Wall clock time and date at job start Tue Mar 31 2020 14:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00176 * 2 1 4 4 O 1.21511 * 120.00474 * 174.58089 * 3 2 1 5 5 O 1.34639 * 120.00011 * 354.58165 * 3 2 1 6 6 C 1.45204 * 117.00115 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46825 * 60.00071 * 6 5 3 8 8 C 1.52996 * 109.47183 * 179.97438 * 6 5 3 9 9 C 1.52994 * 109.47153 * 300.00429 * 6 5 3 10 10 C 1.46503 * 119.99786 * 180.02562 * 2 1 3 11 11 C 1.50706 * 112.84582 * 241.15628 * 10 2 1 12 12 O 1.21278 * 119.99807 * 213.52304 * 11 10 2 13 13 N 1.34780 * 119.99998 * 33.52850 * 11 10 2 14 14 C 1.46492 * 119.99792 * 175.06578 * 13 11 10 15 15 C 1.53001 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47357 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00256 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99648 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00256 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46898 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47111 * 119.99787 * 20 18 16 23 23 H 1.48497 * 109.47238 * 239.99687 * 20 18 16 24 24 C 1.53775 * 113.61574 * 109.96146 * 10 2 1 25 25 C 1.53953 * 87.01769 * 220.04666 * 24 10 2 26 26 C 1.53770 * 87.11305 * 25.36331 * 25 24 10 27 27 H 1.09000 * 109.47196 * 89.99688 * 1 2 3 28 28 H 1.09003 * 109.47055 * 330.00061 * 1 2 3 29 29 H 1.08996 * 109.47561 * 209.99808 * 1 2 3 30 30 H 1.09007 * 109.47041 * 60.00013 * 7 6 5 31 31 H 1.09002 * 109.47386 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47277 * 300.00611 * 7 6 5 33 33 H 1.09004 * 109.46652 * 60.00535 * 8 6 5 34 34 H 1.09003 * 109.47178 * 180.02562 * 8 6 5 35 35 H 1.08998 * 109.47437 * 300.00586 * 8 6 5 36 36 H 1.09002 * 109.47426 * 59.99829 * 9 6 5 37 37 H 1.09003 * 109.46947 * 179.97438 * 9 6 5 38 38 H 1.08997 * 109.47535 * 299.99622 * 9 6 5 39 39 H 0.97004 * 120.00083 * 355.06550 * 13 11 10 40 40 H 1.09001 * 109.47521 * 299.99384 * 14 13 11 41 41 H 1.09004 * 109.47347 * 60.00130 * 14 13 11 42 42 H 1.08996 * 109.47290 * 300.00273 * 15 14 13 43 43 H 1.09003 * 109.47058 * 60.00355 * 15 14 13 44 44 H 0.96999 * 119.99912 * 180.02562 * 19 18 16 45 45 H 1.09004 * 113.61744 * 334.56662 * 24 10 2 46 46 H 1.08998 * 113.61504 * 105.46976 * 24 10 2 47 47 H 1.09004 * 113.53645 * 270.80574 * 25 24 10 48 48 H 1.09001 * 113.74158 * 139.94523 * 25 24 10 49 49 H 1.09008 * 113.61573 * 220.09082 * 26 25 24 50 50 H 1.09004 * 113.69458 * 89.20012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3499 1.1696 0.0994 5 8 1.4703 2.3306 -0.1101 6 6 2.2608 3.5485 -0.1024 7 6 3.2431 3.5263 -1.2752 8 6 1.3343 4.7587 -0.2366 9 6 3.0379 3.6438 1.2121 10 6 2.1975 -1.2688 -0.0006 11 6 3.0703 -1.4411 1.2159 12 8 4.1229 -2.0369 1.1275 13 7 2.6810 -0.9331 2.4020 14 6 3.4745 -1.1925 3.6058 15 6 2.8189 -0.5071 4.8063 16 6 3.6348 -0.7745 6.0448 17 1 4.5315 -1.3731 5.9819 18 6 3.2366 -0.2549 7.2583 19 7 2.1449 0.4745 7.3348 20 14 4.2483 -0.5858 8.7933 21 1 5.4208 -1.4263 8.4416 22 1 4.7158 0.7025 9.3652 23 1 3.4122 -1.2969 9.7935 24 6 2.9220 -1.5612 -1.3250 25 6 2.4788 -3.0253 -1.1512 26 6 1.3135 -2.4903 -0.3025 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8899 0.5138 30 1 2.6894 3.4585 -2.2117 31 1 3.8363 4.4408 -1.2697 32 1 3.9031 2.6641 -1.1801 33 1 0.6342 4.7746 0.5988 34 1 1.9278 5.6730 -0.2312 35 1 0.7810 4.6906 -1.1732 36 1 3.6980 2.7816 1.3072 37 1 3.6317 4.5579 1.2176 38 1 2.3382 3.6596 2.0476 39 1 1.8754 -0.3957 2.4586 40 1 3.5248 -2.2668 3.7833 41 1 4.4818 -0.7993 3.4688 42 1 2.7689 0.5672 4.6287 43 1 1.8115 -0.9000 4.9436 44 1 1.8649 0.8403 8.1884 45 1 2.4723 -1.0682 -2.1869 46 1 4.0018 -1.4217 -1.2721 47 1 3.1881 -3.6307 -0.5869 48 1 2.1609 -3.5007 -2.0792 49 1 1.0964 -3.0998 0.5748 50 1 0.4223 -2.2516 -0.8830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860744860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:20 Heat of formation + Delta-G solvation = -98.497858 kcal Electronic energy + Delta-G solvation = -30200.213123 eV Core-core repulsion = 26228.517296 eV Total energy + Delta-G solvation = -3971.695827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32161 -40.07174 -37.70611 -36.73244 -35.16799 -34.56791 -33.59901 -32.75134 -29.74805 -27.75522 -27.45855 -27.34121 -26.36000 -25.22473 -24.54670 -22.26242 -21.58714 -20.71406 -19.66775 -18.80893 -18.03273 -17.18038 -16.50140 -16.34550 -15.98721 -15.79747 -15.17668 -14.75888 -14.62750 -14.51306 -14.35892 -14.19931 -13.59066 -13.54343 -13.09130 -12.99462 -12.89979 -12.58308 -12.30778 -12.23984 -12.15745 -11.98184 -11.92424 -11.80988 -11.53953 -11.37529 -11.26961 -11.17517 -11.07107 -11.02027 -10.63187 -10.59445 -10.36355 -10.30746 -9.93450 -9.85491 -9.55630 -9.25638 -8.67337 -8.50293 -8.30691 -6.08042 -4.10518 1.98234 2.84024 2.93206 3.29085 3.36431 3.41655 3.61092 3.77309 4.31702 4.40680 4.42715 4.66852 4.69304 4.71525 4.83616 4.86311 4.95713 5.26440 5.29090 5.34417 5.37967 5.41541 5.45668 5.52143 5.57196 5.59834 5.61357 5.73617 5.74892 5.84335 5.86592 5.93689 6.02463 6.13823 6.24728 6.30401 6.38378 6.39101 6.41651 6.49003 6.77281 6.97414 7.26550 7.53638 7.63825 7.90357 8.04728 8.29420 8.35539 8.67482 8.95551 9.54150 11.03679 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.004102 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.484934 B = 6824.059841 C = 8592.556931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.649 3.351 4 O -0.546 6.546 5 O -0.361 6.361 6 C 0.136 3.864 7 C -0.182 4.182 8 C -0.139 4.139 9 C -0.185 4.185 10 C 0.145 3.855 11 C 0.532 3.468 12 O -0.537 6.537 13 N -0.712 5.712 14 C 0.123 3.877 15 C 0.014 3.986 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.121 4.121 25 C -0.135 4.135 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 3.049 -20.555 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.335 5.335 3 C 0.404 3.596 4 O -0.433 6.433 5 O -0.277 6.277 6 C 0.100 3.900 7 C -0.239 4.239 8 C -0.196 4.196 9 C -0.243 4.243 10 C 0.057 3.943 11 C 0.315 3.685 12 O -0.414 6.414 13 N -0.360 5.360 14 C 0.001 3.999 15 C -0.023 4.023 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.159 4.159 25 C -0.173 4.173 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.127 2.802 -20.411 21.494 hybrid contribution -0.027 0.406 1.041 1.118 sum -6.154 3.208 -19.369 20.575 Atomic orbital electron populations 1.21841 0.78342 1.03940 1.02134 1.46733 1.07020 1.02474 1.77288 1.18009 0.84090 0.81052 0.76430 1.90972 1.12357 1.86379 1.53608 1.86285 1.41379 1.13868 1.86118 1.22074 0.90798 0.80474 0.96680 1.22507 0.99973 1.04575 0.96864 1.21847 0.99651 0.95049 1.03082 1.22522 1.01494 1.04547 0.95689 1.22178 0.94097 0.82146 0.95850 1.19731 0.85776 0.79251 0.83713 1.90663 1.22522 1.43211 1.84994 1.46161 1.29036 1.52511 1.08306 1.21725 0.94821 1.00133 0.83213 1.19302 0.96346 0.95895 0.90754 1.21089 1.09884 1.32565 0.92242 0.92201 1.24990 0.95153 0.94942 0.99161 1.69970 1.23339 1.34501 1.25525 0.86466 0.80291 0.78084 0.82793 1.19561 1.20937 1.20940 1.23158 1.02373 0.95986 0.94433 1.22803 0.97577 0.96573 1.00318 1.23249 0.97875 0.94004 1.01357 0.92392 0.90099 0.90415 0.92471 0.91239 0.89329 0.91342 0.90226 0.91725 0.89161 0.91261 0.91773 0.77289 0.92603 0.92491 0.96106 0.96104 0.92951 0.89538 0.89433 0.88653 0.90498 0.89910 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 9.24 59.85 0.55 1.27 16 2 N -0.59 -7.59 2.29 -172.73 -0.40 -7.99 16 3 C 0.65 9.79 7.36 54.05 0.40 10.19 16 4 O -0.55 -9.84 10.89 -19.28 -0.21 -10.05 16 5 O -0.36 -4.84 8.77 -40.32 -0.35 -5.19 16 6 C 0.14 1.64 1.13 -90.62 -0.10 1.53 16 7 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 8 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 9 C -0.19 -2.53 8.37 37.15 0.31 -2.22 16 10 C 0.14 2.00 1.00 -132.16 -0.13 1.86 16 11 C 0.53 9.85 5.77 -10.98 -0.06 9.79 16 12 O -0.54 -11.62 15.33 5.56 0.09 -11.53 16 13 N -0.71 -13.77 5.50 -60.29 -0.33 -14.10 16 14 C 0.12 2.79 5.62 -4.05 -0.02 2.77 16 15 C 0.01 0.37 5.09 -27.88 -0.14 0.23 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 17 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.12 -1.54 6.89 -25.83 -0.18 -1.71 16 25 C -0.13 -1.45 7.69 -25.83 -0.20 -1.65 16 26 C -0.13 -1.30 6.15 -25.93 -0.16 -1.46 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.74 7.47 -51.93 -0.39 0.35 16 29 H 0.08 0.59 6.93 -51.93 -0.36 0.23 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.53 5.88 -51.93 -0.31 1.23 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.39 7.11 7.90 -40.82 -0.32 6.79 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.34 7.68 -51.93 -0.40 0.94 16 47 H 0.09 1.21 7.55 -51.93 -0.39 0.81 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.87 8.09 -51.92 -0.42 0.45 16 50 H 0.10 0.75 6.92 -51.93 -0.36 0.39 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -33.67 397.37 -7.72 -41.39 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.71 Total: 6.05 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 0.49 Total: 4.48 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.01 Total: -47.78 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.48 Total: -26.78 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.67 -7.72 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860744860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.104 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds