Wall clock time and date at job start Tue Mar 31 2020 14:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99912 * 2 1 4 4 C 1.50696 * 109.46844 * 269.99441 * 3 2 1 5 5 H 1.08006 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00195 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99828 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99997 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47488 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47208 * 119.99817 * 8 6 4 11 11 H 1.48506 * 109.46682 * 239.99473 * 8 6 4 12 12 C 1.34779 * 119.99645 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99864 * 186.46491 * 12 2 1 14 14 C 1.50693 * 119.99985 * 6.47077 * 12 2 1 15 15 N 1.46495 * 112.85339 * 46.96054 * 14 12 2 16 16 C 1.46507 * 120.00091 * 231.27694 * 15 14 12 17 17 C 1.34774 * 120.00070 * 51.27275 * 15 14 12 18 18 O 1.21510 * 119.99945 * 354.98384 * 17 15 14 19 19 O 1.34639 * 119.99977 * 174.99254 * 17 15 14 20 20 C 1.45203 * 117.00165 * 184.11722 * 19 17 15 21 21 C 1.53002 * 109.47117 * 63.22979 * 20 19 17 22 22 C 1.52992 * 109.47512 * 183.23081 * 20 19 17 23 23 C 1.53000 * 109.46775 * 303.23250 * 20 19 17 24 24 C 1.53789 * 113.61400 * 178.15432 * 14 12 2 25 25 C 1.53960 * 87.01808 * 89.22713 * 24 14 12 26 26 C 1.53780 * 87.11234 * 25.36502 * 25 24 14 27 27 H 1.09001 * 109.47529 * 271.32472 * 1 2 3 28 28 H 1.09004 * 109.47027 * 31.32200 * 1 2 3 29 29 H 1.08997 * 109.47078 * 151.32149 * 1 2 3 30 30 H 1.08995 * 109.47214 * 29.99733 * 3 2 1 31 31 H 1.09003 * 109.46666 * 149.99993 * 3 2 1 32 32 H 0.96996 * 120.00081 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46918 * 269.99642 * 16 15 14 34 34 H 1.09000 * 109.47425 * 149.99784 * 16 15 14 35 35 H 1.08997 * 109.46764 * 29.98904 * 16 15 14 36 36 H 1.08994 * 109.47226 * 60.00522 * 21 20 19 37 37 H 1.08998 * 109.46911 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47077 * 300.00110 * 21 20 19 39 39 H 1.09005 * 109.46753 * 59.99625 * 22 20 19 40 40 H 1.09005 * 109.47514 * 179.97438 * 22 20 19 41 41 H 1.08997 * 109.47324 * 300.00232 * 22 20 19 42 42 H 1.09007 * 109.47271 * 67.59183 * 23 20 19 43 43 H 1.09001 * 109.47458 * 187.59378 * 23 20 19 44 44 H 1.08998 * 109.47353 * 307.59633 * 23 20 19 45 45 H 1.08992 * 113.61395 * 203.74665 * 24 14 12 46 46 H 1.08998 * 113.61080 * 334.65438 * 24 14 12 47 47 H 1.08997 * 113.53715 * 270.81037 * 25 24 14 48 48 H 1.09004 * 113.73967 * 139.94613 * 25 24 14 49 49 H 1.09003 * 113.61462 * 220.09289 * 26 25 24 50 50 H 1.09001 * 113.69191 * 89.19118 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0959 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5542 3.6176 -0.6733 8 14 3.4378 3.4167 -3.4341 9 1 2.8599 2.4167 -4.3674 10 1 2.8007 4.7378 -3.6669 11 1 4.9003 3.5244 -3.6679 12 6 2.1388 -1.1673 0.0005 13 8 3.3459 -1.1706 0.1188 14 6 1.3925 -2.4682 -0.1460 15 7 0.4117 -2.4420 -1.2338 16 6 -0.9719 -2.8533 -0.9827 17 6 0.7820 -2.0395 -2.4656 18 8 1.9039 -1.6122 -2.6534 19 8 -0.0911 -2.1107 -3.4879 20 6 0.4035 -1.7471 -4.8038 21 6 1.5070 -2.7214 -5.2210 22 6 -0.7427 -1.8114 -5.8152 23 6 0.9674 -0.3255 -4.7617 24 6 2.3076 -3.7039 -0.1713 25 6 2.1693 -3.7380 1.3617 26 6 0.8285 -3.0074 1.1792 27 1 -0.3634 0.0238 1.0274 28 1 -0.3633 0.8779 -0.5342 29 1 -0.3633 -0.9016 -0.4932 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5139 32 1 4.0310 4.4434 -0.8506 33 1 -1.0713 -3.9236 -1.1636 34 1 -1.6397 -2.3085 -1.6501 35 1 -1.2340 -2.6339 0.0523 36 1 1.1052 -3.7342 -5.2510 37 1 1.8785 -2.4482 -6.2086 38 1 2.3235 -2.6756 -4.5005 39 1 -1.5289 -1.1173 -5.5179 40 1 -0.3715 -1.5380 -6.8030 41 1 -1.1445 -2.8241 -5.8452 42 1 1.8664 -0.3093 -4.1454 43 1 1.2144 -0.0024 -5.7730 44 1 0.2234 0.3481 -4.3366 45 1 1.8635 -4.5659 -0.6690 46 1 3.3199 -3.4906 -0.5146 47 1 2.9227 -3.1450 1.8800 48 1 2.0667 -4.7432 1.7708 49 1 0.6484 -2.2326 1.9245 50 1 -0.0216 -3.6776 1.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858751234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:12 Heat of formation + Delta-G solvation = -89.296126 kcal Electronic energy + Delta-G solvation = -31791.776133 eV Core-core repulsion = 27820.479322 eV Total energy + Delta-G solvation = -3971.296810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.53569 -41.14156 -38.88378 -37.82693 -36.82093 -35.80336 -34.76849 -34.39877 -30.06940 -28.83591 -28.40419 -28.26918 -27.42698 -26.89504 -26.10461 -24.92488 -23.06733 -21.84355 -20.61172 -19.34345 -18.89448 -18.70094 -18.11427 -17.56869 -17.15725 -16.99148 -16.76522 -16.43422 -15.84381 -15.60251 -15.44964 -15.22953 -14.65066 -14.55428 -14.27800 -14.08982 -13.84809 -13.72673 -13.44492 -13.33841 -13.19489 -13.17396 -12.99637 -12.92944 -12.83919 -12.77240 -12.68052 -12.52243 -12.47839 -12.37415 -12.23458 -12.13003 -11.86023 -11.69830 -11.54727 -11.36659 -10.95574 -10.82142 -10.67971 -9.67558 -9.36145 -8.24927 -6.36537 0.97240 1.25583 1.29505 1.42407 1.72968 1.87959 2.29908 2.40079 2.90228 3.03719 3.35888 3.45269 3.59222 3.75501 3.78989 3.81375 3.93801 4.13738 4.32295 4.42231 4.47978 4.56078 4.58031 4.62163 4.66596 4.72701 4.73634 4.74686 4.81061 4.83809 4.88825 4.92065 4.93640 4.97901 5.01198 5.06933 5.10762 5.17718 5.26271 5.27638 5.38824 5.46988 5.51313 5.59575 5.82219 6.07124 6.28992 6.70799 6.78164 7.27032 7.37004 7.46418 8.82676 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.007132 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.193769 B = 3924.916845 C = 5919.649221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.262 3.738 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.265 1.265 11 H -0.283 1.283 12 C 0.527 3.473 13 O -0.590 6.590 14 C 0.140 3.860 15 N -0.582 5.582 16 C 0.065 3.935 17 C 0.635 3.365 18 O -0.575 6.575 19 O -0.355 6.355 20 C 0.131 3.869 21 C -0.171 4.171 22 C -0.128 4.128 23 C -0.181 4.181 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.110 4.110 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.021 0.979 31 H -0.005 1.005 32 H 0.266 0.734 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.116 0.884 46 H 0.041 0.959 47 H 0.058 0.942 48 H 0.119 0.881 49 H 0.082 0.918 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.818 -18.746 -3.506 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.330 5.330 3 C 0.141 3.859 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.189 1.189 11 H -0.209 1.209 12 C 0.314 3.686 13 O -0.470 6.470 14 C 0.052 3.948 15 N -0.325 5.325 16 C -0.075 4.075 17 C 0.390 3.610 18 O -0.463 6.463 19 O -0.270 6.270 20 C 0.095 3.905 21 C -0.228 4.228 22 C -0.185 4.185 23 C -0.239 4.239 24 C -0.168 4.168 25 C -0.165 4.165 26 C -0.147 4.147 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.039 0.961 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.135 0.865 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.137 0.863 49 H 0.100 0.900 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.815 -18.387 -3.557 24.512 hybrid contribution 1.226 1.409 -0.831 2.044 sum -14.589 -16.978 -4.388 22.811 Atomic orbital electron populations 1.22413 0.78806 1.04582 1.02633 1.47904 1.07890 1.06156 1.71005 1.18720 0.90849 0.80275 0.96076 1.21702 1.35820 1.05844 0.92949 0.93120 1.25790 0.95201 0.96565 1.01618 1.70057 1.39526 1.14898 1.32643 0.85511 0.77896 0.78427 0.79965 1.19225 1.18943 1.20886 1.20463 0.87040 0.85611 0.75441 1.90596 1.16641 1.87503 1.52222 1.22098 0.91098 0.92146 0.89408 1.46889 1.12785 1.68251 1.04582 1.22272 0.78151 1.02392 1.04650 1.18396 0.82793 0.77424 0.82375 1.91087 1.22497 1.49200 1.83533 1.86252 1.41603 1.82078 1.17076 1.22315 0.96258 0.93570 0.78405 1.22352 0.98230 0.99560 1.02680 1.21833 0.95866 1.04292 0.96504 1.22527 1.02054 0.96264 1.03034 1.23292 0.98861 0.95840 0.98773 1.22697 0.96602 1.02836 0.94345 1.23454 0.99821 1.00557 0.90914 0.90845 0.92995 0.87658 0.96136 0.98731 0.92556 0.89342 0.89864 0.87578 0.90252 0.89476 0.93953 0.91295 0.88489 0.89723 0.93056 0.90129 0.93407 0.86544 0.93999 0.92294 0.86318 0.89974 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.02 10.11 127.77 1.29 3.32 16 2 N -0.60 -28.51 2.86 -851.14 -2.43 -30.94 16 3 C 0.26 15.55 5.22 85.63 0.45 15.99 16 4 C -0.52 -33.13 9.39 25.60 0.24 -32.89 16 5 H 0.05 3.30 7.73 -2.91 -0.02 3.28 16 6 C 0.01 0.39 5.46 84.66 0.46 0.85 16 7 N -0.93 -59.87 13.29 21.45 0.28 -59.59 16 8 Si 0.96 48.86 29.54 68.60 2.03 50.89 16 9 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 12 C 0.53 24.63 4.86 87.65 0.43 25.05 16 13 O -0.59 -34.10 15.23 -3.04 -0.05 -34.15 16 14 C 0.14 4.43 0.40 3.39 0.00 4.43 16 15 N -0.58 -16.22 1.45 -930.79 -1.35 -17.56 16 16 C 0.06 0.97 7.78 127.77 0.99 1.96 16 17 C 0.64 22.71 7.13 129.79 0.93 23.64 16 18 O -0.58 -27.08 10.67 19.81 0.21 -26.86 16 19 O -0.36 -10.56 8.77 -55.48 -0.49 -11.05 16 20 C 0.13 3.64 1.13 -10.80 -0.01 3.63 16 21 C -0.17 -4.56 8.42 71.98 0.61 -3.95 16 22 C -0.13 -2.29 8.85 71.98 0.64 -1.65 16 23 C -0.18 -6.47 8.16 71.98 0.59 -5.89 16 24 C -0.13 -3.77 7.24 31.18 0.23 -3.55 16 25 C -0.13 -2.91 7.73 31.18 0.24 -2.67 16 26 C -0.11 -2.18 6.20 31.12 0.19 -1.99 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 29 H 0.11 3.02 2.57 -2.39 -0.01 3.02 16 30 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 31 H -0.01 -0.37 7.34 -2.39 -0.02 -0.39 16 32 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.24 7.46 -2.39 -0.02 1.23 16 35 H 0.11 1.01 6.09 -2.39 -0.01 1.00 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.48 6.28 -2.39 -0.01 1.47 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.05 2.39 5.71 -2.38 -0.01 2.38 16 43 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.04 1.62 7.45 -2.39 -0.02 1.60 16 47 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 48 H 0.12 1.73 8.14 -2.38 -0.02 1.72 16 49 H 0.08 1.67 8.09 -2.39 -0.02 1.66 16 50 H 0.15 1.49 6.42 -2.39 -0.02 1.48 16 Total: -1.00 -92.04 388.35 6.40 -85.64 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.92 Total: 17.34 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 7.27 Total: 26.29 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.49 Total: -108.10 kcal Atomic # 8 Polarization: -71.74 SS G_CDS: -0.32 Total: -72.07 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -92.04 6.40 -85.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858751234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.653 kcal (2) G-P(sol) polarization free energy of solvation -92.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds