Wall clock time and date at job start Tue Mar 31 2020 14:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 C 1.52998 * 109.47301 * 239.99932 * 2 1 3 5 5 O 1.45196 * 109.47308 * 119.99364 * 2 1 3 6 6 C 1.34644 * 116.99451 * 60.00456 * 5 2 1 7 7 O 1.21506 * 120.00220 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99866 * 179.97438 * 6 5 2 9 9 C 1.44577 * 118.64118 * 0.02562 * 8 6 5 10 10 C 1.54865 * 109.59810 * 270.72264 * 9 8 6 11 11 C 1.47091 * 110.32354 * 288.73615 * 10 9 8 12 12 C 1.52561 * 114.32613 * 62.80219 * 11 10 9 13 13 H 1.08998 * 109.48868 * 34.97656 * 12 11 10 14 14 C 1.50703 * 109.49233 * 155.02188 * 12 11 10 15 15 O 1.21283 * 119.99488 * 359.97438 * 14 12 11 16 16 N 1.34777 * 120.00290 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99828 * 180.27728 * 16 14 12 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47105 * 89.99950 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00198 * 22 20 18 25 25 H 1.48508 * 109.47164 * 330.00232 * 22 20 18 26 26 C 1.50881 * 109.36109 * 274.98509 * 12 11 10 27 27 C 1.47602 * 118.64222 * 180.02562 * 8 6 5 28 28 H 1.08993 * 109.47498 * 300.00032 * 1 2 3 29 29 H 1.09004 * 109.47094 * 60.00461 * 1 2 3 30 30 H 1.08996 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47043 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47239 * 299.99327 * 3 2 1 33 33 H 1.09001 * 109.47470 * 59.99646 * 3 2 1 34 34 H 1.08996 * 109.47389 * 299.99882 * 4 2 1 35 35 H 1.08997 * 109.47468 * 60.00177 * 4 2 1 36 36 H 1.09004 * 109.46933 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.44684 * 150.68428 * 9 8 6 38 38 H 1.09000 * 109.43081 * 30.74734 * 9 8 6 39 39 H 1.09006 * 109.32629 * 168.47326 * 10 9 8 40 40 H 1.08995 * 109.32783 * 49.00082 * 10 9 8 41 41 H 1.09007 * 108.51272 * 301.54984 * 11 10 9 42 42 H 1.08999 * 108.38965 * 183.97051 * 11 10 9 43 43 H 0.97001 * 119.99727 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 45 45 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 46 46 H 0.96999 * 120.00067 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.37004 * 212.07277 * 26 12 11 48 48 H 1.08993 * 109.36806 * 331.69602 * 26 12 11 49 49 H 1.09000 * 108.94810 * 258.55642 * 27 8 6 50 50 H 1.09001 * 108.94561 * 17.27448 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6843 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5041 8 7 2.0681 -2.6656 2.4168 9 6 2.9011 -1.9974 3.3914 10 6 4.3908 -2.1624 3.0018 11 6 4.8247 -3.5511 3.2182 12 6 4.0938 -4.5788 2.3597 13 1 3.8723 -4.1461 1.3841 14 6 4.9637 -5.7968 2.1837 15 8 6.0623 -5.8365 2.6961 16 7 4.5213 -6.8415 1.4560 17 6 5.3646 -8.0279 1.2900 18 6 4.6403 -9.0447 0.4459 19 1 3.6507 -8.8290 0.0710 20 6 5.2410 -10.2506 0.1523 21 7 6.4459 -10.5135 0.6092 22 14 4.3430 -11.5113 -0.8934 23 1 4.6641 -11.2856 -2.3256 24 1 4.7720 -12.8773 -0.4993 25 1 2.8789 -11.3734 -0.6867 26 6 2.8063 -4.9740 3.0398 27 6 1.6543 -4.0758 2.5539 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 2.7323 -2.4361 4.3748 38 1 2.6483 -0.9374 3.4185 39 1 4.9994 -1.4950 3.6121 40 1 4.5197 -1.9037 1.9509 41 1 4.6688 -3.8029 4.2673 42 1 5.8912 -3.6157 3.0028 43 1 3.6429 -6.8095 1.0459 44 1 6.2962 -7.7458 0.7994 45 1 5.5842 -8.4573 2.2674 46 1 6.8684 -11.3619 0.4030 47 1 2.5777 -6.0136 2.8051 48 1 2.9191 -4.8652 4.1184 49 1 0.8332 -4.1358 3.2683 50 1 1.3082 -4.4388 1.5861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843869138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:40 Heat of formation + Delta-G solvation = -154.281551 kcal Electronic energy + Delta-G solvation = -29421.783384 eV Core-core repulsion = 25447.668594 eV Total energy + Delta-G solvation = -3974.114790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06680 -41.04245 -39.25576 -37.61304 -36.21753 -35.41484 -34.49067 -34.37245 -33.48621 -29.62233 -28.32461 -28.25215 -28.16075 -26.66086 -24.77118 -24.14730 -22.29560 -21.75456 -20.90581 -20.13824 -19.21224 -18.60567 -17.88729 -17.59333 -17.17978 -17.05864 -16.75977 -16.26839 -16.01391 -15.60863 -15.49315 -15.14160 -15.05398 -14.57574 -14.43052 -14.26780 -14.06802 -13.96357 -13.66584 -13.43229 -13.25902 -13.04196 -12.96274 -12.88194 -12.80987 -12.76683 -12.67156 -12.42412 -12.25063 -12.20825 -12.11269 -11.85946 -11.72142 -11.55093 -11.49898 -11.32201 -10.96188 -10.82452 -10.68459 -9.86532 -9.69335 -8.31261 -6.47837 1.19277 1.41529 1.43669 1.55069 1.71681 1.80983 2.29716 2.53482 2.89320 3.03536 3.62384 3.67928 3.80276 3.82300 3.85556 3.99743 4.02091 4.09313 4.25485 4.37006 4.43206 4.54808 4.63249 4.65237 4.72976 4.74143 4.80599 4.84070 4.87335 4.92598 4.95335 4.97895 5.07654 5.12090 5.14070 5.17438 5.21482 5.30359 5.32330 5.37036 5.40180 5.46960 5.52777 5.63191 5.66613 5.82886 6.35036 6.62836 6.86668 7.21144 7.33600 7.44515 8.80931 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002881 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.690964 B = 9716.952694 C =10646.400473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.641 3.359 7 O -0.594 6.594 8 N -0.585 5.585 9 C 0.113 3.887 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.086 4.086 13 H 0.090 0.910 14 C 0.498 3.502 15 O -0.599 6.599 16 N -0.707 5.707 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.082 0.918 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.983 3.017 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.255 1.255 26 C -0.120 4.120 27 C 0.134 3.866 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.406 0.594 44 H -0.016 1.016 45 H -0.009 1.009 46 H 0.269 0.731 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 25.372 3.333 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.397 3.603 7 O -0.486 6.486 8 N -0.325 5.325 9 C -0.009 4.009 10 C -0.162 4.162 11 C -0.140 4.140 12 C -0.107 4.107 13 H 0.108 0.892 14 C 0.285 3.715 15 O -0.481 6.481 16 N -0.356 5.356 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.100 0.900 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.806 3.194 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.179 1.179 26 C -0.158 4.158 27 C 0.013 3.987 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.241 0.759 44 H 0.002 0.998 45 H 0.008 0.992 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.635 25.087 3.420 28.757 hybrid contribution 0.067 -1.227 -0.873 1.507 sum -13.568 23.860 2.547 27.566 Atomic orbital electron populations 1.22449 0.93823 1.03643 1.03543 1.22350 0.94639 0.92646 0.81459 1.21864 1.02277 0.90668 1.04334 1.22483 1.01336 1.02275 0.97821 1.86323 1.71351 1.23055 1.46845 1.18350 0.78877 0.81055 0.82067 1.90887 1.42661 1.70875 1.44156 1.46802 1.52595 1.11711 1.21395 1.21786 0.88457 0.98561 0.92122 1.21189 0.97205 0.95713 1.02134 1.20300 0.99704 0.94188 0.99779 1.20732 0.95475 0.92451 1.02055 0.89188 1.21458 0.87207 0.85270 0.77533 1.90616 1.24033 1.82533 1.50882 1.46234 1.20978 1.16903 1.51520 1.18535 0.89890 0.82414 0.94727 1.21603 1.03574 1.01019 1.33224 0.90047 1.26050 0.95654 1.00619 0.97157 1.70132 1.15750 1.25070 1.45918 0.85178 0.79100 0.76926 0.78165 1.19745 1.20740 1.17899 1.21832 0.91816 1.00161 1.01981 1.21866 0.96131 0.77079 1.03575 0.91612 0.89460 0.92012 0.91510 0.88309 0.90771 0.92142 0.89327 0.92556 0.87864 0.88562 0.88208 0.93211 0.90642 0.93338 0.75900 0.99780 0.99150 0.92204 0.89799 0.88707 0.88549 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 2 C 0.13 2.17 1.13 -10.79 -0.01 2.16 16 3 C -0.13 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 5 O -0.36 -7.48 8.56 -55.54 -0.48 -7.96 16 6 C 0.64 15.24 7.64 129.79 0.99 16.23 16 7 O -0.59 -17.17 11.16 19.82 0.22 -16.95 16 8 N -0.59 -11.40 2.24 -948.50 -2.12 -13.52 16 9 C 0.11 1.66 5.39 87.38 0.47 2.14 16 10 C -0.12 -2.22 5.73 29.39 0.17 -2.05 16 11 C -0.10 -2.50 4.33 28.61 0.12 -2.38 16 12 C -0.09 -2.40 2.14 -12.37 -0.03 -2.43 16 13 H 0.09 2.59 7.48 -2.39 -0.02 2.57 16 14 C 0.50 20.32 7.06 87.66 0.62 20.94 16 15 O -0.60 -29.94 15.44 -3.04 -0.05 -29.98 16 16 N -0.71 -30.79 5.17 -466.79 -2.41 -33.20 16 17 C 0.27 14.95 5.43 85.63 0.46 15.41 16 18 C -0.56 -30.81 9.28 25.60 0.24 -30.58 16 19 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 20 C 0.00 0.28 5.46 84.66 0.46 0.74 16 21 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 22 Si 0.98 42.94 29.54 68.60 2.03 44.96 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.12 -2.54 5.18 30.23 0.16 -2.39 16 27 C 0.13 2.52 6.10 86.49 0.53 3.05 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.12 8.07 -2.39 -0.02 1.10 16 38 H 0.10 1.23 7.25 -2.39 -0.02 1.21 16 39 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.67 7.36 -2.38 -0.02 1.66 16 42 H 0.05 1.51 7.01 -2.39 -0.02 1.49 16 43 H 0.41 15.05 7.82 -92.71 -0.72 14.33 16 44 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.08 1.94 7.01 -2.39 -0.02 1.92 16 48 H 0.09 1.70 7.32 -2.39 -0.02 1.69 16 49 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.08 1.84 6.95 -2.39 -0.02 1.82 16 Total: -1.00 -75.99 388.82 3.70 -72.29 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.20 Total: 25.97 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.03 Total: 14.76 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -4.25 Total: -103.10 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.30 Total: -54.89 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -75.99 3.70 -72.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843869138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.993 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds