Wall clock time and date at job start Tue Mar 31 2020 14:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 C 1.52998 * 109.47301 * 239.99932 * 2 1 3 5 5 O 1.45196 * 109.47308 * 119.99364 * 2 1 3 6 6 C 1.34644 * 116.99451 * 60.00456 * 5 2 1 7 7 O 1.21506 * 120.00220 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99866 * 179.97438 * 6 5 2 9 9 C 1.44577 * 118.64118 * 0.02562 * 8 6 5 10 10 C 1.54865 * 109.59810 * 270.72264 * 9 8 6 11 11 C 1.47091 * 110.32354 * 288.73615 * 10 9 8 12 12 C 1.52561 * 114.32613 * 62.80219 * 11 10 9 13 13 H 1.08998 * 109.48868 * 34.97656 * 12 11 10 14 14 C 1.50703 * 109.49233 * 155.02188 * 12 11 10 15 15 O 1.21283 * 119.99488 * 359.97438 * 14 12 11 16 16 N 1.34777 * 120.00290 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99828 * 180.27728 * 16 14 12 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47105 * 89.99950 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00198 * 22 20 18 25 25 H 1.48508 * 109.47164 * 330.00232 * 22 20 18 26 26 C 1.50881 * 109.36109 * 274.98509 * 12 11 10 27 27 C 1.47602 * 118.64222 * 180.02562 * 8 6 5 28 28 H 1.08993 * 109.47498 * 300.00032 * 1 2 3 29 29 H 1.09004 * 109.47094 * 60.00461 * 1 2 3 30 30 H 1.08996 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47043 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47239 * 299.99327 * 3 2 1 33 33 H 1.09001 * 109.47470 * 59.99646 * 3 2 1 34 34 H 1.08996 * 109.47389 * 299.99882 * 4 2 1 35 35 H 1.08997 * 109.47468 * 60.00177 * 4 2 1 36 36 H 1.09004 * 109.46933 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.44684 * 150.68428 * 9 8 6 38 38 H 1.09000 * 109.43081 * 30.74734 * 9 8 6 39 39 H 1.09006 * 109.32629 * 168.47326 * 10 9 8 40 40 H 1.08995 * 109.32783 * 49.00082 * 10 9 8 41 41 H 1.09007 * 108.51272 * 301.54984 * 11 10 9 42 42 H 1.08999 * 108.38965 * 183.97051 * 11 10 9 43 43 H 0.97001 * 119.99727 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 45 45 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 46 46 H 0.96999 * 120.00067 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.37004 * 212.07277 * 26 12 11 48 48 H 1.08993 * 109.36806 * 331.69602 * 26 12 11 49 49 H 1.09000 * 108.94810 * 258.55642 * 27 8 6 50 50 H 1.09001 * 108.94561 * 17.27448 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6843 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0681 -2.6656 2.4168 9 6 2.9011 -1.9974 3.3914 10 6 4.3908 -2.1624 3.0018 11 6 4.8247 -3.5511 3.2182 12 6 4.0938 -4.5788 2.3597 13 1 3.8723 -4.1461 1.3841 14 6 4.9637 -5.7968 2.1837 15 8 6.0623 -5.8365 2.6961 16 7 4.5213 -6.8415 1.4560 17 6 5.3646 -8.0279 1.2900 18 6 4.6403 -9.0447 0.4459 19 1 3.6507 -8.8290 0.0710 20 6 5.2410 -10.2506 0.1523 21 7 6.4459 -10.5135 0.6092 22 14 4.3430 -11.5113 -0.8934 23 1 4.6641 -11.2856 -2.3256 24 1 4.7720 -12.8773 -0.4993 25 1 2.8789 -11.3734 -0.6867 26 6 2.8063 -4.9740 3.0398 27 6 1.6543 -4.0758 2.5539 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 2.7323 -2.4361 4.3748 38 1 2.6483 -0.9374 3.4185 39 1 4.9994 -1.4950 3.6121 40 1 4.5197 -1.9037 1.9509 41 1 4.6688 -3.8029 4.2673 42 1 5.8912 -3.6157 3.0028 43 1 3.6429 -6.8095 1.0459 44 1 6.2962 -7.7458 0.7994 45 1 5.5842 -8.4573 2.2674 46 1 6.8684 -11.3619 0.4030 47 1 2.5777 -6.0136 2.8051 48 1 2.9191 -4.8652 4.1184 49 1 0.8332 -4.1358 3.2683 50 1 1.3082 -4.4388 1.5861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843869138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:41 Heat of formation + Delta-G solvation = -133.072538 kcal Electronic energy + Delta-G solvation = -29420.863692 eV Core-core repulsion = 25447.668594 eV Total energy + Delta-G solvation = -3973.195098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16465 -39.68553 -38.11996 -36.62809 -34.50817 -34.26171 -33.46625 -32.87863 -32.08336 -27.87498 -27.66289 -27.58161 -26.90780 -25.58789 -23.36783 -22.73802 -20.97204 -20.87136 -19.47058 -19.19303 -18.07195 -17.17867 -16.97101 -16.32130 -15.92049 -15.67050 -15.31016 -14.90983 -14.73659 -14.50350 -14.26188 -14.11277 -13.87381 -13.75269 -13.33209 -12.97206 -12.81847 -12.69211 -12.56210 -12.32091 -12.14631 -12.11604 -11.96695 -11.90266 -11.63063 -11.58028 -11.44704 -11.19629 -10.97972 -10.94378 -10.87534 -10.68875 -10.54037 -10.51640 -10.29756 -10.06996 -9.39029 -9.01969 -8.80455 -8.72720 -7.87330 -6.16220 -4.23019 2.00122 2.71764 3.24999 3.31151 3.33601 3.36006 3.65439 4.04479 4.36406 4.48307 4.52554 4.62544 4.67279 4.72431 4.81127 4.93556 4.97993 5.19853 5.21238 5.21998 5.29828 5.30561 5.39604 5.43935 5.47478 5.50221 5.53577 5.63795 5.70361 5.71592 5.74398 5.78037 5.97101 6.02586 6.06162 6.07164 6.13768 6.29363 6.34502 6.41021 6.46794 7.20826 7.31306 7.44802 7.52028 7.67338 7.97635 8.22123 8.63669 8.78663 9.10959 9.43753 10.93996 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002881 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.690964 B = 9716.952694 C =10646.400473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.647 3.353 7 O -0.568 6.568 8 N -0.586 5.586 9 C 0.113 3.887 10 C -0.131 4.131 11 C -0.108 4.108 12 C -0.102 4.102 13 H 0.091 0.909 14 C 0.501 3.499 15 O -0.556 6.556 16 N -0.712 5.712 17 C 0.250 3.750 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.126 4.126 27 C 0.128 3.872 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.390 0.610 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.266 0.734 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 23.757 3.210 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.402 3.598 7 O -0.458 6.458 8 N -0.326 5.326 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.146 4.146 12 C -0.123 4.123 13 H 0.109 0.891 14 C 0.286 3.714 15 O -0.435 6.435 16 N -0.360 5.360 17 C 0.129 3.871 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.165 4.165 27 C 0.008 3.992 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.223 0.777 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.220 23.427 3.290 26.183 hybrid contribution -0.749 -0.775 -0.842 1.368 sum -11.968 22.652 2.447 25.736 Atomic orbital electron populations 1.22509 0.94123 1.05069 1.02277 1.22049 0.94245 0.91509 0.82360 1.21851 1.02328 0.92586 1.02945 1.22518 1.01706 1.03593 0.96332 1.86317 1.71393 1.23713 1.46110 1.18127 0.78995 0.80634 0.82014 1.90892 1.41455 1.70267 1.43163 1.46679 1.52704 1.11728 1.21507 1.21645 0.90017 0.97602 0.91809 1.21255 0.95733 0.97500 1.02518 1.20300 1.01805 0.92881 0.99568 1.20773 0.95156 0.95191 1.01209 0.89089 1.20421 0.87267 0.84438 0.79289 1.90638 1.21820 1.81583 1.49459 1.46468 1.20859 1.17842 1.50795 1.19096 0.90381 0.80522 0.97101 1.21233 1.02824 1.00777 1.33266 0.91894 1.24953 0.94935 0.98180 0.95947 1.69976 1.13775 1.24205 1.44388 0.86421 0.79836 0.80362 0.80341 1.20462 1.21014 1.19697 1.21864 0.93251 1.00195 1.01181 1.21917 0.96222 0.77434 1.03672 0.92344 0.91268 0.89334 0.91424 0.90259 0.91593 0.89262 0.91251 0.92092 0.90121 0.89926 0.90475 0.91717 0.91852 0.90269 0.77706 0.95646 0.95553 0.92466 0.89201 0.90613 0.91183 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.84 8.37 37.16 0.31 -1.52 16 5 O -0.36 -4.00 8.56 -40.34 -0.35 -4.34 16 6 C 0.65 8.04 7.64 54.06 0.41 8.45 16 7 O -0.57 -8.23 11.16 -19.28 -0.22 -8.45 16 8 N -0.59 -6.30 2.24 -178.33 -0.40 -6.70 16 9 C 0.11 1.00 5.39 -4.09 -0.02 0.98 16 10 C -0.13 -1.31 5.73 -28.58 -0.16 -1.47 16 11 C -0.11 -1.37 4.33 -29.79 -0.13 -1.50 16 12 C -0.10 -1.44 2.14 -93.06 -0.20 -1.64 16 13 H 0.09 1.32 7.48 -51.93 -0.39 0.93 16 14 C 0.50 9.92 7.06 -10.98 -0.08 9.84 16 15 O -0.56 -13.26 15.44 5.55 0.09 -13.17 16 16 N -0.71 -15.01 5.17 -61.47 -0.32 -15.33 16 17 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 18 C -0.54 -14.81 9.28 -34.44 -0.32 -15.12 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 22 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C -0.13 -1.45 5.18 -27.30 -0.14 -1.59 16 27 C 0.13 1.34 6.10 -2.94 -0.02 1.32 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.76 7.36 -51.92 -0.38 0.38 16 42 H 0.08 1.21 7.01 -51.93 -0.36 0.85 16 43 H 0.39 7.18 7.82 -40.82 -0.32 6.86 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 48 H 0.08 0.79 7.32 -51.93 -0.38 0.41 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 1.14 6.95 -51.93 -0.36 0.77 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -33.16 388.82 -8.12 -41.28 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.57 Total: 5.12 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 0.07 Total: 5.24 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.02 Total: -47.53 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.47 Total: -25.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.16 -8.12 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843869138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.790 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds