Wall clock time and date at job start Tue Mar 31 2020 14:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47168 * 239.99242 * 2 1 3 5 5 O 1.45207 * 109.46725 * 119.99766 * 2 1 3 6 6 C 1.34635 * 117.00097 * 59.99861 * 5 2 1 7 7 O 1.21515 * 119.99798 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00057 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99949 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.67474 * 34.29646 * 9 8 6 11 11 C 1.54885 * 110.91190 * 270.94975 * 9 8 6 12 12 C 1.54269 * 104.19677 * 203.66950 * 11 9 8 13 13 C 1.53871 * 106.59813 * 23.61322 * 12 11 9 14 14 C 1.54271 * 106.59748 * 359.97438 * 13 12 11 15 15 H 1.09003 * 110.48661 * 95.06928 * 14 13 12 16 16 C 1.53000 * 110.48546 * 217.71326 * 14 13 12 17 17 C 1.50698 * 109.47269 * 289.77342 * 16 14 13 18 18 O 1.21281 * 119.99815 * 0.02562 * 17 16 14 19 19 N 1.34773 * 119.99885 * 179.97438 * 17 16 14 20 20 C 1.46503 * 119.99585 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.47128 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99371 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00124 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00436 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99921 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47054 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46963 * 119.99874 * 25 23 21 28 28 H 1.48496 * 109.47309 * 239.99711 * 25 23 21 29 29 H 1.09000 * 109.46811 * 300.00844 * 1 2 3 30 30 H 1.09005 * 109.46871 * 59.99664 * 1 2 3 31 31 H 1.08988 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46734 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46555 * 299.99760 * 3 2 1 34 34 H 1.08990 * 109.47074 * 59.99905 * 3 2 1 35 35 H 1.09001 * 109.47288 * 300.00814 * 4 2 1 36 36 H 1.09005 * 109.46332 * 60.00763 * 4 2 1 37 37 H 1.08997 * 109.46981 * 180.02562 * 4 2 1 38 38 H 0.96993 * 119.99922 * 359.97438 * 8 6 5 39 39 H 1.09002 * 110.48771 * 322.34786 * 11 9 8 40 40 H 1.08996 * 110.48854 * 84.99197 * 11 9 8 41 41 H 1.09000 * 110.03463 * 264.32671 * 12 11 9 42 42 H 1.09002 * 110.02898 * 142.89396 * 12 11 9 43 43 H 1.09001 * 110.03295 * 240.71481 * 13 12 11 44 44 H 1.08995 * 110.07454 * 119.30480 * 13 12 11 45 45 H 1.09006 * 109.47113 * 49.77703 * 16 14 13 46 46 H 1.08995 * 109.47185 * 169.77523 * 16 14 13 47 47 H 0.97000 * 120.00781 * 0.02562 * 19 17 16 48 48 H 1.08997 * 109.47391 * 300.00302 * 20 19 17 49 49 H 1.08998 * 109.47261 * 60.01199 * 20 19 17 50 50 H 0.97000 * 120.00333 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9507 -2.5094 0.5041 8 7 2.0670 -2.6653 2.4174 9 6 1.6737 -4.0667 2.5834 10 1 1.6098 -4.5657 1.6164 11 6 0.3312 -4.1774 3.3479 12 6 0.3616 -5.5918 3.9631 13 6 1.8434 -5.9921 4.0717 14 6 2.6617 -4.8072 3.5182 15 1 2.9819 -4.1529 4.3290 16 6 3.8700 -5.3137 2.7280 17 6 4.8720 -5.9201 3.6763 18 8 4.6422 -5.9452 4.8669 19 7 6.0232 -6.4355 3.2012 20 6 6.9970 -7.0255 4.1230 21 6 8.1873 -7.5243 3.3447 22 1 8.2152 -7.4132 2.2708 23 6 9.2399 -8.1232 4.0036 24 7 9.2057 -8.2589 5.3112 25 14 10.7150 -8.7421 3.0387 26 1 10.5100 -8.4710 1.5931 27 1 11.9397 -8.0429 3.5041 28 1 10.8682 -10.2037 3.2520 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7218 -1.2489 38 1 2.6265 -2.2365 3.0835 39 1 0.2750 -3.4217 4.1315 40 1 -0.5086 -4.0785 2.6603 41 1 -0.1678 -6.2917 3.3165 42 1 -0.0950 -5.5784 4.9527 43 1 2.0331 -6.8862 3.4779 44 1 2.1064 -6.1735 5.1138 45 1 3.5452 -6.0681 2.0113 46 1 4.3308 -4.4816 2.1959 47 1 6.2069 -6.4158 2.2489 48 1 7.3221 -6.2714 4.8397 49 1 6.5359 -7.8576 4.6550 50 1 9.9465 -8.6799 5.7747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846031760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:57 Heat of formation + Delta-G solvation = -171.983811 kcal Electronic energy + Delta-G solvation = -28327.752743 eV Core-core repulsion = 24352.870326 eV Total energy + Delta-G solvation = -3974.882417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84714 -40.82412 -39.42379 -37.75501 -36.10470 -35.37475 -34.34316 -34.30436 -32.63113 -29.45676 -28.70202 -28.31417 -28.25645 -26.79051 -24.47804 -23.51842 -21.71265 -21.48392 -21.23149 -20.54771 -19.06106 -18.87089 -17.95832 -17.32523 -17.11950 -17.06183 -16.83267 -16.26985 -16.14089 -15.66363 -15.50581 -15.32072 -14.75145 -14.65106 -14.44107 -14.30971 -14.03996 -13.71423 -13.42545 -13.30661 -13.26298 -12.94959 -12.93283 -12.86177 -12.82192 -12.75250 -12.55375 -12.32843 -12.24154 -12.21240 -12.07258 -11.72073 -11.68804 -11.45406 -11.34201 -11.29830 -11.05665 -10.81564 -10.69122 -10.11727 -9.78521 -8.29795 -6.45964 1.20791 1.42581 1.43311 1.56828 1.80177 1.83466 2.32375 2.61211 3.05167 3.15901 3.49096 3.63549 3.79545 3.81540 3.84626 3.99179 4.07367 4.27429 4.38355 4.41429 4.43782 4.59034 4.63996 4.65984 4.67614 4.76323 4.80314 4.80997 4.86591 4.89089 4.91883 5.05958 5.10059 5.13885 5.19654 5.24384 5.25808 5.29347 5.32849 5.36924 5.48474 5.50158 5.52360 5.63069 5.71529 5.86119 6.44267 6.65918 6.95016 7.23736 7.38422 7.53792 8.82490 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002439 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.436328 B =11476.146609 C =12992.410494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.648 3.352 7 O -0.589 6.589 8 N -0.696 5.696 9 C 0.169 3.831 10 H 0.099 0.901 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.073 4.073 15 H 0.080 0.920 16 C -0.123 4.123 17 C 0.495 3.505 18 O -0.594 6.594 19 N -0.713 5.713 20 C 0.267 3.733 21 C -0.555 4.555 22 H 0.082 0.918 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.983 3.017 26 H -0.254 1.254 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.407 0.593 48 H -0.013 1.013 49 H -0.013 1.013 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 16.937 -12.734 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.402 3.598 7 O -0.479 6.479 8 N -0.355 5.355 9 C 0.065 3.935 10 H 0.117 0.883 11 C -0.167 4.167 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.092 4.092 15 H 0.098 0.902 16 C -0.162 4.162 17 C 0.283 3.717 18 O -0.475 6.475 19 N -0.362 5.362 20 C 0.144 3.856 21 C -0.593 4.593 22 H 0.100 0.900 23 C -0.196 4.196 24 N -0.569 5.569 25 Si 0.806 3.194 26 H -0.177 1.177 27 H -0.204 1.204 28 H -0.204 1.204 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.242 0.758 48 H 0.005 0.995 49 H 0.005 0.995 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.426 16.661 -12.216 28.358 hybrid contribution 1.326 -0.443 0.166 1.408 sum -18.100 16.218 -12.050 27.126 Atomic orbital electron populations 1.22459 0.93785 1.03791 1.03493 1.22397 0.94694 0.92567 0.81500 1.21891 1.02325 0.90937 1.04271 1.22478 1.01525 1.02375 0.97362 1.86325 1.71681 1.23300 1.47409 1.18222 0.78652 0.80753 0.82188 1.90886 1.42058 1.70826 1.44172 1.44773 1.55057 1.12342 1.23293 1.21967 0.93803 0.78220 0.99475 0.88326 1.22685 0.96718 0.97769 0.99498 1.22049 0.95518 0.96063 1.01622 1.22062 0.94770 0.97067 1.01221 1.21875 0.93025 0.97444 0.96873 0.90167 1.21769 0.94224 1.02607 0.97628 1.21431 0.82747 0.77898 0.89618 1.90633 1.78219 1.59739 1.18959 1.46268 1.18958 1.59296 1.11726 1.18509 0.86754 0.91175 0.89198 1.21658 1.02772 1.39991 0.94844 0.90000 1.26051 1.02094 0.95566 0.95924 1.70136 1.33465 1.43884 1.09441 0.85136 0.77482 0.77708 0.79047 1.17732 1.20446 1.20440 0.92043 0.89203 0.91702 0.91488 0.87987 0.91253 0.91681 0.89182 0.92239 0.75048 0.90872 0.90975 0.90474 0.90940 0.91789 0.92752 0.86714 0.87369 0.75807 0.99538 0.99498 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 2 C 0.12 2.06 1.13 -10.79 -0.01 2.04 16 3 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -2.99 8.37 71.98 0.60 -2.38 16 5 O -0.37 -7.77 9.94 -55.44 -0.55 -8.33 16 6 C 0.65 14.68 8.06 129.79 1.05 15.73 16 7 O -0.59 -15.54 11.57 19.79 0.23 -15.31 16 8 N -0.70 -13.48 5.21 -564.02 -2.94 -16.41 16 9 C 0.17 3.30 2.64 46.27 0.12 3.42 16 10 H 0.10 2.05 7.54 -2.39 -0.02 2.03 16 11 C -0.13 -2.30 6.52 31.67 0.21 -2.10 16 12 C -0.11 -2.08 6.80 31.32 0.21 -1.87 16 13 C -0.11 -2.70 5.57 31.32 0.17 -2.52 16 14 C -0.07 -1.67 2.06 -9.73 -0.02 -1.69 16 15 H 0.08 2.05 7.77 -2.39 -0.02 2.03 16 16 C -0.12 -3.04 5.10 29.85 0.15 -2.89 16 17 C 0.50 18.78 7.64 87.66 0.67 19.45 16 18 O -0.59 -27.65 15.01 -3.03 -0.05 -27.70 16 19 N -0.71 -29.59 5.55 -466.78 -2.59 -32.18 16 20 C 0.27 14.56 5.43 85.63 0.46 15.02 16 21 C -0.55 -30.16 9.28 25.60 0.24 -29.92 16 22 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 23 C 0.00 0.18 5.46 84.65 0.46 0.64 16 24 N -0.93 -56.10 13.29 21.44 0.28 -55.81 16 25 Si 0.98 42.35 29.54 68.60 2.03 44.37 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.41 6.98 8.66 -92.71 -0.80 6.18 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.53 7.71 -2.39 -0.02 1.51 16 44 H 0.05 1.58 7.77 -2.39 -0.02 1.57 16 45 H 0.11 2.37 7.95 -2.38 -0.02 2.35 16 46 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.41 14.05 8.32 -92.71 -0.77 13.28 16 48 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 50 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -72.82 400.06 1.34 -71.48 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.64 Total: 30.02 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.56 Total: 9.87 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.24 Total: -104.40 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.37 Total: -51.34 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -72.82 1.34 -71.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846031760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.505 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds