Wall clock time and date at job start Tue Mar 31 2020 15:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.08995 * 109.47062 * 308.63512 * 3 2 1 5 5 C 1.52996 * 109.47025 * 188.63216 * 3 2 1 6 6 C 1.52994 * 109.46938 * 68.63409 * 3 2 1 7 7 H 1.08998 * 109.47331 * 306.67029 * 6 3 2 8 8 N 1.46501 * 109.47192 * 186.66665 * 6 3 2 9 9 C 1.34782 * 119.99604 * 86.45281 * 8 6 3 10 10 O 1.21508 * 119.99928 * 5.01534 * 9 8 6 11 11 O 1.34644 * 119.99689 * 185.01911 * 9 8 6 12 12 C 1.45199 * 116.99778 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47323 * 66.67073 * 6 3 2 14 14 O 1.21278 * 120.00282 * 79.32399 * 13 6 3 15 15 N 1.34779 * 119.99832 * 259.32635 * 13 6 3 16 16 C 1.46929 * 120.63287 * 354.40246 * 15 13 6 17 17 C 1.53190 * 108.89636 * 126.45828 * 16 15 13 18 18 C 1.53035 * 109.30993 * 54.56566 * 17 16 15 19 19 C 1.53049 * 109.53764 * 298.63146 * 18 17 16 20 20 H 1.08997 * 109.49643 * 301.38411 * 19 18 17 21 21 C 1.50699 * 109.49482 * 181.31679 * 19 18 17 22 22 H 1.08003 * 120.00165 * 239.99884 * 21 19 18 23 23 C 1.37884 * 120.00269 * 60.00572 * 21 19 18 24 24 N 1.31516 * 119.99530 * 359.97438 * 23 21 19 25 25 Si 1.86793 * 120.00216 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47201 * 89.99815 * 25 23 21 27 27 H 1.48501 * 109.47008 * 210.00038 * 25 23 21 28 28 H 1.48501 * 109.47142 * 329.99885 * 25 23 21 29 29 C 1.46960 * 120.65386 * 174.21350 * 15 13 6 30 30 H 1.09000 * 109.46829 * 188.51473 * 1 2 3 31 31 H 1.08997 * 109.47152 * 308.51595 * 1 2 3 32 32 H 1.08995 * 109.47243 * 68.51752 * 1 2 3 33 33 H 1.09003 * 109.46941 * 240.00333 * 2 1 3 34 34 H 1.08998 * 109.47609 * 120.00229 * 2 1 3 35 35 H 1.08997 * 109.47342 * 307.24493 * 5 3 2 36 36 H 1.09003 * 109.47240 * 67.24256 * 5 3 2 37 37 H 1.08999 * 109.47002 * 187.23992 * 5 3 2 38 38 H 0.96994 * 120.00321 * 266.44867 * 8 6 3 39 39 H 1.09000 * 109.46839 * 300.00027 * 12 11 9 40 40 H 1.09005 * 109.47013 * 59.99855 * 12 11 9 41 41 H 1.08999 * 109.46686 * 179.97438 * 12 11 9 42 42 H 1.09003 * 109.58433 * 6.60189 * 16 15 13 43 43 H 1.09004 * 109.58250 * 246.32342 * 16 15 13 44 44 H 1.08997 * 109.49833 * 174.51578 * 17 16 15 45 45 H 1.09003 * 109.49623 * 294.61528 * 17 16 15 46 46 H 1.08996 * 109.46537 * 58.65714 * 18 17 16 47 47 H 1.09003 * 109.45959 * 178.62822 * 18 17 16 48 48 H 0.96993 * 119.99662 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.46537 * 113.75436 * 29 15 13 50 50 H 1.08999 * 109.59655 * 353.40086 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5561 1.9989 -0.8027 5 6 3.5545 1.4480 -0.2165 6 6 1.7144 2.0985 1.3433 7 1 0.6503 1.9894 1.5526 8 7 2.0579 3.5216 1.2879 9 6 1.1642 4.4125 0.8145 10 8 0.0427 4.0498 0.5194 11 8 1.5142 5.7045 0.6687 12 6 0.5010 6.6077 0.1530 13 6 2.5119 1.4315 2.4344 14 8 3.6782 1.7214 2.5968 15 7 1.9288 0.5128 3.2297 16 6 0.4888 0.2394 3.1269 17 6 0.2828 -1.2648 2.9225 18 6 0.9889 -2.0293 4.0445 19 6 2.4904 -1.7366 3.9971 20 1 2.8877 -2.0298 3.0253 21 6 3.1891 -2.5151 5.0819 22 1 3.7449 -1.9945 5.8478 23 6 3.1189 -3.8921 5.0967 24 7 2.4419 -4.5260 4.1644 25 14 3.9855 -4.8570 6.4410 26 1 3.0623 -5.0454 7.5888 27 1 4.3956 -6.1829 5.9127 28 1 5.1877 -4.1098 6.8902 29 6 2.7214 -0.2378 4.2136 30 1 -0.3633 -1.0164 0.1522 31 1 -0.3633 0.6399 0.8041 32 1 -0.3633 0.3763 -0.9562 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.0278 0.7872 0.5097 36 1 3.7787 1.0997 -1.2247 37 1 3.9361 2.4610 -0.0889 38 1 2.9284 3.8226 1.5918 39 1 0.1880 6.2755 -0.8368 40 1 -0.3583 6.6109 0.8238 41 1 0.9125 7.6147 0.0855 42 1 0.0732 0.7836 2.2788 43 1 -0.0094 0.5554 4.0434 44 1 -0.7831 -1.4920 2.9423 45 1 0.7008 -1.5619 1.9607 46 1 0.5877 -1.7137 5.0075 47 1 0.8235 -3.0989 3.9151 48 1 2.3922 -5.4946 4.1750 49 1 2.4074 0.0387 5.2201 50 1 3.7789 -0.0084 4.0827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:31 Heat of formation + Delta-G solvation = -139.937301 kcal Electronic energy + Delta-G solvation = -30560.881017 eV Core-core repulsion = 26587.388241 eV Total energy + Delta-G solvation = -3973.492776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24012 -41.13403 -38.82428 -38.00273 -37.11516 -35.43795 -35.01810 -33.10625 -32.15115 -31.08342 -29.27452 -27.91748 -26.92015 -25.87988 -24.57658 -23.39967 -22.62242 -22.45347 -20.74991 -20.28700 -19.61282 -18.44814 -18.29000 -17.80202 -17.57364 -17.13084 -16.73954 -16.54512 -15.75948 -15.51383 -15.28340 -15.00072 -14.90953 -14.77705 -14.55427 -14.35644 -14.24629 -13.98119 -13.67710 -13.65290 -13.38828 -12.95874 -12.91558 -12.82399 -12.65179 -12.59779 -12.49105 -12.12284 -12.02194 -11.86711 -11.82624 -11.78400 -11.67153 -11.60390 -11.46805 -11.19834 -10.87379 -10.67230 -10.39350 -10.31837 -9.52811 -8.08786 -6.22932 0.90959 1.41462 1.43133 1.49238 1.53079 1.63446 2.06648 2.44745 3.15087 3.18171 3.29032 3.60560 3.66957 3.90781 4.03237 4.18712 4.26061 4.36388 4.38150 4.40363 4.41813 4.53324 4.55704 4.59183 4.69129 4.73399 4.74263 4.83492 4.85941 4.90436 4.92964 4.98741 5.11975 5.13644 5.20160 5.22846 5.27478 5.31033 5.34908 5.46374 5.52408 5.57747 5.64903 5.96960 6.15558 6.21756 6.36771 6.43071 6.85568 7.03738 7.15756 7.44871 8.94578 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.003348 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.687503 B = 8362.088857 C = 8642.663324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C -0.087 4.087 4 H 0.095 0.905 5 C -0.144 4.144 6 C 0.150 3.850 7 H 0.121 0.879 8 N -0.690 5.690 9 C 0.653 3.347 10 O -0.592 6.592 11 O -0.374 6.374 12 C 0.048 3.952 13 C 0.511 3.489 14 O -0.567 6.567 15 N -0.594 5.594 16 C 0.093 3.907 17 C -0.128 4.128 18 C -0.106 4.106 19 C 0.045 3.955 20 H -0.007 1.007 21 C -0.537 4.537 22 H 0.051 0.949 23 C 0.020 3.980 24 N -0.910 5.910 25 Si 0.951 3.049 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.131 3.869 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.261 0.739 49 H 0.061 0.939 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 16.956 -9.781 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.106 4.106 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.043 3.957 7 H 0.139 0.861 8 N -0.350 5.350 9 C 0.406 3.594 10 O -0.482 6.482 11 O -0.287 6.287 12 C -0.045 4.045 13 C 0.299 3.701 14 O -0.447 6.447 15 N -0.325 5.325 16 C -0.028 4.028 17 C -0.166 4.166 18 C -0.144 4.144 19 C 0.026 3.974 20 H 0.012 0.988 21 C -0.575 4.575 22 H 0.069 0.931 23 C -0.180 4.180 24 N -0.549 5.549 25 Si 0.777 3.223 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.197 1.197 29 C 0.009 3.991 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.153 0.847 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.792 16.840 -9.907 20.686 hybrid contribution 0.985 -0.850 0.984 1.631 sum -5.808 15.990 -8.923 19.210 Atomic orbital electron populations 1.22007 0.94207 1.02446 1.02479 1.21725 0.97466 0.94670 1.02846 1.21468 0.97572 0.96955 0.94653 0.88693 1.21823 0.94325 1.02076 1.01865 1.21085 1.01021 0.78914 0.94671 0.86146 1.44322 1.18863 1.04917 1.66889 1.18052 0.83148 0.81341 0.76864 1.90977 1.20689 1.80134 1.56433 1.86276 1.45694 1.17360 1.79405 1.23556 0.90284 0.91574 0.99117 1.20633 0.87459 0.80031 0.82018 1.90656 1.17990 1.64298 1.71715 1.48273 1.10295 1.37723 1.36243 1.22339 0.79340 0.97549 1.03567 1.22008 1.01213 0.93731 0.99625 1.21435 0.95765 1.01204 0.95988 1.18836 0.94073 0.89400 0.95055 0.98837 1.21422 1.32240 0.92032 1.11824 0.93065 1.25619 0.95918 0.98632 0.97797 1.69991 1.41934 1.08420 1.34533 0.85672 0.79058 0.77935 0.79674 1.19925 1.21037 1.19746 1.21645 0.94768 0.92470 0.90241 0.91726 0.92237 0.91452 0.90314 0.93006 0.94331 0.91009 0.92235 0.74598 0.91603 0.91805 0.84687 0.87615 0.90173 0.89544 0.91957 0.94763 0.91695 0.92985 0.92098 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.14 71.98 0.59 -2.74 16 2 C -0.13 -3.26 4.81 30.59 0.15 -3.11 16 3 C -0.09 -2.15 2.31 -10.80 -0.02 -2.18 16 4 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 5 C -0.14 -3.76 8.20 71.98 0.59 -3.17 16 6 C 0.15 4.05 1.77 44.24 0.08 4.13 16 7 H 0.12 3.16 3.73 -2.39 -0.01 3.15 16 8 N -0.69 -17.34 4.47 -573.71 -2.56 -19.91 16 9 C 0.65 16.39 8.73 129.79 1.13 17.52 16 10 O -0.59 -17.06 15.74 19.82 0.31 -16.75 16 11 O -0.37 -7.78 10.62 -55.53 -0.59 -8.37 16 12 C 0.05 0.64 10.56 113.37 1.20 1.84 16 13 C 0.51 17.17 5.21 87.66 0.46 17.63 16 14 O -0.57 -22.08 14.15 -3.02 -0.04 -22.12 16 15 N -0.59 -20.69 2.55 -818.80 -2.09 -22.78 16 16 C 0.09 2.69 5.33 86.36 0.46 3.15 16 17 C -0.13 -4.16 5.40 30.67 0.17 -4.00 16 18 C -0.11 -4.59 4.96 30.62 0.15 -4.43 16 19 C 0.05 2.20 2.25 -11.46 -0.03 2.18 16 20 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 21 C -0.54 -28.95 8.56 25.60 0.22 -28.73 16 22 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 23 C 0.02 1.07 5.30 84.66 0.45 1.52 16 24 N -0.91 -50.78 11.31 21.45 0.24 -50.53 16 25 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 C 0.13 5.51 5.64 86.36 0.49 6.00 16 30 H 0.06 1.37 7.57 -2.39 -0.02 1.36 16 31 H 0.06 1.27 4.22 -2.39 -0.01 1.26 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.84 8.13 -2.39 -0.02 1.83 16 34 H 0.05 1.62 4.77 -2.39 -0.01 1.61 16 35 H 0.04 1.24 6.68 -2.39 -0.02 1.23 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.50 7.61 -2.39 -0.02 1.49 16 38 H 0.42 10.25 8.16 -92.71 -0.76 9.50 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.11 2.58 2.44 -2.39 -0.01 2.57 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.06 2.11 5.11 -2.39 -0.01 2.10 16 46 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16 48 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 49 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.06 2.72 7.05 -2.39 -0.02 2.70 16 Total: -1.00 -64.76 373.96 3.57 -61.19 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.21 Total: 28.63 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.07 Total: 5.60 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -4.41 Total: -93.21 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.32 Total: -47.23 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.76 3.57 -61.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.746 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds