 C 0.024 3.976 16 C -0.568 4.568 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.209 1.209 24 C -0.138 4.138 25 C -0.060 4.060 26 C 0.308 3.692 27 O -0.430 6.430 28 O -0.325 6.325 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.008 0.992 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.122 0.878 49 H 0.048 0.952 50 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -28.624 2.658 0.117 28.748 hybrid contribution 1.714 1.352 -0.519 2.244 sum -26.910 4.010 -0.402 27.210 Atomic orbital electron populations 1.21807 0.94170 1.02328 1.02542 1.21546 0.97047 0.93601 1.03056 1.21432 0.87693 0.99669 1.01157 0.87672 1.21984 1.03511 0.99641 0.96120 1.20601 0.96021 0.85343 0.92782 0.86846 1.45661 1.18806 1.55296 1.15690 1.21115 0.80784 0.77755 0.90106 1.90723 1.61488 1.59775 1.31403 1.22082 0.92383 1.01110 0.93856 1.61606 1.01737 1.19092 1.43233 1.22024 0.93348 0.92395 0.97827 1.21346 0.93550 0.99747 0.98136 1.18688 0.92750 0.92909 0.93208 1.21638 0.99481 0.93160 1.42522 0.92814 1.25822 1.01904 0.95311 0.96079 1.70048 1.32021 1.04496 1.49533 0.85541 0.79530 0.78975 0.77826 1.18876 1.20464 1.20930 1.21542 0.94295 0.97930 1.00021 1.22135 0.97016 0.95737 0.91103 1.24476 0.74043 0.90292 0.80343 1.90709 1.44251 1.70792 1.37209 1.84488 1.78215 1.33309 1.36481 0.91576 0.92227 0.92363 0.90875 0.91882 0.91616 0.89335 0.94011 0.74044 0.83787 0.90707 0.97172 0.92110 0.95929 0.92789 0.99176 0.93220 0.93267 0.92003 0.87822 0.95213 0.71318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.68 71.99 0.70 -0.30 16 2 C -0.11 -1.03 5.18 30.60 0.16 -0.87 16 3 C -0.08 -0.87 2.21 -10.79 -0.02 -0.90 16 4 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.16 -1.52 8.53 71.98 0.61 -0.90 16 6 C 0.16 3.00 2.21 44.24 0.10 3.10 16 7 H 0.11 2.44 7.58 -2.39 -0.02 2.42 16 8 N -0.70 -13.50 4.02 -446.11 -1.80 -15.29 16 9 C 0.51 14.53 7.46 87.66 0.65 15.19 16 10 O -0.56 -21.57 13.99 -3.01 -0.04 -21.62 16 11 C 0.04 0.92 5.45 85.56 0.47 1.39 16 12 N -0.53 -19.27 4.40 -900.93 -3.96 -23.23 16 13 C 0.07 3.22 5.11 86.33 0.44 3.67 16 14 C -0.09 -4.79 5.13 30.65 0.16 -4.63 16 15 C 0.04 2.29 2.16 -11.46 -0.02 2.27 16 16 C -0.53 -30.84 8.56 25.60 0.22 -30.62 16 17 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 18 C 0.01 0.39 5.31 84.66 0.45 0.84 16 19 N -0.92 -56.47 11.37 21.45 0.24 -56.23 16 20 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 21 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 24 C -0.10 -4.25 5.32 30.65 0.16 -4.09 16 25 C 0.07 2.25 5.46 86.33 0.47 2.72 16 26 C 0.47 10.82 6.51 71.24 0.46 11.28 16 27 O -0.54 -15.80 16.93 21.94 0.37 -15.43 16 28 O -0.51 -9.54 13.42 -51.32 -0.69 -10.23 16 29 H 0.07 0.34 6.58 -2.39 -0.02 0.32 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.60 7.76 -2.38 -0.02 0.58 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 0.56 6.41 -2.39 -0.02 0.55 16 35 H 0.09 0.55 6.58 -2.39 -0.02 0.54 16 36 H 0.04 0.58 6.99 -2.39 -0.02 0.56 16 37 H 0.42 5.44 6.66 -92.71 -0.62 4.82 16 38 H 0.14 2.40 7.99 -2.39 -0.02 2.38 16 39 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 2.87 5.78 -2.38 -0.01 2.85 16 42 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 3.25 6.17 -2.39 -0.01 3.24 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.26 15.06 8.31 -92.72 -0.77 14.29 16 46 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.10 2.62 8.02 -2.39 -0.02 2.60 16 49 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.43 4.71 9.10 -74.06 -0.67 4.04 16 Total: -1.00 -80.41 390.46 0.81 -79.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -0.34 Total: 16.40 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.00 Total: -1.84 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -5.51 Total: -94.75 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.36 Total: -47.28 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -80.41 0.81 -79.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833638571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.537 kcal (2) G-P(sol) polarization free energy of solvation -80.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds