Wall clock time and date at job start Tue Mar 31 2020 15:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.08995 * 109.47062 * 308.63512 * 3 2 1 5 5 C 1.52996 * 109.47025 * 188.63216 * 3 2 1 6 6 C 1.52994 * 109.46938 * 68.63409 * 3 2 1 7 7 H 1.08998 * 109.47331 * 306.67029 * 6 3 2 8 8 N 1.46501 * 109.47192 * 186.66665 * 6 3 2 9 9 C 1.34782 * 119.99604 * 86.45281 * 8 6 3 10 10 O 1.21508 * 119.99928 * 5.01534 * 9 8 6 11 11 O 1.34644 * 119.99689 * 185.01911 * 9 8 6 12 12 C 1.45199 * 116.99778 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47323 * 66.67073 * 6 3 2 14 14 O 1.21278 * 120.00282 * 79.32399 * 13 6 3 15 15 N 1.34779 * 119.99832 * 259.32635 * 13 6 3 16 16 C 1.46929 * 120.63287 * 354.40246 * 15 13 6 17 17 C 1.53190 * 108.89636 * 126.45828 * 16 15 13 18 18 C 1.53035 * 109.30993 * 54.56566 * 17 16 15 19 19 C 1.53049 * 109.53764 * 298.63146 * 18 17 16 20 20 H 1.08997 * 109.49643 * 301.38411 * 19 18 17 21 21 C 1.50699 * 109.49482 * 181.31679 * 19 18 17 22 22 H 1.08003 * 120.00165 * 239.99884 * 21 19 18 23 23 C 1.37884 * 120.00269 * 60.00572 * 21 19 18 24 24 N 1.31516 * 119.99530 * 359.97438 * 23 21 19 25 25 Si 1.86793 * 120.00216 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47201 * 89.99815 * 25 23 21 27 27 H 1.48501 * 109.47008 * 210.00038 * 25 23 21 28 28 H 1.48501 * 109.47142 * 329.99885 * 25 23 21 29 29 C 1.46960 * 120.65386 * 174.21350 * 15 13 6 30 30 H 1.09000 * 109.46829 * 188.51473 * 1 2 3 31 31 H 1.08997 * 109.47152 * 308.51595 * 1 2 3 32 32 H 1.08995 * 109.47243 * 68.51752 * 1 2 3 33 33 H 1.09003 * 109.46941 * 240.00333 * 2 1 3 34 34 H 1.08998 * 109.47609 * 120.00229 * 2 1 3 35 35 H 1.08997 * 109.47342 * 307.24493 * 5 3 2 36 36 H 1.09003 * 109.47240 * 67.24256 * 5 3 2 37 37 H 1.08999 * 109.47002 * 187.23992 * 5 3 2 38 38 H 0.96994 * 120.00321 * 266.44867 * 8 6 3 39 39 H 1.09000 * 109.46839 * 300.00027 * 12 11 9 40 40 H 1.09005 * 109.47013 * 59.99855 * 12 11 9 41 41 H 1.08999 * 109.46686 * 179.97438 * 12 11 9 42 42 H 1.09003 * 109.58433 * 6.60189 * 16 15 13 43 43 H 1.09004 * 109.58250 * 246.32342 * 16 15 13 44 44 H 1.08997 * 109.49833 * 174.51578 * 17 16 15 45 45 H 1.09003 * 109.49623 * 294.61528 * 17 16 15 46 46 H 1.08996 * 109.46537 * 58.65714 * 18 17 16 47 47 H 1.09003 * 109.45959 * 178.62822 * 18 17 16 48 48 H 0.96993 * 119.99662 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.46537 * 113.75436 * 29 15 13 50 50 H 1.08999 * 109.59655 * 353.40086 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5561 1.9989 -0.8027 5 6 3.5545 1.4480 -0.2165 6 6 1.7144 2.0985 1.3433 7 1 0.6503 1.9894 1.5526 8 7 2.0579 3.5216 1.2879 9 6 1.1642 4.4125 0.8145 10 8 0.0427 4.0498 0.5194 11 8 1.5142 5.7045 0.6687 12 6 0.5010 6.6077 0.1530 13 6 2.5119 1.4315 2.4344 14 8 3.6782 1.7214 2.5968 15 7 1.9288 0.5128 3.2297 16 6 0.4888 0.2394 3.1269 17 6 0.2828 -1.2648 2.9225 18 6 0.9889 -2.0293 4.0445 19 6 2.4904 -1.7366 3.9971 20 1 2.8877 -2.0298 3.0253 21 6 3.1891 -2.5151 5.0819 22 1 3.7449 -1.9945 5.8478 23 6 3.1189 -3.8921 5.0967 24 7 2.4419 -4.5260 4.1644 25 14 3.9855 -4.8570 6.4410 26 1 3.0623 -5.0454 7.5888 27 1 4.3956 -6.1829 5.9127 28 1 5.1877 -4.1098 6.8902 29 6 2.7214 -0.2378 4.2136 30 1 -0.3633 -1.0164 0.1522 31 1 -0.3633 0.6399 0.8041 32 1 -0.3633 0.3763 -0.9562 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.0278 0.7872 0.5097 36 1 3.7787 1.0997 -1.2247 37 1 3.9361 2.4610 -0.0889 38 1 2.9284 3.8226 1.5918 39 1 0.1880 6.2755 -0.8368 40 1 -0.3583 6.6109 0.8238 41 1 0.9125 7.6147 0.0855 42 1 0.0732 0.7836 2.2788 43 1 -0.0094 0.5554 4.0434 44 1 -0.7831 -1.4920 2.9423 45 1 0.7008 -1.5619 1.9607 46 1 0.5877 -1.7137 5.0075 47 1 0.8235 -3.0989 3.9151 48 1 2.3922 -5.4946 4.1750 49 1 2.4074 0.0387 5.2201 50 1 3.7789 -0.0084 4.0827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:32 Heat of formation + Delta-G solvation = -121.975496 kcal Electronic energy + Delta-G solvation = -30560.102135 eV Core-core repulsion = 26587.388241 eV Total energy + Delta-G solvation = -3972.713894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05289 -39.98310 -37.46835 -36.72519 -36.05046 -34.05118 -33.51553 -31.48373 -30.53671 -29.96807 -28.26841 -26.88820 -25.14425 -24.40417 -23.52209 -21.84581 -21.56603 -21.10481 -19.29666 -19.23515 -18.21124 -17.19410 -16.82021 -16.62406 -16.19014 -16.04036 -15.40918 -14.70147 -14.51976 -14.19999 -14.10083 -13.85111 -13.80339 -13.40370 -13.26684 -13.06455 -12.77819 -12.68022 -12.38240 -12.24106 -12.11292 -12.07160 -11.64173 -11.45902 -11.07190 -10.99471 -10.90293 -10.87679 -10.86576 -10.80326 -10.71524 -10.51332 -10.20493 -9.98796 -9.84921 -9.56292 -9.40406 -9.16434 -8.85671 -8.42527 -7.99432 -6.05783 -4.12880 1.91633 2.64133 2.86584 3.27244 3.34298 3.36425 3.42250 4.12348 4.39331 4.54017 4.74106 4.78879 4.92277 4.97590 5.00004 5.15986 5.24206 5.26320 5.41974 5.44114 5.57027 5.62560 5.69994 5.75252 5.86607 5.91714 5.99223 6.04864 6.12743 6.17397 6.22185 6.28001 6.30456 6.34516 6.40820 6.44550 6.50411 6.63252 6.77330 6.86183 7.11889 7.25557 7.28457 7.64940 7.81024 7.90689 8.03091 8.17174 8.30896 8.44469 8.90357 9.52281 10.99589 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.003348 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.687503 B = 8362.088857 C = 8642.663324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.093 4.093 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.139 3.861 7 H 0.116 0.884 8 N -0.691 5.691 9 C 0.650 3.350 10 O -0.572 6.572 11 O -0.372 6.372 12 C 0.057 3.943 13 C 0.511 3.489 14 O -0.541 6.541 15 N -0.591 5.591 16 C 0.092 3.908 17 C -0.138 4.138 18 C -0.113 4.113 19 C 0.042 3.958 20 H 0.030 0.970 21 C -0.515 4.515 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.888 5.888 25 Si 0.892 3.108 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.117 3.883 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.035 0.965 47 H 0.097 0.903 48 H 0.261 0.739 49 H 0.057 0.943 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 15.420 -9.086 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.168 4.168 3 C -0.113 4.113 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.033 3.967 7 H 0.134 0.866 8 N -0.351 5.351 9 C 0.403 3.597 10 O -0.461 6.461 11 O -0.285 6.285 12 C -0.038 4.038 13 C 0.297 3.703 14 O -0.419 6.419 15 N -0.323 5.323 16 C -0.031 4.031 17 C -0.176 4.176 18 C -0.151 4.151 19 C 0.023 3.977 20 H 0.048 0.952 21 C -0.554 4.554 22 H 0.075 0.925 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.720 3.280 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.251 0.749 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.512 15.275 -9.206 18.667 hybrid contribution 0.552 -0.423 0.807 1.065 sum -4.960 14.852 -8.399 17.768 Atomic orbital electron populations 1.22038 0.95546 1.02243 1.01711 1.21754 0.96316 0.94970 1.03800 1.21478 0.97821 0.96933 0.95040 0.89995 1.21876 0.94236 1.02622 1.01798 1.21216 1.01612 0.78445 0.95477 0.86631 1.44382 1.18699 1.05239 1.66787 1.18035 0.83653 0.80741 0.77318 1.90994 1.19940 1.79616 1.55510 1.86256 1.44557 1.18190 1.79528 1.23194 0.90470 0.90868 0.99235 1.20153 0.87605 0.80491 0.82026 1.90670 1.16669 1.63481 1.71123 1.48298 1.09524 1.37829 1.36638 1.22190 0.80697 0.98501 1.01705 1.22122 1.00229 0.93285 1.01923 1.21647 0.96792 1.02481 0.94208 1.18965 0.92974 0.87866 0.97900 0.95186 1.21058 1.31854 0.91258 1.11181 0.92501 1.24923 0.95241 0.97724 0.95842 1.69862 1.41138 1.08327 1.33293 0.86588 0.80029 0.79383 0.81974 1.20704 1.21246 1.19871 1.22087 0.95308 0.93820 0.89178 0.91893 0.92193 0.92886 0.91118 0.90213 0.91306 0.92733 0.92504 0.74853 0.91816 0.91814 0.88021 0.90058 0.91682 0.92344 0.91490 0.94601 0.88519 0.92950 0.92478 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.14 37.16 0.30 -1.59 16 2 C -0.13 -1.73 4.81 -26.73 -0.13 -1.85 16 3 C -0.09 -1.22 2.31 -90.62 -0.21 -1.43 16 4 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 5 C -0.15 -1.99 8.20 37.16 0.30 -1.69 16 6 C 0.14 1.98 1.77 -69.08 -0.12 1.85 16 7 H 0.12 1.65 3.73 -51.93 -0.19 1.46 16 8 N -0.69 -9.21 4.47 -59.86 -0.27 -9.48 16 9 C 0.65 8.81 8.73 54.06 0.47 9.28 16 10 O -0.57 -8.89 15.74 -19.28 -0.30 -9.20 16 11 O -0.37 -4.27 10.62 -40.34 -0.43 -4.70 16 12 C 0.06 0.45 10.56 101.05 1.07 1.52 16 13 C 0.51 8.64 5.21 -10.98 -0.06 8.58 16 14 O -0.54 -10.37 14.15 5.56 0.08 -10.29 16 15 N -0.59 -10.33 2.55 -172.73 -0.44 -10.77 16 16 C 0.09 1.39 5.33 -3.71 -0.02 1.37 16 17 C -0.14 -2.31 5.40 -26.62 -0.14 -2.45 16 18 C -0.11 -2.42 4.96 -26.69 -0.13 -2.55 16 19 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 22 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 24 N -0.89 -24.18 11.31 55.43 0.63 -23.55 16 25 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.12 2.39 5.64 -3.69 -0.02 2.37 16 30 H 0.06 0.74 7.57 -51.93 -0.39 0.34 16 31 H 0.06 0.73 4.22 -51.93 -0.22 0.51 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.08 1.25 4.77 -51.93 -0.25 1.01 16 35 H 0.07 1.10 6.68 -51.93 -0.35 0.75 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 38 H 0.41 5.32 8.16 -40.82 -0.33 4.99 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.09 2.44 -51.93 -0.13 0.97 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.15 5.11 -51.93 -0.27 0.88 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 2.36 6.04 -51.93 -0.31 2.05 16 48 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.08 1.75 7.05 -51.93 -0.37 1.39 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -29.36 373.96 -7.22 -36.57 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.81 Total: 8.07 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 0.72 Total: 2.03 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.08 Total: -43.80 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.65 Total: -24.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.36 -7.22 -36.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.403 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds