Wall clock time and date at job start Tue Mar 31 2020 14:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47168 * 239.99242 * 2 1 3 5 5 O 1.45207 * 109.46725 * 119.99766 * 2 1 3 6 6 C 1.34635 * 117.00097 * 59.99861 * 5 2 1 7 7 O 1.21515 * 119.99798 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00057 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99949 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.67474 * 34.29646 * 9 8 6 11 11 C 1.54885 * 110.91190 * 270.94975 * 9 8 6 12 12 C 1.54269 * 104.19677 * 203.66950 * 11 9 8 13 13 C 1.53871 * 106.59813 * 23.61322 * 12 11 9 14 14 C 1.54271 * 106.59748 * 359.97438 * 13 12 11 15 15 H 1.09003 * 110.48661 * 95.06928 * 14 13 12 16 16 C 1.53000 * 110.48546 * 217.71326 * 14 13 12 17 17 C 1.50698 * 109.47269 * 289.77342 * 16 14 13 18 18 O 1.21281 * 119.99815 * 0.02562 * 17 16 14 19 19 N 1.34773 * 119.99885 * 179.97438 * 17 16 14 20 20 C 1.46503 * 119.99585 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.47128 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99371 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00124 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00436 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47054 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46963 * 119.99874 * 25 23 21 28 28 H 1.48496 * 109.47309 * 239.99711 * 25 23 21 29 29 H 1.09000 * 109.46811 * 300.00844 * 1 2 3 30 30 H 1.09005 * 109.46871 * 59.99664 * 1 2 3 31 31 H 1.08988 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46734 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46555 * 299.99760 * 3 2 1 34 34 H 1.08990 * 109.47074 * 59.99905 * 3 2 1 35 35 H 1.09001 * 109.47288 * 300.00814 * 4 2 1 36 36 H 1.09005 * 109.46332 * 60.00763 * 4 2 1 37 37 H 1.08997 * 109.46981 * 180.02562 * 4 2 1 38 38 H 0.96993 * 119.99922 * 359.97438 * 8 6 5 39 39 H 1.09002 * 110.48771 * 322.34786 * 11 9 8 40 40 H 1.08996 * 110.48854 * 84.99197 * 11 9 8 41 41 H 1.09000 * 110.03463 * 264.32671 * 12 11 9 42 42 H 1.09002 * 110.02898 * 142.89396 * 12 11 9 43 43 H 1.09001 * 110.03295 * 240.71481 * 13 12 11 44 44 H 1.08995 * 110.07454 * 119.30480 * 13 12 11 45 45 H 1.09006 * 109.47113 * 49.77703 * 16 14 13 46 46 H 1.08995 * 109.47185 * 169.77523 * 16 14 13 47 47 H 0.97000 * 120.00781 * 0.02562 * 19 17 16 48 48 H 1.08997 * 109.47391 * 300.00302 * 20 19 17 49 49 H 1.08998 * 109.47261 * 60.01199 * 20 19 17 50 50 H 0.97000 * 120.00333 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9507 -2.5094 0.5041 8 7 2.0670 -2.6653 2.4174 9 6 1.6737 -4.0667 2.5834 10 1 1.6098 -4.5657 1.6164 11 6 0.3312 -4.1774 3.3479 12 6 0.3616 -5.5918 3.9631 13 6 1.8434 -5.9921 4.0717 14 6 2.6617 -4.8072 3.5182 15 1 2.9819 -4.1529 4.3290 16 6 3.8700 -5.3137 2.7280 17 6 4.8720 -5.9201 3.6763 18 8 4.6422 -5.9452 4.8669 19 7 6.0232 -6.4355 3.2012 20 6 6.9970 -7.0255 4.1230 21 6 8.1873 -7.5243 3.3447 22 1 8.2152 -7.4132 2.2708 23 6 9.2399 -8.1232 4.0036 24 7 9.2057 -8.2589 5.3112 25 14 10.7150 -8.7421 3.0387 26 1 10.5100 -8.4710 1.5931 27 1 11.9397 -8.0429 3.5041 28 1 10.8682 -10.2037 3.2520 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7218 -1.2489 38 1 2.6265 -2.2365 3.0835 39 1 0.2750 -3.4217 4.1315 40 1 -0.5086 -4.0785 2.6603 41 1 -0.1678 -6.2917 3.3165 42 1 -0.0950 -5.5784 4.9527 43 1 2.0331 -6.8862 3.4779 44 1 2.1064 -6.1735 5.1138 45 1 3.5452 -6.0681 2.0113 46 1 4.3308 -4.4816 2.1959 47 1 6.2069 -6.4158 2.2489 48 1 7.3221 -6.2714 4.8397 49 1 6.5359 -7.8576 4.6550 50 1 9.9465 -8.6799 5.7747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846031760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:58 Heat of formation + Delta-G solvation = -149.759907 kcal Electronic energy + Delta-G solvation = -28326.789042 eV Core-core repulsion = 24352.870326 eV Total energy + Delta-G solvation = -3973.918717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98919 -39.54419 -38.21711 -36.85706 -34.56298 -34.18129 -33.50118 -32.36828 -31.46788 -27.83324 -27.69160 -27.63888 -27.56555 -25.46144 -22.89810 -22.34024 -20.70063 -20.57333 -19.98178 -19.40503 -18.17283 -17.29170 -16.81672 -16.26559 -16.08522 -15.60837 -15.34040 -14.83858 -14.82027 -14.68472 -14.60746 -14.12964 -13.89436 -13.49862 -13.28840 -12.91717 -12.77407 -12.61992 -12.40062 -12.24078 -12.17632 -12.16179 -11.95478 -11.84338 -11.57519 -11.54808 -11.39316 -11.17686 -10.96284 -10.91719 -10.78312 -10.69019 -10.58633 -10.40340 -10.30880 -10.20194 -9.38871 -9.30870 -8.98005 -8.74832 -7.88076 -6.17988 -4.24749 2.00716 2.69713 3.22443 3.29713 3.32748 3.38705 3.93616 4.01535 4.33127 4.43740 4.45351 4.49390 4.62377 4.65765 4.76063 5.16433 5.17819 5.18285 5.24974 5.25800 5.29423 5.32412 5.40053 5.40929 5.45726 5.50275 5.54550 5.58273 5.69951 5.74212 5.78843 5.81590 5.92333 5.97706 6.01764 6.08256 6.11223 6.23391 6.34898 6.44769 6.45783 7.28843 7.30081 7.44078 7.50867 7.65979 7.96225 8.24600 8.63115 8.77413 9.10709 9.42229 10.92236 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002439 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.436328 B =11476.146609 C =12992.410494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.570 6.570 8 N -0.702 5.702 9 C 0.158 3.842 10 H 0.101 0.899 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.077 4.077 15 H 0.091 0.909 16 C -0.137 4.137 17 C 0.497 3.503 18 O -0.555 6.555 19 N -0.715 5.715 20 C 0.249 3.751 21 C -0.542 4.542 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.886 5.886 25 Si 0.903 3.097 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.390 0.610 48 H 0.026 0.974 49 H 0.026 0.974 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.702 15.834 -10.184 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.359 5.359 9 C 0.055 3.945 10 H 0.119 0.881 11 C -0.173 4.173 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.096 4.096 15 H 0.109 0.891 16 C -0.178 4.178 17 C 0.282 3.718 18 O -0.434 6.434 19 N -0.363 5.363 20 C 0.129 3.871 21 C -0.581 4.581 22 H 0.081 0.919 23 C -0.141 4.141 24 N -0.523 5.523 25 Si 0.730 3.270 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.222 0.778 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.077 15.530 -9.634 26.418 hybrid contribution 1.281 -0.139 -0.668 1.451 sum -17.797 15.391 -10.302 25.685 Atomic orbital electron populations 1.22511 0.94064 1.05068 1.02360 1.22053 0.94289 0.91510 0.82177 1.21865 1.02384 0.92567 1.03034 1.22521 1.01700 1.03528 0.96367 1.86313 1.71612 1.23773 1.46398 1.18111 0.78804 0.80455 0.82240 1.90889 1.41202 1.70360 1.43457 1.44813 1.55194 1.12495 1.23444 1.22129 0.94067 0.78293 1.00022 0.88138 1.22734 0.97263 0.97749 0.99545 1.22101 0.97236 0.95842 1.00888 1.22094 0.92953 0.96969 1.02945 1.21948 0.93232 0.97504 0.96950 0.89121 1.21781 0.95640 1.01695 0.98645 1.20429 0.82862 0.79214 0.89262 1.90645 1.77558 1.58584 1.16651 1.46494 1.19116 1.59007 1.11643 1.19090 0.85660 0.93442 0.88951 1.21274 1.02676 1.40218 0.93911 0.91892 1.24955 0.98587 0.95560 0.94959 1.69982 1.32173 1.42868 1.07288 0.86371 0.82094 0.78554 0.79953 1.19634 1.20795 1.20783 0.92267 0.91234 0.89326 0.91381 0.90197 0.91506 0.89301 0.91228 0.92072 0.75805 0.91224 0.91180 0.91684 0.91562 0.91592 0.90106 0.89180 0.89505 0.77757 0.95622 0.95585 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 2 C 0.14 1.24 1.13 -90.62 -0.10 1.13 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.37 -4.04 9.94 -40.31 -0.40 -4.44 16 6 C 0.65 7.72 8.06 54.06 0.44 8.15 16 7 O -0.57 -7.75 11.57 -19.28 -0.22 -7.97 16 8 N -0.70 -7.24 5.21 -56.80 -0.30 -7.54 16 9 C 0.16 1.66 2.64 -65.95 -0.17 1.49 16 10 H 0.10 1.14 7.54 -51.93 -0.39 0.75 16 11 C -0.13 -1.31 6.52 -25.07 -0.16 -1.47 16 12 C -0.12 -1.20 6.80 -25.61 -0.17 -1.37 16 13 C -0.11 -1.35 5.57 -25.61 -0.14 -1.49 16 14 C -0.08 -0.92 2.06 -88.97 -0.18 -1.10 16 15 H 0.09 1.17 7.77 -51.93 -0.40 0.76 16 16 C -0.14 -1.80 5.10 -27.88 -0.14 -1.94 16 17 C 0.50 9.36 7.64 -10.99 -0.08 9.27 16 18 O -0.55 -12.44 15.01 5.56 0.08 -12.36 16 19 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 20 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 21 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 22 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 25 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.96 5.88 -51.94 -0.31 0.65 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 3.68 8.66 -40.82 -0.35 3.32 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 44 H 0.08 1.14 7.77 -51.93 -0.40 0.73 16 45 H 0.09 1.05 7.95 -51.93 -0.41 0.63 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -32.40 400.06 -8.42 -40.82 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.77 Total: 7.36 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.22 Total: 2.63 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.10 Total: -47.87 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.54 Total: -24.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.40 -8.42 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846031760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.938 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds